BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0017.p (183 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4J3V2.1 A4J3V2_DESRM Putative uncharacterized protein 92 2e-17 C4C199.1 C4C199_9FUSO Phage tail protein (Tail_P2_I) 89 2e-16 A8SB35.1 A8SB35_9FIRM Putative uncharacterized protein 87 8e-16 B0PEZ8.1 B0PEZ8_9FIRM Putative uncharacterized protein 80 9e-14 C4BYI9.1 C4BYI9_9FUSO Putative uncharacterized protein 76 1e-12 >A4J3V2.1 A4J3V2_DESRM Putative uncharacterized protein Length = 649 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 1/158 (0%) Query: 3 NIQTVSLLDLMPPSIRNDSXXXXXXXXLDTQLQGITNMIAALDIFGRSAEWTDAETDELA 62 +I VSLLD+MP S+ D LD +LQ I++ I + R + + + L Sbjct: 4 SIYDVSLLDIMPQSLLADPFIKAMAMALDPELQAISSEIILCSLLPRIDDLPEDIVNHLL 63 Query: 63 WQYNXXXXXXXXXXXQKRLLIKNAIAFHRHKGTAGAVEDLIAILF-GEGAVEEWWQYGGD 121 Q++ QKR L+K A+ +HR KGT VE+++++LF G+ V EW++YGG Sbjct: 64 VQFHVDFCYSDLTLDQKRTLVKQALPWHRRKGTPAMVEEVVSVLFGGDAKVSEWFEYGGQ 123 Query: 122 PYHFRVVTNNADVTTIRAQEFVSAVDAVKRLSAVLDSV 159 P++F++ T D T + AV+ K + L S+ Sbjct: 124 PFYFKIKTEAIDTTPAHLEAIRKAVNLAKNSRSWLQSI 161 >C4C199.1 C4C199_9FUSO Phage tail protein (Tail_P2_I) Length = 213 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 83/169 (49%) Query: 4 IQTVSLLDLMPPSIRNDSXXXXXXXXLDTQLQGITNMIAALDIFGRSAEWTDAETDELAW 63 I VSLLDL+P + ++D +D L+ I + + R E + + DELA Sbjct: 5 ISDVSLLDLIPFNFKDDEDTLYILKSIDHILRKFIANIPEVILLDRINELEEWKVDELAL 64 Query: 64 QYNXXXXXXXXXXXQKRLLIKNAIAFHRHKGTAGAVEDLIAILFGEGAVEEWWQYGGDPY 123 + QKR LIK ++ HR KGT AVE + ILFG G V+EW++Y G Sbjct: 65 DLHVDYYREDLDIEQKRELIKTSLLTHRTKGTPFAVEMISTILFGAGKVQEWFEYSGQVA 124 Query: 124 HFRVVTNNADVTTIRAQEFVSAVDAVKRLSAVLDSVTISQAEELPLYFG 172 F++ T Q+ + ++ K L + LDS+T + ++ LYFG Sbjct: 125 RFKITTAGDLKDEKDFQKVIEVINIYKNLRSWLDSLTFKRDDQSNLYFG 173 >A8SB35.1 A8SB35_9FIRM Putative uncharacterized protein Length = 222 Score = 86.7 bits (213), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 1/184 (0%) Query: 1 MINIQTVSLLDLMPPSIRNDSXXXXXXXXLDTQLQGITNMIAALDIFGRSAEWTDAETDE 60 MI IQ + D++P +R+D + Q++ + I+ A D D Sbjct: 6 MIKIQDIQPADILPEGLRDDVSALGIAYAVCRQIEKWCVFNDGIMIYYMIASLPDEILDL 65 Query: 61 LAWQYNXXXXXXXXXXXQKRLLIKNAIAFHRHKGTAGAVEDLIAILFGEGAVEEWWQYGG 120 +A +Y KR LI + + + GT AV +I +F G V EW++YGG Sbjct: 66 MAAEYRTPAYSTKYSTDVKRTLIADTMLYFMKLGTPMAVRRIITSIFQSGTVSEWFEYGG 125 Query: 121 DPYHFRVVTNNADVTTIRAQEFVSAVDAVKRLSAVLDSVTIS-QAEELPLYFGGFLHFGE 179 +P+HFR+ +N +V EFV + +VKRLS+ LDS++ E + G ++H G+ Sbjct: 126 EPHHFRINISNPNVGPNDLDEFVRQLRSVKRLSSWLDSISSKLDIEAATIGVGHWIHTGD 185 Query: 180 TITI 183 I + Sbjct: 186 FIRL 189 >B0PEZ8.1 B0PEZ8_9FIRM Putative uncharacterized protein Length = 210 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 82/158 (51%) Query: 2 INIQTVSLLDLMPPSIRNDSXXXXXXXXLDTQLQGITNMIAALDIFGRSAEWTDAETDEL 61 + + + L +L+P +R D ++ + ++ + L + + + + DEL Sbjct: 1 MKLSDLELRELIPIFMREDETVGALSTVVNEYTRRVSRELPLLHKWEQIDNMDNRQLDEL 60 Query: 62 AWQYNXXXXXXXXXXXQKRLLIKNAIAFHRHKGTAGAVEDLIAILFGEGAVEEWWQYGGD 121 AW+ N KR LIK + + GT AVE++I+ G +V+E+W+Y G Sbjct: 61 AWELNVLWYSPDAPVETKRRLIKKSDMVYARLGTKWAVEEVISAYLGRASVQEFWEYDGR 120 Query: 122 PYHFRVVTNNADVTTIRAQEFVSAVDAVKRLSAVLDSV 159 P++FR+V +N D + + ++F++ ++ VKR S L++V Sbjct: 121 PHYFRIVVDNYDFSNLDVKKFLAVLELVKRKSQWLEAV 158 >C4BYI9.1 C4BYI9_9FUSO Putative uncharacterized protein Length = 213 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 1/171 (0%) Query: 1 MINIQTVSLLDLMPPSIRNDSXXXXXXXXLDTQL-QGITNMIAALDIFGRSAEWTDAETD 59 M I VSL D +P + + D +D L + I + + R + D + + Sbjct: 1 MKRIYDVSLFDFIPFNFKGDKETEYIIETIDYLLRERFIKQIPEVILLDRVEQLEDWKVN 60 Query: 60 ELAWQYNXXXXXXXXXXXQKRLLIKNAIAFHRHKGTAGAVEDLIAILFGEGAVEEWWQYG 119 EL +++ QKR LIK ++ HR KGT A++ + ILF G V EW+ Y Sbjct: 61 ELFAEFHVDYYNKNVSIEQKRELIKTSLLTHRTKGTPFALKIITDILFKNGKVMEWFDYD 120 Query: 120 GDPYHFRVVTNNADVTTIRAQEFVSAVDAVKRLSAVLDSVTISQAEELPLY 170 GDPY F++ T + + + A++ K + L+S+ ++ +++ L+ Sbjct: 121 GDPYKFKISTQSDLKNQDDYDQTIQAIEIYKNARSWLESIIFNRTDDMELF 171 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 915,311,541 Number of extensions: 30073801 Number of successful extensions: 62540 Number of sequences better than 1.0e-05: 68 Number of HSP's gapped: 62568 Number of HSP's successfully gapped: 68 Length of query: 183 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 56 Effective length of database: 1,864,227,298 Effective search space: 104396728688 Effective search space used: 104396728688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)