BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0018.p (375 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4J3V1.1 A4J3V1_DESRM Baseplate J family protein 320 1e-85 A8GLQ9.1 A8GLQ9_SERP5 Baseplate J family protein 286 3e-75 B6WRR4.1 B6WRR4_9DELT Putative uncharacterized protein 273 2e-71 C0FFR4.1 C0FFR4_9CLOT Putative uncharacterized protein 272 4e-71 C2BG14.1 C2BG14_9FIRM Possible phage baseplate protein 267 1e-69 >A4J3V1.1 A4J3V1_DESRM Baseplate J family protein Length = 374 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 164/346 (47%), Positives = 225/346 (65%), Gaps = 3/346 (0%) Query: 6 LPDILFSEEDAAAIQQDVITVYEGLAGRSLQPADPVRLFLSSLAAIIVQQKVLINQTAKG 65 LPDI F+E+ A I+ D + Y+ L G+ L ADP R F+ +L II QQ+VLI+ T K Sbjct: 8 LPDISFTEKSATQIEADFLAAYKSLTGQVLGDADPRRKFIQALIPIIAQQRVLIDNTGKQ 67 Query: 66 NLLRYASGAVLDHMGAFQGSERLNASAAIVTLQFVLSIPLASATSIPTGTRVGAQGGNGS 125 NL+ YA LDH+GA + RL A+ A T +F L A +IP G+RV A G N Sbjct: 68 NLISYAVDNSLDHIGALTETSRLQATYATATERFTLLEAQVQAYTIPVGSRVTA-GDN-- 124 Query: 126 IFFSTTEYVEIPAGETAGIATAVCSDPGAIGNGFLPGQINVLMDPLPFVQSVSNLTISSG 185 +F++TTE + IPAG+ G C GA GNG+LPG IN L+DPLP+V +VSN+T S G Sbjct: 125 VFWATTEPLVIPAGQLTGDVQVQCQTIGAAGNGYLPGHINQLVDPLPYVVTVSNITESEG 184 Query: 186 GAAAETDEAFKERIRNAPESYSTAGPQGAYEFWAKSASSAIIDVHAYSPAEGRVTVVPLL 245 G E ++ + ERI A ES+STAGP+GAYE+WAK+AS IIDV++YSP+ G V + PL+ Sbjct: 185 GIDIEANDPYAERIHEALESFSTAGPEGAYEYWAKTASQTIIDVYSYSPSPGVVEIRPLI 244 Query: 246 ADGEVPSQDVLDSISETLEDRGIRPLTDLVTVSAPQPVSYNTIVTYYISRSRASEVSSIQ 305 A GE+P Q+++D+++ ++ IRPLTD V V AP+ +SY+ +TY+I+ A+ IQ Sbjct: 245 AGGEMPGQEIIDAVNAICSNKNIRPLTDFVQVVAPEQISYDISLTYWINSENAAAAEGIQ 304 Query: 306 EKISAAVTAYQRWQKVKLGRHVNPSELISRIMAAGAQRVVPTAPVY 351 + V Y+ WQK KLGR ++PSEL +RI AGA+RV P Y Sbjct: 305 ASVDKVVDEYKLWQKSKLGRDIDPSELNARIKNAGAKRVALVLPAY 350 >A8GLQ9.1 A8GLQ9_SERP5 Baseplate J family protein Length = 372 Score = 286 bits (731), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 150/348 (43%), Positives = 210/348 (60%), Gaps = 4/348 (1%) Query: 6 LPDILFSEEDAAAIQQDVITVYEGLAGRSLQPADPVRLFLSSLAAIIVQQKVLINQTAKG 65 LP+I F+E+ + ITV+E L+G +L PADP R+F+ SL II QQ+V+I+ +AK Sbjct: 7 LPEINFAEKSPEITVNEAITVFEKLSGETLAPADPRRVFIESLCYIIAQQRVIIDHSAKM 66 Query: 66 NLLRYASGAVLDHMGAFQGSERLNASAAIVTLQFVLSIPLASATSIPTGTRVGAQGGNGS 125 NLL Y+ G LD +G F RL A +++ T QF L SA IP VGAQ GS Sbjct: 67 NLLSYSEGKYLDVLGYFLDVTRLPAQSSVTTQQFELETAQISAYVIP----VGAQVTTGS 122 Query: 126 IFFSTTEYVEIPAGETAGIATAVCSDPGAIGNGFLPGQINVLMDPLPFVQSVSNLTISSG 185 F TTE +EIP G G+ D GA GNG LPGQIN L+ PLP++++V+NLT +SG Sbjct: 123 RVFETTEVLEIPIGALTGVVPVRAVDAGAGGNGLLPGQINTLITPLPYIKNVTNLTTTSG 182 Query: 186 GAAAETDEAFKERIRNAPESYSTAGPQGAYEFWAKSASSAIIDVHAYSPAEGRVTVVPLL 245 GA E D+ F ERI AP S+S AGP+ AY++W ++A+ I V SP G V V L+ Sbjct: 183 GADVENDDNFAERIHLAPASFSVAGPEDAYKYWTRTANQGIKAVSVNSPTPGVVDVRFLM 242 Query: 246 ADGEVPSQDVLDSISETLEDRGIRPLTDLVTVSAPQPVSYNTIVTYYISRSRASEVSSIQ 305 A G PSQ+V+D ++ L + IRPLTD V + P + Y + Y+IS ++ IQ Sbjct: 243 AGGIFPSQEVMDEVNSVLNAKTIRPLTDKVNILLPNNIDYEIDIEYWISNENKTQADLIQ 302 Query: 306 EKISAAVTAYQRWQKVKLGRHVNPSELISRIMAAGAQRVVPTAPVYTI 353 + + AV Y WQ+ + GR +NP L + +++A A+RV +P +T+ Sbjct: 303 KDVKKAVENYALWQRSEFGRDINPDMLNNLVVSARAKRVNIISPKFTV 350 >B6WRR4.1 B6WRR4_9DELT Putative uncharacterized protein Length = 379 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 151/346 (43%), Positives = 209/346 (60%), Gaps = 2/346 (0%) Query: 6 LPDILFSEEDAAAIQQDVITVYEGLAGRSLQPADPVRLFLSSLAAIIVQQKVLINQTAKG 65 LP + F+ + ++ ++T YEGL G SLQP DPVRLFL SLA ++ Q +L+N + Sbjct: 12 LPAVTFAPLSTSEVEASILTSYEGLTGVSLQPGDPVRLFLESLAYVVSVQNLLLNLAGQQ 71 Query: 66 NLLRYASGAVLDHMGAFQGSERLNASAAIVTLQFVLSIPLASATSIPTGTRVGAQGGNGS 125 LL YA GA LDH+GA G R+ A +A ++L+FVL PL A IP GTRV + +G Sbjct: 72 GLLAYAQGAHLDHLGALMGVSRIPAQSARLSLRFVLGEPLGFAVPIPEGTRVATK--DGQ 129 Query: 126 IFFSTTEYVEIPAGETAGIATAVCSDPGAIGNGFLPGQINVLMDPLPFVQSVSNLTISSG 185 I F+T EI AGE A+C+ GA G +PGQ+ L+DP+P+V SVSN T S Sbjct: 130 IAFATVSDSEIAAGELQVDVAALCTTSGAQATGLVPGQVTQLVDPIPYVVSVSNTTTSVE 189 Query: 186 GAAAETDEAFKERIRNAPESYSTAGPQGAYEFWAKSASSAIIDVHAYSPAEGRVTVVPLL 245 GA E DE +ERIR APE+Y+ AG GAYE + S+ I V SP G V V +L Sbjct: 190 GADIEDDERLRERIRLAPETYTVAGSTGAYEARVLAVSADIEAVSVTSPEPGVVDVRFVL 249 Query: 246 ADGEVPSQDVLDSISETLEDRGIRPLTDLVTVSAPQPVSYNTIVTYYISRSRASEVSSIQ 305 A GE+P + ++ + E L D +RPLTD V V+AP+ V Y +Y+ RS A +S + Sbjct: 250 AGGELPDEAMISMVREALSDETVRPLTDRVDVAAPETVDYAVSGRWYLRRSDAVLLSGVT 309 Query: 306 EKISAAVTAYQRWQKVKLGRHVNPSELISRIMAAGAQRVVPTAPVY 351 ++ AV ++ WQ+ + GR +NP+ LI+ + AAGA+RV AP + Sbjct: 310 AAVAQAVEDWRLWQRSQPGRDINPTRLIAAVQAAGAKRVELDAPAF 355 >C0FFR4.1 C0FFR4_9CLOT Putative uncharacterized protein Length = 384 Score = 272 bits (695), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 146/355 (41%), Positives = 218/355 (61%), Gaps = 10/355 (2%) Query: 5 ELPDILFSEEDA-AAIQQDVITVYEGLAGR------SLQPADPVRLFLSSLAAIIVQQKV 57 +LP++ F + D A++ ++ +E R +L P+DP R+ L ++A + Q + Sbjct: 10 DLPEVSFIDNDTLEAMKTRMVANFESEWKRITGQEITLSPSDPNRIMLYAIALELYQDEQ 69 Query: 58 LINQTAKGNLLRYASGAVLDHMGAFQGSERLNASAAIVTLQFVLSIPLASATSIPTGTRV 117 I++ K +L++Y+ G LD++GA +G R + A TL+F LS + IP GT+V Sbjct: 70 YIDRAGKQDLIKYSYGEFLDNLGAGRGVTRKQPAPAETTLRFTLSEKRPATVGIPEGTKV 129 Query: 118 GAQGGNGSIFFSTTEYVEIPAGETAGIATAVCSDPGAIGNGFLPGQINVLMDPLPFVQSV 177 N +F+T Y EIPAGET A+C++ G GN LPGQ+NVL+D +P+V+SV Sbjct: 130 TDGNLN---YFATVGYEEIPAGETYVDVRALCTENGVDGNELLPGQVNVLVDLIPYVESV 186 Query: 178 SNLTISSGGAAAETDEAFKERIRNAPESYSTAGPQGAYEFWAKSASSAIIDVHAYSPAEG 237 SN T +SGGA E+DE+ ERI AP YS AGP AY++W K+ S I DV SP Sbjct: 187 SNTTKTSGGADLESDESLAERIFLAPSGYSVAGPDDAYKYWTKTYSQTIGDVKVTSPNPV 246 Query: 238 RVTVVPLLADGEVPSQDVLDSISETLEDRGIRPLTDLVTVSAPQPVSYNTIVTYYISRSR 297 V + ++ +GE+P++ V+D ++ L+D IRPLTD VTV AP+ V +N TYY++ S Sbjct: 247 EVEIRFIMTNGELPTKTVIDGVAAYLQDENIRPLTDKVTVLAPETVKFNIAFTYYVNLSD 306 Query: 298 ASEVSSIQEKISAAVTAYQRWQKVKLGRHVNPSELISRIMAAGAQRVVPTAPVYT 352 S+ +IQ +++ AV Y WQ +GR +NPSEL+ RI+AAGA+R T+PV+T Sbjct: 307 QSKAGTIQAEVAQAVADYIEWQTRTIGRDINPSELMKRIVAAGAKRAEITSPVFT 361 >C2BG14.1 C2BG14_9FIRM Possible phage baseplate protein Length = 375 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 141/347 (40%), Positives = 208/347 (59%), Gaps = 5/347 (1%) Query: 7 PDILFSEEDAAAIQQDVITVYEGLAGRSLQPADPVRLFLSSLAAIIVQQKVLINQTAKGN 66 PDI + D + +I YE +A + L PADP+RLF+ +A I+VQQ+VLI+ +AK N Sbjct: 8 PDIQYVNTDTKELVNLLIQGYESIANKRLYPADPLRLFILWVADIMVQQRVLIDYSAKQN 67 Query: 67 LLRYASGAVLDHMGAFQGS--ERLNASAAIVTLQFVLSIPLASATSIPTGTRVGAQGGNG 124 + R+A G LD++ F + +RL AA +++ LS +AT IP G+R +G Sbjct: 68 IPRFAEGKYLDNLVEFLNNTIKRLPPQAATTRIRYTLSTKRETATVIPKGSRSTV---DG 124 Query: 125 SIFFSTTEYVEIPAGETAGIATAVCSDPGAIGNGFLPGQINVLMDPLPFVQSVSNLTISS 184 IFF TT+ + IP GETAG AVC+ G IGNGFLPGQI+ ++D +P+++ + NLT ++ Sbjct: 125 KIFFETTKDLVIPIGETAGDIEAVCTVVGEIGNGFLPGQISKIVDFVPYLEKIENLTATA 184 Query: 185 GGAAAETDEAFKERIRNAPESYSTAGPQGAYEFWAKSASSAIIDVHAYSPAEGRVTVVPL 244 GGA E+D++ R R A +YSTAGP+GAY F+AK+A+++I DV SP G + L Sbjct: 185 GGADTESDDSLYSRYREALSTYSTAGPEGAYRFYAKTANASIADVKTVSPTPGVAEIRVL 244 Query: 245 LADGEVPSQDVLDSISETLEDRGIRPLTDLVTVSAPQPVSYNTIVTYYISRSRASEVSSI 304 + DG +P ++ + +I + L IRPLTD V V A V Y ++YY + I Sbjct: 245 MKDGRLPEEETIKAIEKLLSAEDIRPLTDKVVVKAADKVGYKIDISYYGFKHGQLSAEGI 304 Query: 305 QEKISAAVTAYQRWQKVKLGRHVNPSELISRIMAAGAQRVVPTAPVY 351 ++ AV Y+ WQ K+GR +NPS+L +M G +RV P + Sbjct: 305 EKAAKFAVEKYKAWQSEKMGRDINPSKLNQMLMEEGIKRVEIRQPQF 351 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.130 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,989,474,377 Number of extensions: 80857418 Number of successful extensions: 180794 Number of sequences better than 1.0e-05: 298 Number of HSP's gapped: 180444 Number of HSP's successfully gapped: 300 Length of query: 375 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 238 Effective length of database: 1,770,017,148 Effective search space: 421264081224 Effective search space used: 421264081224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)