BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0006.p (202 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLN7.1 B3KLN7_9BACI KinB signaling pathway activation protein 182 1e-44 C0ZIL8.1 C0ZIL8_BREBN KinB signaling pathway activation protein 81 7e-14 C3AY78.1 C3AY78_BACMY KinB-signaling pathway activation protein 80 1e-13 C3BER9.1 C3BER9_9BACI KinB-signaling pathway activation protein 80 1e-13 C3IDM6.1 C3IDM6_BACTU KinB-signaling pathway activation protein 78 4e-13 >B3KLN7.1 B3KLN7_9BACI KinB signaling pathway activation protein Length = 197 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 94/190 (49%), Positives = 114/190 (60%) Query: 7 LNIKKWFFLFWTTXXXXXXXXXXXXXXXQTVNGTIHFKSTADTLIYPLILLGYGMLVSVY 66 ++++KW LF T Q NG I F AD LIYPLILLG G LVSVY Sbjct: 1 MSLRKWSKLFLKTLLVGAVAALIVGLILQLFNGAIEFTGMADLLIYPLILLGSGALVSVY 60 Query: 67 AQLGFFAYLILNYMGIGVFPRRXXXXXXXXXXXXXXXXXIFLRTFVGSGRDVSSDWXXXX 126 +Q+GFFAYL LNYMGIG+F R+ +F RTFVG + D Sbjct: 61 SQMGFFAYLTLNYMGIGIFRRKTWQYIQIVLAVLALLELMFFRTFVGGSTSLQQDLILGI 120 Query: 127 XXXXXXXXVAYFKVRSTNLTAWIPTFFFMTAITIVEIIGVLQIGVDSATVFIVIPLVACN 186 VAY KV+STN AWIPT FFM AI+IVEIIGVLQIGV +AT+F+V+PL+ CN Sbjct: 121 SILVIAIVVAYLKVKSTNANAWIPTLFFMMAISIVEIIGVLQIGVSNATIFMVVPLLICN 180 Query: 187 AFQILMLHRI 196 A+QIL LH++ Sbjct: 181 AYQILTLHKV 190 >C0ZIL8.1 C0ZIL8_BREBN KinB signaling pathway activation protein Length = 195 Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 2/159 (1%) Query: 45 STADTLIYPLILLGYGMLVSVYAQLGFFAYLILNYMGIGVFPRRXX-XXXXXXXXXXXXX 103 ST + + + L YGM +S+ AQ+GFFAY+ +NY +F Sbjct: 37 STGNFFVGLFMYLLYGMTISIVAQMGFFAYMTINYFAKTIFKTASLWKSVQVFLILFVFF 96 Query: 104 XXIFLR-TFVGSGRDVSSDWXXXXXXXXXXXXVAYFKVRSTNLTAWIPTFFFMTAITIVE 162 I+LR T G G+ + + AY KV TN +AWIPT FFM +T +E Sbjct: 97 DMIYLRYTSFGEGKGFGTYFIEPTLLLIVAIVTAYGKVSLTNKSAWIPTTFFMFVVTALE 156 Query: 163 IIGVLQIGVDSATVFIVIPLVACNAFQILMLHRILKPIS 201 I L+ AT+ +++PL+ CN +Q++ LHR++K S Sbjct: 157 WIPALKEDNVRATLSMLVPLLFCNVWQVMQLHRLVKRES 195 >C3AY78.1 C3AY78_BACMY KinB-signaling pathway activation protein Length = 204 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 3/157 (1%) Query: 48 DTLIYPLILLGYGMLVSVYAQLGFFAYLILNYMGIGVFPRRXX-XXXXXXXXXXXXXXXI 106 + L+ LLG G + SV +Q+GFFAYL ++ G+G+F + Sbjct: 44 EILMISFWLLGVGFIFSVISQMGFFAYLTVHRFGLGMFRSSTLWNAVQLFFIAFVLFDFV 103 Query: 107 FLRTFVGSGRDVS--SDWXXXXXXXXXXXXVAYFKVRSTNLTAWIPTFFFMTAITIVEII 164 +LR+ + + DVS ++ VAY K + TN A+IP FFM +TI+E + Sbjct: 104 YLRSVLVANGDVSFGNNILVAGMLFLFGALVAYIKSKETNKKAFIPALFFMVVVTILEWV 163 Query: 165 GVLQIGVDSATVFIVIPLVACNAFQILMLHRILKPIS 201 L+I +VIPL+ CNA+Q+L+LHR++ S Sbjct: 164 PALRINDTDWLYLMVIPLLLCNAYQLLILHRLIGQRS 200 >C3BER9.1 C3BER9_9BACI KinB-signaling pathway activation protein Length = 204 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 3/157 (1%) Query: 48 DTLIYPLILLGYGMLVSVYAQLGFFAYLILNYMGIGVFPRRXX-XXXXXXXXXXXXXXXI 106 + L+ LLG G + SV +Q+GFFAYL ++ G+G+F + Sbjct: 44 EILMISFWLLGVGFIFSVISQMGFFAYLTVHRFGLGMFRSSALWNAVQLFFIAFVLFDFV 103 Query: 107 FLRTFVGSGRDVS--SDWXXXXXXXXXXXXVAYFKVRSTNLTAWIPTFFFMTAITIVEII 164 +LR+ + + DVS ++ VAY K + TN A+IP FFM +TI+E + Sbjct: 104 YLRSVLVANGDVSFGNNILVAGMLFLFGALVAYIKSKETNKKAFIPALFFMVVVTILEWV 163 Query: 165 GVLQIGVDSATVFIVIPLVACNAFQILMLHRILKPIS 201 L+I +VIPL+ CNA+Q+L+LHR++ S Sbjct: 164 PALRINDTDWLYLMVIPLLLCNAYQLLILHRLIGQRS 200 >C3IDM6.1 C3IDM6_BACTU KinB-signaling pathway activation protein Length = 203 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 5/200 (2%) Query: 7 LNIKKWFFLFWTTXXXXXXXXXXXXXXXQTVNGTIHFKS--TADTLIYPLILLGYGMLVS 64 +N +KW LF TT + FK+ + L L+G G + S Sbjct: 1 MNSRKWVRLFLTTLFLGGISTVIIGFVLEWDRYNEFFKNFDVKEILAVSFWLMGVGFIFS 60 Query: 65 VYAQLGFFAYLILNYMGIGVFPRRXX-XXXXXXXXXXXXXXXIFLRTFVGSGRDVS--SD 121 V +Q+GFFAYL ++ G+G+F ++LR+ + + +VS ++ Sbjct: 61 VISQMGFFAYLTIHRFGLGMFRSSSLWNAVQLFFIAFVLFDFVYLRSVLIANGEVSLGNN 120 Query: 122 WXXXXXXXXXXXXVAYFKVRSTNLTAWIPTFFFMTAITIVEIIGVLQIGVDSATVFIVIP 181 VAY K + TN A++P FFM +TI+E + L+I +VIP Sbjct: 121 ILVAGILFVFGAIVAYVKSKETNKKAFVPALFFMVVVTILEWVPALRINDTDWLYLMVIP 180 Query: 182 LVACNAFQILMLHRILKPIS 201 L+ CNA+Q+L+LHR++ S Sbjct: 181 LLLCNAYQLLVLHRLIGKTS 200 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.333 0.145 0.463 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 865,265,735 Number of extensions: 26119665 Number of successful extensions: 109548 Number of sequences better than 1.0e-05: 89 Number of HSP's gapped: 109448 Number of HSP's successfully gapped: 89 Length of query: 202 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 73 Effective length of database: 1,845,385,268 Effective search space: 134713124564 Effective search space used: 134713124564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 128 (53.9 bits)