BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0026.p (388 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B4AI48.1 B4AI48_BACPU Acyl CoA dehydrogenase 389 e-106 A8FAR0.1 A8FAR0_BACP2 Possible acyl-CoA dehydrogenase (NADP(+)) ... 388 e-106 C3AKB3.1 C3AKB3_BACMY Acyl-CoA dehydrogenase (NADP(+)) 372 e-101 B5UXK5.1 B5UXK5_BACCE Acyl-CoA dehydrogenase domain protein 365 5e-99 C3I383.1 C3I383_BACTU Acyl-CoA dehydrogenase (NADP(+)) 362 4e-98 >B4AI48.1 B4AI48_BACPU Acyl CoA dehydrogenase Length = 380 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 185/369 (50%), Positives = 267/369 (72%), Gaps = 3/369 (0%) Query: 12 LEEVKQFVEEDIRPFAADFEEQQALPRELIRKMGRKGYLGASFPEEFGGLELDPLEYGSL 71 +EE++Q+ +E IRPFA +F+E + LP LIR M ++GYL A P + GL LDP+ YG Sbjct: 11 IEEIRQYCDEHIRPFANEFDETEHLPESLIRDMAKRGYLAAGIPSSYQGLGLDPIAYGQF 70 Query: 72 VEEIGKGALSAAMLLTVSTGLVGETLIRWGTKYQQQKYVLPIARGEKIGAFALTEPGVGS 131 E++GK + LLTV++ LVGE ++R+GT+ Q+Q +++ +A+GEKIGAFAL+EP +GS Sbjct: 71 TEQVGKACCNVRTLLTVNS-LVGEAILRYGTEDQKQGWLVELAKGEKIGAFALSEPNIGS 129 Query: 132 GAKDVESAYEKVGDNYRITGRKKWISFGEIADFFIVIAAEPSSKAVSAFLVDRNLEGVKI 191 A VE++Y+K G +Y + G+KKWISFG IADFFIVIA + + V+AFLVDR+ GV+I Sbjct: 130 DANHVETSYQKEGQSYVLNGKKKWISFGAIADFFIVIARD--GEQVTAFLVDRDQPGVEI 187 Query: 192 KKMQGLLSCAASQLADIELTGVEVGPEMMVGKEGMGFAGIANFALDYGRFNVAWMGVGLA 251 +++ G+++ AS LA+I L V+V + ++G G GF + + ALD+GR++VAW G+ +A Sbjct: 188 ERITGMMANRASYLAEITLDHVQVHEDCVLGPVGGGFNHVVSLALDHGRYSVAWAGLAIA 247 Query: 252 QEALEVMVTYARKRSQSGQKIFHHQLIKGIIGDNVTNIMAARSLCKEAARMRIENHPDAA 311 QEA++ +VTY+RKR+Q +K++ HQ+IKG+IGD VT + AAR+LC +A MR NHPDA Sbjct: 248 QEAVDSLVTYSRKRTQFNEKLYKHQMIKGMIGDAVTQLHAARALCLKAGEMREANHPDAI 307 Query: 312 IHTTAAKYYSSTVANKAAADAIQVLGANGCSRRFPVERLFREAKVLEIIEGTSQLQQQII 371 T+ AKY++S +A +Q+ G +G SR RL+REAKVLEIIEGTSQ+QQQ+I Sbjct: 308 TETSIAKYFTSKIAVDITNTNVQIHGGSGFSRENSASRLYREAKVLEIIEGTSQIQQQVI 367 Query: 372 ALYGANKYY 380 A YG Y+ Sbjct: 368 ANYGLRHYF 376 >A8FAR0.1 A8FAR0_BACP2 Possible acyl-CoA dehydrogenase (NADP(+)) EC=1.3.1.8 Length = 380 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 185/369 (50%), Positives = 265/369 (71%), Gaps = 3/369 (0%) Query: 12 LEEVKQFVEEDIRPFAADFEEQQALPRELIRKMGRKGYLGASFPEEFGGLELDPLEYGSL 71 +E+++Q+ +E IRPFA +F+E + LP LIR M ++GYL A P + GL LDP+ YG Sbjct: 11 VEDIRQYCDEYIRPFANEFDETEHLPESLIRDMAKRGYLAAGIPSSYQGLGLDPIAYGQF 70 Query: 72 VEEIGKGALSAAMLLTVSTGLVGETLIRWGTKYQQQKYVLPIARGEKIGAFALTEPGVGS 131 E++GK + LLTV++ LVGE ++R+GT+ Q+Q +++ +A+GEKIGAFAL+EP +GS Sbjct: 71 TEQVGKACCNVRTLLTVNS-LVGEAILRYGTEEQKQGWLVDLAKGEKIGAFALSEPNIGS 129 Query: 132 GAKDVESAYEKVGDNYRITGRKKWISFGEIADFFIVIAAEPSSKAVSAFLVDRNLEGVKI 191 A VE++Y+K G +Y + G+KKWISFG IADFFIVIA + + V+AFLVDRN GV+I Sbjct: 130 DANHVETSYQKEGQSYVLNGKKKWISFGAIADFFIVIARD--GEQVTAFLVDRNQPGVEI 187 Query: 192 KKMQGLLSCAASQLADIELTGVEVGPEMMVGKEGMGFAGIANFALDYGRFNVAWMGVGLA 251 +++ G+++ AS LA+I L V V ++G G GF + + ALD+GR++VAW G+ +A Sbjct: 188 ERITGMMANRASYLAEITLDHVHVNESSVLGPVGGGFNHVVSLALDHGRYSVAWAGLAIA 247 Query: 252 QEALEVMVTYARKRSQSGQKIFHHQLIKGIIGDNVTNIMAARSLCKEAARMRIENHPDAA 311 QEA++ +VTY+RKR+Q +K++ HQ+IKG+IGD VT + AAR+LC +A MR NHPDA Sbjct: 248 QEAVDSLVTYSRKRTQFNEKLYKHQMIKGMIGDAVTQLHAARALCLKAGEMREANHPDAI 307 Query: 312 IHTTAAKYYSSTVANKAAADAIQVLGANGCSRRFPVERLFREAKVLEIIEGTSQLQQQII 371 T+ AKY++S +A +Q+ G +G SR RL+REAKVLEIIEGTSQ+QQQ+I Sbjct: 308 TETSIAKYFTSKIAVDITNTNVQIHGGSGFSRENSASRLYREAKVLEIIEGTSQIQQQVI 367 Query: 372 ALYGANKYY 380 A YG Y+ Sbjct: 368 ANYGLRHYF 376 >C3AKB3.1 C3AKB3_BACMY Acyl-CoA dehydrogenase (NADP(+)) Length = 354 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 179/349 (51%), Positives = 248/349 (71%), Gaps = 1/349 (0%) Query: 31 EEQQALPRELIRKMGRKGYLGASFPEEFGGLELDPLEYGSLVEEIGKGALSAAMLLTVST 90 + ++ P+ LI+KM +G+L ASFP ++ GLE+DP++YG EEIGK S L+T+ T Sbjct: 2 DNKKVFPKSLIKKMAERGFLSASFPLKYNGLEMDPVQYGLFTEEIGKACCSTRTLITIQT 61 Query: 91 GLVGETLIRWGTKYQQQKYVLPIARGEKIGAFALTEPGVGSGAKDVESAYEKVGDNYRIT 150 L+GE+++R+GTK Q+ ++ I++GEK+GAF L+EP GS AK++++ Y++ + IT Sbjct: 62 SLIGESILRYGTKEQKDYWLTKISKGEKLGAFCLSEPTHGSDAKNIQTRYKREREKIFIT 121 Query: 151 GRKKWISFGEIADFFIVIAAEPSSKAVSAFLVDRNLEGVKIKKMQGLLSCAASQLADIEL 210 G+KKWISF IADFFIV+A + +AF+VDR +G+K+ ++ G+ + A+ +A+IE Sbjct: 122 GKKKWISFAGIADFFIVLAT-SNQGYTTAFIVDRYSKGIKVNEIDGIFASRATHIAEIEF 180 Query: 211 TGVEVGPEMMVGKEGMGFAGIANFALDYGRFNVAWMGVGLAQEALEVMVTYARKRSQSGQ 270 VEV E ++G EG GF I + ALD+GR++VAW GVGLAQEALEVM +YA+ R Q Sbjct: 181 NNVEVPEENILGNEGSGFTFIVSTALDHGRYSVAWGGVGLAQEALEVMTSYAKNRVQFDT 240 Query: 271 KIFHHQLIKGIIGDNVTNIMAARSLCKEAARMRIENHPDAAIHTTAAKYYSSTVANKAAA 330 I +HQL++G+IGD+VT++ AAR+LC +A MR +N DA T AKY+SS VA K A Sbjct: 241 AIHNHQLVQGMIGDSVTSLHAARALCLKAGEMRKKNDIDAINETNFAKYFSSKVAMKIAT 300 Query: 331 DAIQVLGANGCSRRFPVERLFREAKVLEIIEGTSQLQQQIIALYGANKY 379 DA+QVLGANGC +P ERLFREAKVLEIIEGTSQLQQ A Y Y Sbjct: 301 DAVQVLGANGCLNTYPTERLFREAKVLEIIEGTSQLQQLFAANYALYNY 349 >B5UXK5.1 B5UXK5_BACCE Acyl-CoA dehydrogenase domain protein Length = 382 Score = 365 bits (936), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 184/376 (48%), Positives = 261/376 (69%), Gaps = 2/376 (0%) Query: 6 NNSQSILEEVKQFVEEDIRPFAADFEEQQALPRELIRKMGRKGYLGASFPEEFGGLELDP 65 +N++ IL V +F E+ +RP A++FE + LP ++I+++ G LGA+ P+E+GGL LD Sbjct: 2 SNAEEILGVVDEFAEKKLRPRASEFESNEELPYDVIQEISSYGVLGATIPKEYGGLSLDS 61 Query: 66 LEYGSLVEEIGKGALSAAMLLTVSTGLVGETLIRWGTKYQQQKYVLPIARGEKIGAFALT 125 L+YG L E IGK S LLTV LVGE++ RWGT+ Q++K++ +A+G + +FALT Sbjct: 62 LDYGRLTEIIGKACNSVRELLTVHVSLVGESIKRWGTEEQKRKWLPEMAKGNLLFSFALT 121 Query: 126 EPGVGSGAKDVESAYEKVGDNYRITGRKKWISFGEIADFFIVIAAEPSSKAVSAFLVDRN 185 EP VGS AK V ++Y++V D++ + G KKWISF +IAD F+V A+ S VSAF+V+R+ Sbjct: 122 EPEVGSDAKAVGTSYKQVNDHFILNGHKKWISFADIADCFLVFAS--SEGKVSAFIVERS 179 Query: 186 LEGVKIKKMQGLLSCAASQLADIELTGVEVGPEMMVGKEGMGFAGIANFALDYGRFNVAW 245 + GV KM LL+ +S +A+I L V+V E ++G G G++ + N ALD+GR+++AW Sbjct: 180 MTGVSTNKMSKLLASNSSHIAEIHLQDVKVPAENLLGPIGGGWSYVVNTALDHGRYSIAW 239 Query: 246 MGVGLAQEALEVMVTYARKRSQSGQKIFHHQLIKGIIGDNVTNIMAARSLCKEAARMRIE 305 GV +AQEALE MV Y+R+R Q + I ++ I+ I+ + NI AARSLC+EA + R + Sbjct: 240 AGVAIAQEALEAMVAYSRRRKQGNKYICEYEAIQTILAEASVNIKAARSLCQEAGKKRQD 299 Query: 306 NHPDAAIHTTAAKYYSSTVANKAAADAIQVLGANGCSRRFPVERLFREAKVLEIIEGTSQ 365 H DA I TT AKY++S +A K A DA+QV G NG SR +PVERLFREAKVLEIIEGTSQ Sbjct: 300 RHTDAVIETTIAKYFASKMAMKVATDAVQVFGGNGFSREYPVERLFREAKVLEIIEGTSQ 359 Query: 366 LQQQIIALYGANKYYQ 381 + Q IIA + + Q Sbjct: 360 VLQPIIAQHALHTCSQ 375 >C3I383.1 C3I383_BACTU Acyl-CoA dehydrogenase (NADP(+)) Length = 382 Score = 362 bits (928), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 184/376 (48%), Positives = 258/376 (68%), Gaps = 2/376 (0%) Query: 6 NNSQSILEEVKQFVEEDIRPFAADFEEQQALPRELIRKMGRKGYLGASFPEEFGGLELDP 65 +N++ IL V +F E+ +RP A +FE + LP ++I+++ G LGA+ P+E+GGL LD Sbjct: 2 SNAEEILGVVDEFAEKKLRPRAGEFESNEELPYDVIQELSSHGVLGATIPKEYGGLSLDS 61 Query: 66 LEYGSLVEEIGKGALSAAMLLTVSTGLVGETLIRWGTKYQQQKYVLPIARGEKIGAFALT 125 L+YG L E IGK S LLTV LVGE++ RWGT+ Q++K++ +A G + +FALT Sbjct: 62 LDYGRLTEIIGKACNSVRELLTVHVSLVGESIKRWGTEEQKRKWLPEMATGNLLFSFALT 121 Query: 126 EPGVGSGAKDVESAYEKVGDNYRITGRKKWISFGEIADFFIVIAAEPSSKAVSAFLVDRN 185 EP VGS AK V ++Y++V D + + G KKWISF +IAD F+V A+ S VSAF+V+R+ Sbjct: 122 EPEVGSDAKAVGTSYKQVDDYFILNGHKKWISFADIADCFLVFAS--SEGKVSAFIVERS 179 Query: 186 LEGVKIKKMQGLLSCAASQLADIELTGVEVGPEMMVGKEGMGFAGIANFALDYGRFNVAW 245 + GV KM LL+ +S +A+I L V+V E ++G G G++ + N ALD+GR+++AW Sbjct: 180 MTGVSTNKMSKLLASNSSHIAEIHLQDVKVPAENLLGPIGGGWSYVVNTALDHGRYSIAW 239 Query: 246 MGVGLAQEALEVMVTYARKRSQSGQKIFHHQLIKGIIGDNVTNIMAARSLCKEAARMRIE 305 GV +AQEALE MV Y+R+R Q + I ++ I+ I+ + NI AARSLC+EA + R + Sbjct: 240 AGVAIAQEALEAMVAYSRRRKQGNKYICEYEAIQTILAEASVNIKAARSLCQEAGKKRQD 299 Query: 306 NHPDAAIHTTAAKYYSSTVANKAAADAIQVLGANGCSRRFPVERLFREAKVLEIIEGTSQ 365 H DA I TT AKY++S +A K A DA+QV G NG SR +PVERLFREAKVLEIIEGTSQ Sbjct: 300 RHTDAVIETTIAKYFASKMAMKIATDAVQVFGGNGFSREYPVERLFREAKVLEIIEGTSQ 359 Query: 366 LQQQIIALYGANKYYQ 381 + Q IIA + + Q Sbjct: 360 VLQPIIAQHALHTCSQ 375 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,159,262,703 Number of extensions: 87306329 Number of successful extensions: 269970 Number of sequences better than 1.0e-05: 9210 Number of HSP's gapped: 251793 Number of HSP's successfully gapped: 9245 Length of query: 388 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 250 Effective length of database: 1,760,596,133 Effective search space: 440149033250 Effective search space used: 440149033250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)