BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0004.p (149 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLN8.1 B3KLN8_9BACI Polysaccharide deacetylase family sporulat... 226 6e-58 B1DJT4.1 B1DJT4_9BACL Polysaccharide deacetylase family sporulat... 218 2e-55 C0ZIL9.1 C0ZIL9_BREBN Putative polysaccharide deacetylase 189 5e-47 Q3ABR5.1 Q3ABR5_CARHZ Polysaccharide deacetylase family protein 152 9e-36 B7DRV7.1 B7DRV7_9BACL Polysaccharide deacetylase family sporulat... 152 1e-35 >B3KLN8.1 B3KLN8_9BACI Polysaccharide deacetylase family sporulation protein PdaB Length = 267 Score = 226 bits (576), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 104/148 (70%), Positives = 122/148 (82%) Query: 2 NYSALSNEEIKNQITTAHTVLTELTGKEPNLIRMPNGDFDKRVLQVATDLGYKVIQWDTD 61 NYS L++EEI+ QI++AHT+LT +TG+EP LIRMPNGDFDKRVL +A L Y VIQWDTD Sbjct: 120 NYSTLTDEEIRKQISSAHTILTAMTGQEPKLIRMPNGDFDKRVLSIAQSLNYTVIQWDTD 179 Query: 62 SLDWKNIGVDNIVRRVTSKAHPGDIVLLHASDSCKQTHEALPQIIDNLRSQGYEFVTVSE 121 S DWKNIGV+ IV RV SKAHPGDIVL+HASDS KQTHEALP II LR+QGYEFVTV++ Sbjct: 180 SRDWKNIGVEKIVDRVVSKAHPGDIVLMHASDSVKQTHEALPLIIKELRNQGYEFVTVTD 239 Query: 122 LISQGSAEGKEVRDSAMLNDGLEDAAGM 149 L+ QGS +G EVRD A L +EDA G+ Sbjct: 240 LLQQGSTQGTEVRDHASLQKSIEDAGGL 267 >B1DJT4.1 B1DJT4_9BACL Polysaccharide deacetylase family sporulation protein PdaB Length = 274 Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 102/147 (69%), Positives = 126/147 (85%), Gaps = 2/147 (1%) Query: 2 NYSALSNEEIKNQITTAHTVLTELTGKEPNLIRMPNGDFDKRVLQVATDLGYKVIQWDTD 61 NYS LS++EI+ QITTAHT+LT+LTGK+PNLIR+PNGDFDKRVL++A +L YKVIQWDTD Sbjct: 120 NYSKLSDDEIRTQITTAHTILTDLTGKQPNLIRLPNGDFDKRVLRIAEELNYKVIQWDTD 179 Query: 62 SLDWKNIGVDNIVRRVTSKAHPGDIVLLHASDSCKQTHEALPQIIDNLRSQGYEFVTVSE 121 S+DW NIG D I+ RV S+AH GDI+L+HASDS KQTHEALP IID LR++GYEFVTVSE Sbjct: 180 SMDWLNIGTDKIINRVVSRAHNGDIILMHASDSVKQTHEALPVIIDELRAKGYEFVTVSE 239 Query: 122 LISQGSAEGKEVRD--SAMLNDGLEDA 146 LI+Q +EG+ V+D +++ GLEDA Sbjct: 240 LINQTESEGRAVQDKTTSLTMLGLEDA 266 >C0ZIL9.1 C0ZIL9_BREBN Putative polysaccharide deacetylase Length = 256 Score = 189 bits (481), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 90/132 (68%), Positives = 104/132 (78%) Query: 2 NYSALSNEEIKNQITTAHTVLTELTGKEPNLIRMPNGDFDKRVLQVATDLGYKVIQWDTD 61 NY+ S+EEI++Q+ A ++LTE+TGK+P LIRMPNGDFDKRVL++A +GY VIQWDTD Sbjct: 124 NYTKYSDEEIRSQMGKADSILTEMTGKKPTLIRMPNGDFDKRVLEIANRMGYSVIQWDTD 183 Query: 62 SLDWKNIGVDNIVRRVTSKAHPGDIVLLHASDSCKQTHEALPQIIDNLRSQGYEFVTVSE 121 S DW N G D I+ V SKAHPGDIVL+HASDS K TH ALP IID LR GYEFVTVSE Sbjct: 184 SKDWTNPGTDVIINNVLSKAHPGDIVLMHASDSAKDTHLALPVIIDQLRKDGYEFVTVSE 243 Query: 122 LISQGSAEGKEV 133 LIS S E KEV Sbjct: 244 LISGTSVESKEV 255 >Q3ABR5.1 Q3ABR5_CARHZ Polysaccharide deacetylase family protein Length = 248 Score = 152 bits (384), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 65/128 (50%), Positives = 91/128 (71%) Query: 1 VNYSALSNEEIKNQITTAHTVLTELTGKEPNLIRMPNGDFDKRVLQVATDLGYKVIQWDT 60 VNY+ LS EEIK ++ AH + E + K P +IR+PNGD++K V++ ++GY IQW Sbjct: 118 VNYTGLSPEEIKKEVVLAHEAIKEASNKTPTIIRLPNGDYNKTVIKTLREIGYTAIQWSV 177 Query: 61 DSLDWKNIGVDNIVRRVTSKAHPGDIVLLHASDSCKQTHEALPQIIDNLRSQGYEFVTVS 120 DSLDWKN G + I++RV HPG I+L+HASD+CKQT + LP+II L+ QGY F+T+S Sbjct: 178 DSLDWKNPGEEIILKRVLDSIHPGAIILMHASDTCKQTGQVLPEIIKELKKQGYTFITIS 237 Query: 121 ELISQGSA 128 L++ G A Sbjct: 238 RLLTLGPA 245 >B7DRV7.1 B7DRV7_9BACL Polysaccharide deacetylase family sporulation protein PdaB Length = 250 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 70/130 (53%), Positives = 92/130 (70%) Query: 2 NYSALSNEEIKNQITTAHTVLTELTGKEPNLIRMPNGDFDKRVLQVATDLGYKVIQWDTD 61 +YS + I+ Q A + ++TG +P L R PNGD + RV++ T +GY V+QW+TD Sbjct: 119 DYSNYPDSWIREQAMLADKAIHQVTGVKPKLFRTPNGDLNPRVIRCLTSMGYTVVQWNTD 178 Query: 62 SLDWKNIGVDNIVRRVTSKAHPGDIVLLHASDSCKQTHEALPQIIDNLRSQGYEFVTVSE 121 SLDWKN GVD IV RVT + PGDIVL+HASDS KQ EALP+I++NLR QGY FVTVSE Sbjct: 179 SLDWKNPGVDAIVNRVTKRVVPGDIVLMHASDSSKQIVEALPRIVENLRQQGYRFVTVSE 238 Query: 122 LISQGSAEGK 131 L++ + + K Sbjct: 239 LLAGANVQSK 248 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.131 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 848,793,062 Number of extensions: 31546458 Number of successful extensions: 89369 Number of sequences better than 1.0e-05: 1327 Number of HSP's gapped: 88634 Number of HSP's successfully gapped: 1327 Length of query: 149 Length of database: 3,060,696,203 Length adjustment: 111 Effective length of query: 38 Effective length of database: 2,014,963,538 Effective search space: 76568614444 Effective search space used: 76568614444 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 126 (53.1 bits)