BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0016.p (1172 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q24VI0.1 Q24VI0_DESHY Putative uncharacterized protein 155 2e-35 B7QPZ4.1 B7QPZ4_9RHOB Putative uncharacterized protein 123 1e-25 B3G110.1 B3G110_PSEAE Hypothetical bacteriophage protein 123 1e-25 B7UYN1.1 B7UYN1_PSEA8 Putative uncharacterized protein 115 2e-23 B7SDW2.1 B7SDW2_9CAUD Putative uncharacterized protein ORF54 115 2e-23 >Q24VI0.1 Q24VI0_DESHY Putative uncharacterized protein Length = 497 Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 73/151 (48%), Positives = 103/151 (68%) Query: 5 GGMTLTNKGLVLQGKAQAGAQLKYTRIAIGDGVLSGQSIPAMNALISQKKSLSITRLQTQ 64 GG TN+G +LQ KAQAG+ L +TR+A+GDG L I + LI+ KSL I + + Sbjct: 5 GGTIFTNRGRMLQAKAQAGSPLVFTRLAVGDGNLGSGVIDELTGLINPIKSLDINKFKVM 64 Query: 65 PPNKAVIGASLSNADITTGFYFREVGVFAQDPDAGEILYAYANAGVTAGYIAPGGGTDII 124 P ++V+G +L+N DI TGFY+RE+G+FA DPD GEILY Y NAG A YI GG +I+ Sbjct: 65 PGGRSVVGGNLTNQDIITGFYWRELGLFAADPDLGEILYCYGNAGALAEYIPSPGGAEIL 124 Query: 125 EKVFDCIVVVGTASNITATLDDSLVFARESE 155 EK D + ++G A+N++AT+D SLV+ + + Sbjct: 125 EKQVDIVAIIGNATNVSATIDSSLVYVTQED 155 >B7QPZ4.1 B7QPZ4_9RHOB Putative uncharacterized protein Length = 217 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 66/159 (41%), Positives = 96/159 (60%), Gaps = 2/159 (1%) Query: 1 VAVFGGMTLTNKGLVLQGKAQAGAQLKYTRIAIGDGVLSGQSIPAMNALISQKKSLSITR 60 +A F GM LT G LQ KAQ G +L++TR+A+G G I A+ L++++ SL I Sbjct: 1 MAAFPGMILTAAGRQLQAKAQIGQELQFTRVALGSGAAPA-DIEALQGLVAEEASLGIQS 59 Query: 61 LQTQPPNKAVIGASLSNADITTGFYFREVGVFAQDPDAG-EILYAYANAGVTAGYIAPGG 119 L + I L N + GF+ RE+G+FA DPDAG ++LYAY +AG TA ++ G Sbjct: 60 LDLVGDGTSRIRVVLVNQGVQAGFFIRELGLFAHDPDAGSDVLYAYTHAGQTADFLPAEG 119 Query: 120 GTDIIEKVFDCIVVVGTASNITATLDDSLVFARESEVTA 158 G ++E+ FD I VVG A N+TA ++D L A + ++ A Sbjct: 120 GATVVEQTFDLITVVGQAQNVTAVINDYLTLATKQDLAA 158 >B3G110.1 B3G110_PSEAE Hypothetical bacteriophage protein Length = 382 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 114/222 (51%), Gaps = 16/222 (7%) Query: 648 INMLGDSGRFVGPENDPKDYKCSDAFANSTFFSSWNGTSVADGGKFIYDNSTYGGAAGSL 707 +N++ DSGRF G N P + ++AF+ S+F + WNG S+ADGGK+IYDN+T+GG AG+L Sbjct: 157 LNLMPDSGRFAGNIN-PLILRFTEAFS-SSFLAPWNGASIADGGKYIYDNTTFGGTAGNL 214 Query: 708 NSDVASLVTAIGGS---TRYGPEYHIASYTMGP----GTYGPNATVPTAYLMTACSSMPA 760 N V L+ A+G S RYG E++ T GP G+ G + T T YL SS Sbjct: 215 NQRVQDLMAAMGRSGNVARYGVEFYTVVLTAGPNATTGSTGADGT--TRYLQMTNSSRAL 272 Query: 761 GGVASRFTVSFWIRLKTGTRVVID-----KDFRLRKNGVIQSAPVQLTSADGWMHIENVI 815 T FWIR + G+ +I D++L NG LT +DGW H+ Sbjct: 273 FIANGWCTAVFWIRAEAGSLHLIPAGFPTTDYKLWLNGTPVLPGQVLTPSDGWKHVRISK 332 Query: 816 GAGSGYSNGAPYIHATAGDVVQIALPXXXXXXXXXXXHKNPV 857 + GY NG PY++ G + +A P H P+ Sbjct: 333 KSAQGYDNGFPYLYMALGSIAAMACPAFFGGLVDPGIHVAPI 374 >B7UYN1.1 B7UYN1_PSEA8 Putative uncharacterized protein Length = 383 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 113/223 (50%), Gaps = 17/223 (7%) Query: 648 INMLGDSGRFVGPENDPKDYKCSDAFANSTFFSSWNGTSVADGGKFIYDNSTYGGAAGSL 707 +N++ DSGR+ G N P + ++AF+ STF + WNG S+ADGGK+IYDN+T GG AG+L Sbjct: 157 LNLMPDSGRYAGSIN-PLILRFTEAFS-STFLTPWNGASIADGGKYIYDNTTNGGTAGNL 214 Query: 708 NSDVASLVTAIGGST----RYGPEYHIASYTMGP----GTYGPNATVPTAYLMTACSSMP 759 N V L+ A+G S+ RYG E++ A T GP G+ G + T T YL SS Sbjct: 215 NQRVQDLLVAMGRSSGSLARYGVEFYTAVLTAGPNATTGSTGADGT--TRYLQMTNSSRA 272 Query: 760 AGGVASRFTVSFWIRLKTGTRVVID-----KDFRLRKNGVIQSAPVQLTSADGWMHIENV 814 T WIR + G+ + D+++ NG LT ADGW H+ Sbjct: 273 LFIANGWCTAVLWIRAEAGSLHFMPATAPTTDYKIWLNGAPVLPGQVLTPADGWKHVRIS 332 Query: 815 IGAGSGYSNGAPYIHATAGDVVQIALPXXXXXXXXXXXHKNPV 857 + GY NG P+++ + G +A P H P+ Sbjct: 333 KKSAQGYDNGFPFLYMSLGASAAMACPAFFGGLVDPGIHVAPI 375 >B7SDW2.1 B7SDW2_9CAUD Putative uncharacterized protein ORF54 Length = 383 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 113/223 (50%), Gaps = 17/223 (7%) Query: 648 INMLGDSGRFVGPENDPKDYKCSDAFANSTFFSSWNGTSVADGGKFIYDNSTYGGAAGSL 707 +N++ DSGR+ G N P + ++AF+ STF + WNG S+ADGGK+IYDN+T GG AG+L Sbjct: 157 LNLMPDSGRYAGSIN-PLILRFTEAFS-STFLTPWNGASIADGGKYIYDNTTNGGTAGNL 214 Query: 708 NSDVASLVTAIGGST----RYGPEYHIASYTMGP----GTYGPNATVPTAYLMTACSSMP 759 N V L+ A+G S+ RYG E++ A T GP G+ G + T T YL SS Sbjct: 215 NQRVQDLLVAMGRSSGSLARYGVEFYTAVLTAGPNATTGSTGADGT--TRYLQMTNSSRA 272 Query: 760 AGGVASRFTVSFWIRLKTGTRVVID-----KDFRLRKNGVIQSAPVQLTSADGWMHIENV 814 T WIR + G+ + D+++ NG LT ADGW H+ Sbjct: 273 LFIANGWCTAVLWIRAEAGSLHFMPATAPTTDYKIWLNGAPVLPGQVLTPADGWKHVRIS 332 Query: 815 IGAGSGYSNGAPYIHATAGDVVQIALPXXXXXXXXXXXHKNPV 857 + GY NG P+++ + G +A P H P+ Sbjct: 333 KKSAQGYDNGFPFLYMSLGASAAMACPAFFGGLVDPGIHVAPI 375 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.131 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 6,963,518,143 Number of extensions: 300601624 Number of successful extensions: 699715 Number of sequences better than 1.0e-05: 35 Number of HSP's gapped: 699732 Number of HSP's successfully gapped: 35 Length of query: 1172 Length of database: 3,060,696,203 Length adjustment: 147 Effective length of query: 1025 Effective length of database: 1,675,806,998 Effective search space: 1717702172950 Effective search space used: 1717702172950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 137 (57.4 bits)