BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0005.p (273 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D6K3.1 B1D6K3_9BACL Putative uncharacterized protein 268 4e-70 C1XHI4.1 C1XHI4_MEIRU Polyphosphate:AMP phosphotransferase EC=2.... 250 9e-65 A9LH30.1 A9LH30_9BACT Putative uncharacterized protein 234 4e-60 A6T467.1 A6T467_JANMA Uncharacterized conserved protein 232 3e-59 B2JJW4.1 B2JJW4_BURP8 Putative uncharacterized protein 231 4e-59 >B1D6K3.1 B1D6K3_9BACL Putative uncharacterized protein Length = 276 Score = 268 bits (685), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 128/260 (49%), Positives = 166/260 (63%) Query: 3 IKRYMIKDTNESVLKKLDPDESGDFXXXXXXXXXXXXXXXXXXXXQDILFAQKKHSLLVI 62 +K Y + ++ L + DP+++G F QD LFA K + +LV+ Sbjct: 2 LKNYRLTKADKRGLSRFDPNDTGGFVSKEDIQDEFEQMERKLRNLQDKLFASKTNGVLVL 61 Query: 63 LQGMDSSGKDGTVKHIFSGINPQGFMVTSFKKPSLEEEAHDFLWRVHMKTPPKGYIAAFN 122 QGMD SGKDG +K + S +NPQGF SFKKP+LEE AHDFLWR H P KGYI AFN Sbjct: 62 FQGMDCSGKDGVIKKVLSNLNPQGFRAESFKKPTLEESAHDFLWRTHKVVPAKGYITAFN 121 Query: 123 RSHYEDVLVPRVHGTLKKEERKRRFRYIREFEAMLAEEGTTIIKLFLHISKDKQLEKIQE 182 RS+YEDVL+ RVHG ++ EE R ++IR FE +L G +IK+FLHIS + QLEKI+E Sbjct: 122 RSYYEDVLITRVHGLIQDEEAATRMKHIRHFEKLLTNNGVLLIKIFLHISPEFQLEKIRE 181 Query: 183 RLQDPAKHWKFDASDLQERXXXXXXXXXXXXVFKETSTDTAPWYWIPANHRWYRNYLALA 242 RL +P K WKFDASDL ER F+ T+T+ APW+ +PAN RW+R+YL L Sbjct: 182 RLSNPEKLWKFDASDLSERHYWDSYIDAYEDAFRHTATNHAPWHIVPANERWFRDYLVLR 241 Query: 243 IVVKTLEGLDLSYPKLDTPT 262 I++ +LE LDLSYP+ D T Sbjct: 242 IILSSLEKLDLSYPEPDIDT 261 >C1XHI4.1 C1XHI4_MEIRU Polyphosphate:AMP phosphotransferase EC=2.7.4.- Length = 271 Score = 250 bits (639), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 120/265 (45%), Positives = 169/265 (63%), Gaps = 1/265 (0%) Query: 2 NIKRYMIKDTNESVLKKLDPDESGDFXX-XXXXXXXXXXXXXXXXXXQDILFAQKKHSLL 60 +K+Y ++ LK+ DPD++ F Q++L+A+ +H +L Sbjct: 4 QMKKYRVQPDGRFELKRFDPDDTSAFEGGKQAALEALAVLNRRLEKLQELLYAEGQHKVL 63 Query: 61 VILQGMDSSGKDGTVKHIFSGINPQGFMVTSFKKPSLEEEAHDFLWRVHMKTPPKGYIAA 120 V+LQ MD+ GKDGT++ +F G+NP G V SF P+ +E A D+LWRVH + P KG + Sbjct: 64 VVLQAMDAGGKDGTIRVVFDGVNPSGVRVASFGVPTEQELARDYLWRVHQQVPRKGELVI 123 Query: 121 FNRSHYEDVLVPRVHGTLKKEERKRRFRYIREFEAMLAEEGTTIIKLFLHISKDKQLEKI 180 FNRSHYEDVLV RV + ++ ++R+R+IREFE MLA+EGTTI+K FLHISKD+Q +++ Sbjct: 124 FNRSHYEDVLVVRVKNLVPQQVWQKRYRHIREFERMLADEGTTILKFFLHISKDEQRQRL 183 Query: 181 QERLQDPAKHWKFDASDLQERXXXXXXXXXXXXVFKETSTDTAPWYWIPANHRWYRNYLA 240 QERL +P K WKF DL++R +ETST+ APWY IPAN WYRN+L Sbjct: 184 QERLDNPEKRWKFRMGDLEDRRLWDRYQEAYEAAIRETSTEYAPWYVIPANKNWYRNWLV 243 Query: 241 LAIVVKTLEGLDLSYPKLDTPTPDI 265 I+V+TLEGL + YP+ +T + I Sbjct: 244 SHILVETLEGLAMQYPQPETASEKI 268 >A9LH30.1 A9LH30_9BACT Putative uncharacterized protein Length = 267 Score = 234 bits (598), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 111/255 (43%), Positives = 157/255 (61%), Gaps = 1/255 (0%) Query: 3 IKRYMIKDTNESVLKKLDPDESGDFXXXXXXXX-XXXXXXXXXXXXQDILFAQKKHSLLV 61 +++Y++ T ++ L +P+++G Q++L+AQ KH +L+ Sbjct: 1 MEKYLVDPTQKTTLDHWNPNDNGGIKNGKKRTRPLFAELNQELERLQELLYAQSKHKVLI 60 Query: 62 ILQGMDSSGKDGTVKHIFSGINPQGFMVTSFKKPSLEEEAHDFLWRVHMKTPPKGYIAAF 121 +LQ D+ GKDGT++H+F G+NPQG V SFK+P+ E AHDFLWR H + P G I F Sbjct: 61 VLQATDTGGKDGTIRHVFDGVNPQGVRVASFKQPTKAELAHDFLWRAHQQAPRNGEIVIF 120 Query: 122 NRSHYEDVLVPRVHGTLKKEERKRRFRYIREFEAMLAEEGTTIIKLFLHISKDKQLEKIQ 181 NRSHYEDVLV RVH + + + +R+ +I FE MLA+EG TI+K FLHI D+Q E++Q Sbjct: 121 NRSHYEDVLVVRVHNLVPRNQWLKRYEHINAFEKMLADEGATILKFFLHIDADQQKERLQ 180 Query: 182 ERLQDPAKHWKFDASDLQERXXXXXXXXXXXXVFKETSTDTAPWYWIPANHRWYRNYLAL 241 +RL P K+WKF SDL ER + +TS A WY IPAN +WYRN L Sbjct: 181 DRLDRPEKNWKFSKSDLNERAYWSDYQKAFEEMLSKTSQSWATWYVIPANRKWYRNLLIS 240 Query: 242 AIVVKTLEGLDLSYP 256 I+V+ L+ LDL++P Sbjct: 241 KIIVEKLQQLDLAFP 255 >A6T467.1 A6T467_JANMA Uncharacterized conserved protein Length = 269 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 109/221 (49%), Positives = 153/221 (69%), Gaps = 3/221 (1%) Query: 48 QDILFAQKKHSLLVILQGMDSSGKDGTVKHIFSGINPQGFMVTSFKKPSLEEEAHDFLWR 107 Q+IL+A++KH +L++LQGMD+SGKDGTV+ +F I+P G +FK PS EE+AHDFLWR Sbjct: 49 QEILYAERKHKILIVLQGMDTSGKDGTVRGVFGKIDPLGVSSVAFKSPSTEEKAHDFLWR 108 Query: 108 VHMKTPPKGYIAAFNRSHYEDVLVPRVHGTLKKEERKRRFRYIREFEAMLAEEGTTIIKL 167 +H + P G FNRSHYEDVL+ RVH + +E KRR+++IR+FE ML+E GT I+K Sbjct: 109 IHKQVPALGEFTIFNRSHYEDVLITRVHDWIDDKECKRRYQHIRDFERMLSETGTVIMKF 168 Query: 168 FLHISKDKQLEKIQERLQDPAKHWKFDASDLQERXXXXXXXXXXXXVFKETSTDTAPWYW 227 FLHIS D+Q ++++ER+ DP KHWKFD +DL+ER V +ET D APWY Sbjct: 169 FLHISADEQKKRLEERIADPNKHWKFDPADLEERKYWGAYQDQYEEVIRETDADHAPWYV 228 Query: 228 IPANHRWYRNYLALAIVVKTLEGLDLSYPKLDTPTPDISQL 268 IPA+ + +RN + +IV++ L L ++P P+ S+L Sbjct: 229 IPADSKTHRNLVISSIVLEKLNKLKPAFP---PGNPEFSKL 266 >B2JJW4.1 B2JJW4_BURP8 Putative uncharacterized protein Length = 278 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 108/209 (51%), Positives = 142/209 (67%) Query: 48 QDILFAQKKHSLLVILQGMDSSGKDGTVKHIFSGINPQGFMVTSFKKPSLEEEAHDFLWR 107 Q+ L AQ+ +L++LQGMD+SGKDGT++ +F ++P G + FK P+L E AHDFLWR Sbjct: 58 QERLHAQRVQRVLLVLQGMDTSGKDGTIRAVFHEVDPLGLRIVPFKAPTLNELAHDFLWR 117 Query: 108 VHMKTPPKGYIAAFNRSHYEDVLVPRVHGTLKKEERKRRFRYIREFEAMLAEEGTTIIKL 167 VH + P G + FNRSHYEDVLVP V GTL K+ER RRF +IREFE MLA+ GTTIIK Sbjct: 118 VHSQAPAAGELTIFNRSHYEDVLVPYVLGTLSKDERDRRFGHIREFERMLADHGTTIIKC 177 Query: 168 FLHISKDKQLEKIQERLQDPAKHWKFDASDLQERXXXXXXXXXXXXVFKETSTDTAPWYW 227 LHISKD+Q E++Q R+ DP KHWKFD SDL R TST+ APW+ Sbjct: 178 MLHISKDEQRERLQARIDDPTKHWKFDVSDLDARKLWDKYQAAYEDALAATSTEYAPWHV 237 Query: 228 IPANHRWYRNYLALAIVVKTLEGLDLSYP 256 +PAN + +RN + +++++ E L L +P Sbjct: 238 VPANSKTHRNVMIGELLLRSFESLKLEFP 266 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,492,997,040 Number of extensions: 55695064 Number of successful extensions: 124675 Number of sequences better than 1.0e-05: 1068 Number of HSP's gapped: 124395 Number of HSP's successfully gapped: 1183 Length of query: 273 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 139 Effective length of database: 1,798,280,193 Effective search space: 249960946827 Effective search space used: 249960946827 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)