BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0002.p
         (203 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KLN9.1 B3KLN9_9BACI Putative uncharacterized protein                129   1e-28
B1DJT3.1 B1DJT3_9BACL Putative uncharacterized protein                 81   7e-14
Q8TJT9.1 Q8TJT9_METAC Integral membrane protein                        54   1e-05

>B3KLN9.1 B3KLN9_9BACI Putative uncharacterized protein
          Length = 202

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/203 (42%), Positives = 109/203 (53%), Gaps = 1/203 (0%)

Query: 1   MLSFPAFARDLSTIRKXXXXXXXXXXXXXXIGWIGTGSLQKLLSGQLEGLSKISGSLKES 60
           ML F  F RDL +IRK               G    G  ++ L GQL+GL +IS  L  S
Sbjct: 1   MLRFSIFLRDLRSIRKALLLAAVLFIAGIAAGASSEG-FEQFLLGQLQGLGEISQQLGSS 59

Query: 61  AHPQWSFFQFIFLNNSIKGVXXXXXXXXXXXXPALFLLINGGVIGYLIHISAMQGMDLFD 120
            HP+W+FF FIFLNNSIK V            P  FL++NG VIG+L+ +    G  LFD
Sbjct: 60  DHPEWNFFVFIFLNNSIKSVLVMFSGLLLGVIPFFFLVVNGMVIGFLVKVVGESGESLFD 119

Query: 121 LIVKGLLPHGXXXXXXXXXXXXFGLQFGWNVISDLFSSAAAREKRSGAWPAFMRQTLRAS 180
           LIVKGLLPHG            +GL FG  V+  + ++   R      W  F R+   AS
Sbjct: 120 LIVKGLLPHGIIEIPVIVIACGYGLAFGGLVLRSVVATGERRSGIGAEWRGFWRKLGTAS 179

Query: 181 IWIVILLFVAAIIESTITFSLLS 203
           +W+V+LL VAA+IESTIT  L+S
Sbjct: 180 LWVVVLLLVAAMIESTITLWLMS 202


>B1DJT3.1 B1DJT3_9BACL Putative uncharacterized protein
          Length = 207

 Score = 80.9 bits (198), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 9/171 (5%)

Query: 35  GTGS-LQKLLSGQLEGLSKISGSLKESAHPQWSFFQFIFLNNSIKGVXXXXXXXXXXXXP 93
           GT S     L  QL+ L  ++ SL+++ +P  +F  FIFLNN+IK +            P
Sbjct: 33  GTNSAFSDYLEQQLKALGNVAESLEQTKNPTLAFMVFIFLNNAIKSIFIIYIGAIFGIIP 92

Query: 94  ALFLLINGGVIGYLI-HISAMQGMDLFDLIVKGLLPHGXXXXXXXXXXXXFGLQFGWNVI 152
             FL++NG V+G+L+ H++  QG      ++ GLLPHG            +G++FG  ++
Sbjct: 93  IFFLVLNGMVVGFLLQHVAETQGTGDMLTVILGLLPHGIIEIPAIVVACAYGMKFGVLLL 152

Query: 153 SDL-----FSSAAAREKRSGAWPAFMRQTLRASIWIVILLFVAAIIESTIT 198
             L         A +  R   +  FM +++   + + + L VAA+IEST++
Sbjct: 153 KALGRIVIPGKEAGKSGREIEY--FMIRSVPVVVILTVALLVAAVIESTVS 201


>Q8TJT9.1 Q8TJT9_METAC Integral membrane protein
          Length = 263

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 60/130 (46%), Gaps = 12/130 (9%)

Query: 71  IFLNNSIKGVXXXXXXXXXXXXPALFLLINGGVIGYLIHISAMQGMDLFDLIVKGLLPHG 130
           IFLNN+   +            P LF+  NG ++G + H+ A +   LF  IV  LLPHG
Sbjct: 137 IFLNNAFVSLLFLILGLAFGVLPVLFVAFNGYIVGVISHLVAQERGLLF--IVLALLPHG 194

Query: 131 XXXXXXXXXXXXFGLQFGWNVISDLF--SSAAAREKRSGAWPAFMRQTLRASIWIVILLF 188
                        GL+ G  V + L    +   +E + G     MR   R   WIV LLF
Sbjct: 195 ILELPMVFLAAGIGLRLGHQVFAALIGRHTEIKKEFKGG-----MRFYFR---WIVPLLF 246

Query: 189 VAAIIESTIT 198
           VAA++E+ IT
Sbjct: 247 VAAVVETFIT 256


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.327    0.141    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 880,309,982
Number of extensions: 26551642
Number of successful extensions: 64725
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 64725
Number of HSP's successfully gapped: 7
Length of query: 203
Length of database: 3,060,696,203
Length adjustment: 129
Effective length of query: 74
Effective length of database: 1,845,385,268
Effective search space: 136558509832
Effective search space used: 136558509832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)