BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0009.p (372 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLN5.1 B3KLN5_9BACI Putative uncharacterized protein 473 e-131 B1DJT7.1 B1DJT7_9BACL ATP-binding Mrp protein (Mrp/Nbp35 family) 381 e-104 Q5WLL7.1 Q5WLL7_BACSK ATP-binding Mrp protein 342 5e-92 C0ZIL6.1 C0ZIL6_BREBN Protein mrp homolog salA 341 6e-92 A6CSU0.1 A6CSU0_9BACI ATPase involved in chromosome partitioning 330 1e-88 >B3KLN5.1 B3KLN5_9BACI Putative uncharacterized protein Length = 364 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 249/370 (67%), Positives = 292/370 (78%), Gaps = 11/370 (2%) Query: 4 MLTREQIQELLQPLTDPESGKSLIELQLIRDIMVKEDRISLSLVCLDTDEKSRMELEQKV 63 MLTRE +QE+LQPL DPE+GKSL+ELQ IRDI+VKE + LS+ + E R LE ++ Sbjct: 1 MLTRETVQEILQPLRDPETGKSLMELQRIRDIVVKERTVRLSVTY--SSEDVRASLEAQI 58 Query: 64 RDLLTEGGAGNIHIRLRDATDYERSILRGESTE-DKPEPEQGGALKGHAAGLEGHELINK 122 R++L GA +IHIR+R + R E+ + DK KGHAAG+E + L+++ Sbjct: 59 REILEAMGAEDIHIRMRPLDNASNQANREEANDRDK-------LTKGHAAGMEQNTLLSE 111 Query: 123 DSGVNFIAIAXXXXXXXXXXXXXNLAVALARKGKKVGLIDADIYGFSIPDMMGIEEGP-I 181 SGV+FIAIA NLA ALAR+GK+VGLIDADIYGFS+PDMMGIEEGP + Sbjct: 112 QSGVHFIAIASGKGGVGKSTVTVNLAAALARQGKRVGLIDADIYGFSVPDMMGIEEGPSV 171 Query: 182 VEEGTIIPVERFGVKVMSMGFFIRENSPVIWRGPMLGKMLRQFFSDVGWGELDYMLLDLP 241 E+G I PVERFGVKVMSMGFFIRENSPVIWRGPMLGKMLRQFF+DV WG+LDYMLLDLP Sbjct: 172 TEDGVIHPVERFGVKVMSMGFFIRENSPVIWRGPMLGKMLRQFFTDVAWGDLDYMLLDLP 231 Query: 242 PGTGDVALDVHQMLPHSKEIIVTTPHATAAFVAARAGSMALQTDHEILGVIENMAYYECS 301 PGTGDVALDVHQM+P SKEIIVTTPHATAAFVAARAG+MALQTDHEILGV+ENM+YY CS Sbjct: 232 PGTGDVALDVHQMIPQSKEIIVTTPHATAAFVAARAGAMALQTDHEILGVVENMSYYVCS 291 Query: 302 SCGKKDYIFGRGGGARLAETLHTELLAQIPLGAPDNHISEPDFSPSVYKAETATAQLFAE 361 G+KDY+FGRGGG +LAETLHTELLAQ+PLGAPDNH SEPDFSPSVYK T +A ++ E Sbjct: 292 HGGEKDYVFGRGGGGKLAETLHTELLAQLPLGAPDNHPSEPDFSPSVYKPGTESAAIYEE 351 Query: 362 IADKLIANNE 371 IA ++ A E Sbjct: 352 IASRIAAKLE 361 >B1DJT7.1 B1DJT7_9BACL ATP-binding Mrp protein (Mrp/Nbp35 family) Length = 364 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 212/366 (57%), Positives = 268/366 (73%), Gaps = 9/366 (2%) Query: 4 MLTREQIQELLQPLTDPESGKSLIELQLIRDIMVKEDRISLSLVCLDTDEKSRMELEQKV 63 MLTREQ E + +T S S+ +RD++VK+ ++S+++ L E R LE + Sbjct: 1 MLTREQALEAVGSVTAQYSADSVT----VRDVVVKDRQVSMTV--LTASEDLRPSLETAL 54 Query: 64 RDLLTEGGAGNIHIRLRD-ATDYERSILRGESTEDKPEPEQG-GALKGHAAGLEGHELIN 121 RD L GA +H R R + + K +P G ++GH AG+E L+ Sbjct: 55 RDALARAGAETVHCRFRALESGAGAAAAPQGQAGGKAQPAAAKGPVQGHGAGIES-PLLA 113 Query: 122 KDSGVNFIAIAXXXXXXXXXXXXXNLAVALARKGKKVGLIDADIYGFSIPDMMGIEEGPI 181 SG FIA+A NLAVALARKGK+VG+IDADIYGFS+PDMMGIE P Sbjct: 114 AGSGTQFIAVASGKGGVGKSTVTVNLAVALARKGKRVGIIDADIYGFSVPDMMGIETRPE 173 Query: 182 VEEGTIIPVERFGVKVMSMGFFIRENSPVIWRGPMLGKMLRQFFSDVGWGELDYMLLDLP 241 + +IP+ER+GVKVMSMGFF+ +NSP++WRGPMLGKMLR FF+++ WGELDY+LLDLP Sbjct: 174 IVNERVIPIERYGVKVMSMGFFVEDNSPIVWRGPMLGKMLRNFFAEIEWGELDYLLLDLP 233 Query: 242 PGTGDVALDVHQMLPHSKEIIVTTPHATAAFVAARAGSMALQTDHEILGVIENMAYYECS 301 PGTGDVALDVHQ++P SKEIIVTTPHATAAFVAARAG+MA++T+HEI+GV+ENM+YY+CS Sbjct: 234 PGTGDVALDVHQIIPQSKEIIVTTPHATAAFVAARAGAMAIKTEHEIIGVVENMSYYKCS 293 Query: 302 SCGKKDYIFGRGGGARLAETLHTELLAQIPLGAPDNHISEPDFSPSVYKAETATAQLFAE 361 CG+ +YIFGRGGGARLAE+LH ELLAQIPLG PDNHISEPDFSPSVYKAE+ T L+ + Sbjct: 294 KCGEPEYIFGRGGGARLAESLHAELLAQIPLGQPDNHISEPDFSPSVYKAESETGALYLD 353 Query: 362 IADKLI 367 IA+++I Sbjct: 354 IAEQVI 359 >Q5WLL7.1 Q5WLL7_BACSK ATP-binding Mrp protein Length = 350 Score = 342 bits (876), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 189/368 (51%), Positives = 248/368 (67%), Gaps = 18/368 (4%) Query: 4 MLTREQIQELLQPLTDPESGKSLIELQLIRDIMVKEDRISLSLVCLDTDEKSRMELEQKV 63 M+T ++I E L+ + D + KS++E IR++ K +SL + T +M+++Q++ Sbjct: 1 MITDQEIMEALKRIKDRDLNKSIVETGGIRELKNKNGHVSLKVALAKTGTAEQMQVQQEI 60 Query: 64 RDLLTEGGAGNIHIRLRDATDYERSILRGESTEDKPEPEQGGALKGHAAGLEGHELINKD 123 ++L GA ++ +R T+ E L G K EP G AL + Sbjct: 61 VNVLKSEGAESVGLRFDTLTEEELDALGGL----KEEPFNGPAL------------LAPT 104 Query: 124 SGVNFIAIAXXXXXXXXXXXXXNLAVALARKGKKVGLIDADIYGFSIPDMMGIEEGPIVE 183 S FI +A N AV+LAR GKKVG+IDADIYGFS+PDMMGIEE P V Sbjct: 105 SKTTFITVASGKGGVGKSTVSVNTAVSLARLGKKVGIIDADIYGFSVPDMMGIEERPKVI 164 Query: 184 EGTIIPVERFGVKVMSMGFFIRENSPVIWRGPMLGKMLRQFFSDVGWGELDYMLLDLPPG 243 I PVERFGVKV+SMGFF+ +N+PVIWRGPMLGKM+ QFFS+ WGELDY++LDLPPG Sbjct: 165 NKRIHPVERFGVKVISMGFFVEDNAPVIWRGPMLGKMINQFFSECEWGELDYLILDLPPG 224 Query: 244 TGDVALDVHQMLPHSKEIIVTTPHATAAFVAARAGSMALQTDHEILGVIENMAYYECSSC 303 TGDVALD+H MLP SKE+IVTTPHATAAFVAARAG+MA++T+HE+LGV+ENMAY+E Sbjct: 225 TGDVALDLHSMLPGSKELIVTTPHATAAFVAARAGAMAIKTNHEMLGVVENMAYFESKVT 284 Query: 304 GKKDYIFGRGGGARLAETLHTELLAQIPLGAPDNHISEPDFSPSVYKAETATAQLFAEIA 363 G+K+Y+FG GGG RLAE L TELLAQIPLG P+ I E DF+PSVY E +++ +A Sbjct: 285 GEKEYVFGTGGGERLAEELKTELLAQIPLGQPE--IDENDFAPSVYAQEHPIGEIYHRLA 342 Query: 364 DKLIANNE 371 ++++ E Sbjct: 343 ERIVEKTE 350 >C0ZIL6.1 C0ZIL6_BREBN Protein mrp homolog salA Length = 370 Score = 341 bits (875), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 201/367 (54%), Positives = 258/367 (70%), Gaps = 9/367 (2%) Query: 4 MLTREQIQELLQPLTDPESGKSLIELQLIRDIMVKEDRISLSLVCLDTDEKSRMELEQKV 63 MLTREQ+ E L+ + DPE +SL+EL +IRDI ++ +SL++V + + ++E V Sbjct: 1 MLTREQVLEALRDVKDPEINRSLVELNMIRDIHIEGKTVSLTVVLTISGCPLKAKIEDDV 60 Query: 64 RDLLTEGGAGNIHIRLRDATDYERSILRGESTEDKPEPEQGGALKGHAAGLEG--HELIN 121 + GA +H++ TD ER+ L + ++ QGG G + ++ Sbjct: 61 IAAVKALGAEEVHLQFGSMTDEERAALSAQLRKN-----QGGQTHNMTPGQAPVLNPILA 115 Query: 122 KDSGVNFIAIAXXXXXXXXXXXXXNLAVALARKGKKVGLIDADIYGFSIPDMMGIEEGPI 181 KDS FIA+ NLAVALAR GKKVG+IDADIYGFS+PDMM IE+ P Sbjct: 116 KDSNTTFIAVTSGKGGVGKSTVTVNLAVALARLGKKVGIIDADIYGFSVPDMMNIEQRPT 175 Query: 182 VEEGTIIPVERFGVKVMSMGFFIRENSPVIWRGPMLGKMLRQFFSDVGWG-ELDYMLLDL 240 V TI+PVE+ VKVMSMGFF+ +NSP+IWRGPMLGKMLR FF++V WG ELDY+LLDL Sbjct: 176 VIGETILPVEKQNVKVMSMGFFVEDNSPIIWRGPMLGKMLRNFFTEVHWGEELDYLLLDL 235 Query: 241 PPGTGDVALDVHQMLPHSKEIIVTTPHATAAFVAARAGSMALQTDHEILGVIENMAYYEC 300 PPGTGD+ALDVH M+P S EI+VTTPHATAAFVAARAG+MA +T HEILG++ENMA+YE Sbjct: 236 PPGTGDMALDVHTMIPQSMEIVVTTPHATAAFVAARAGAMAKRTGHEILGIVENMAWYEA 295 Query: 301 SSCGKKDYIFGRGGGARLAETLHTELLAQIPLGAPDNHISEPDFSPSVYKAETATAQLFA 360 G K+Y+FGRGGGA+LAETL ELLAQIPLG PDNH SEPD+SPS+Y +T QL+ Sbjct: 296 KD-GTKEYVFGRGGGAKLAETLTCELLAQIPLGQPDNHPSEPDYSPSIYGEKTEIGQLYI 354 Query: 361 EIADKLI 367 ++A ++I Sbjct: 355 DMAKRVI 361 >A6CSU0.1 A6CSU0_9BACI ATPase involved in chromosome partitioning Length = 352 Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 190/366 (51%), Positives = 247/366 (67%), Gaps = 20/366 (5%) Query: 4 MLTREQIQELLQPLTDPESGKSLIELQLIRDIMVKEDR--ISLSLVCLDTDEKSRMELEQ 61 MLT +Q+++LL + DP K+L E + ++ +KE++ +S+ + T +M+++Q Sbjct: 1 MLTEQQVRDLLYKMKDPFLHKTLEETNGLLEVSIKEEKNHVSVKVAIAKTGTAEQMKMQQ 60 Query: 62 KVRDLLTEGGAGNIHIRLRDATDYERSILRGESTEDKPEPEQGGALKGHAAGLEGHELIN 121 ++ +L E GA + IR D + E RG +PE G E L++ Sbjct: 61 EIVKVLKENGAETVGIRFADLSPEELEKHRGS------QPEGG----------ESGNLLS 104 Query: 122 KDSGVNFIAIAXXXXXXXXXXXXXNLAVALARKGKKVGLIDADIYGFSIPDMMGIEEGPI 181 S FIAIA NLAV+LAR GKKVGL+DADIYGFS+PDMMGI P+ Sbjct: 105 PGSKTTFIAIASGKGGVGKSTVSVNLAVSLARAGKKVGLVDADIYGFSVPDMMGIVNRPV 164 Query: 182 VEEGTIIPVERFGVKVMSMGFFIRENSPVIWRGPMLGKMLRQFFSDVGWGELDYMLLDLP 241 V IIPVERFGVKV+SMGFF+ +N+PVIWRGPMLGKML FF +V WG+LDY+LLDLP Sbjct: 165 VRGEKIIPVERFGVKVISMGFFVEDNAPVIWRGPMLGKMLNNFFGEVEWGDLDYLLLDLP 224 Query: 242 PGTGDVALDVHQMLPHSKEIIVTTPHATAAFVAARAGSMALQTDHEILGVIENMAYYECS 301 PGTGDVALD+H MLP KEIIVTTPH TAAFVAARAG+MAL TDHEILGV+ENM+Y+E Sbjct: 225 PGTGDVALDIHTMLPQCKEIIVTTPHPTAAFVAARAGAMALSTDHEILGVVENMSYFESK 284 Query: 302 SCGKKDYIFGRGGGARLAETLHTELLAQIPLGAPDNHISEPDFSPSVYKAETATAQLFAE 361 + G+++Y+FGRGGG +LAE L T LL Q+PL PD +E DF+PSVY E +++ + Sbjct: 285 TTGEREYVFGRGGGEKLAEELRTNLLGQLPLQQPD--WNEDDFAPSVYDEEHRIGKVYGD 342 Query: 362 IADKLI 367 IA K+I Sbjct: 343 IAHKVI 348 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,198,157,795 Number of extensions: 93803038 Number of successful extensions: 226208 Number of sequences better than 1.0e-05: 1986 Number of HSP's gapped: 223111 Number of HSP's successfully gapped: 1986 Length of query: 372 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 235 Effective length of database: 1,770,017,148 Effective search space: 415954029780 Effective search space used: 415954029780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)