BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0012.p (279 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0V077.1 C0V077_9BACT Carbohydrate ABC transporter membrane prot... 275 3e-72 B3K641.1 B3K641_9BACI Binding-protein-dependent transport system... 273 1e-71 A4U8U0.1 A4U8U0_9BACT Sugar permease 266 1e-69 B1D781.1 B1D781_9BACL Binding-protein-dependent transport system... 264 5e-69 B1DGI0.1 B1DGI0_9BACL Binding-protein-dependent transport system... 264 8e-69 >C0V077.1 C0V077_9BACT Carbohydrate ABC transporter membrane protein 2, CUT1 family Length = 301 Score = 275 bits (703), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 135/264 (51%), Positives = 197/264 (74%), Gaps = 9/264 (3%) Query: 21 GGSAIVLIPLLWTVSTSLKSPAEVFGTSFFPQSWL-----WSNYADAVKAIPFFLYLRNT 75 G+ ++++P LW +STSLK +VF +P W+ WSNY +A+ +PF LY++NT Sbjct: 42 AGAVVMMLPFLWLISTSLKETWQVFR---YPPQWIPNPVRWSNYPEALTTLPFGLYVKNT 98 Query: 76 IVILVPVMIGTVFTSALSAYGFARFNFRGRKTLFLVLLATMMLPSQVTLIPTFILFKEAG 135 +VI V M+G + +S+L AYGFAR F GR +F+VLL+T+MLP VT+IP++I+FK G Sbjct: 99 LVITVLNMVGILLSSSLCAYGFARLRFPGRDLIFMVLLSTLMLPYAVTMIPSYIIFKYLG 158 Query: 136 LTNSFLPLILPAFFGGGAFNIFLVRQFMRGIPRELDESAVVDGANRWQIFTRIMLPLSKA 195 +++ PLI+P +FGGG FNIFL+RQF R IP EL E+A +DGA+ ++I+ +I+LPL++ Sbjct: 159 WIDTYYPLIVPNWFGGGIFNIFLLRQFFRTIPVELSEAARIDGASEFRIYWQIILPLARP 218 Query: 196 PLIAVSIFTFMGVWNDFQGPLIYLNSNEKYTLALGLSMFKGLYNVEWNMLMAATILIMLP 255 L V+IFTF+ WNDF GPLIYL+S EKYT+ALGL+ FKGLY+ +W LMAA+ +++LP Sbjct: 219 ALTVVAIFTFLNNWNDFIGPLIYLSSPEKYTVALGLATFKGLYSTQWQYLMAASTVMILP 278 Query: 256 ALILFFIAQKYFIEGISISSAVKG 279 + LFF+AQ+YF++GI + + +KG Sbjct: 279 VIALFFLAQRYFVQGI-VLTGLKG 301 >B3K641.1 B3K641_9BACI Binding-protein-dependent transport systems inner membrane component Length = 277 Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 135/257 (52%), Positives = 188/257 (73%), Gaps = 2/257 (0%) Query: 21 GGSAIVLIPLLWTVSTSLKSPAEVFGTS--FFPQSWLWSNYADAVKAIPFFLYLRNTIVI 78 G L+PL+W + +SL + ++F + P+ SNY++A+ +PF Y NT +I Sbjct: 18 AGGIFSLLPLVWLIRSSLMNMGQIFELPPVWIPRPVQLSNYSEALTILPFGQYFMNTAII 77 Query: 79 LVPVMIGTVFTSALSAYGFARFNFRGRKTLFLVLLATMMLPSQVTLIPTFILFKEAGLTN 138 +V ++G + TS++SAY FAR +RGR +F +LL++MMLP VTLIPTFI + + GLTN Sbjct: 78 VVFSVLGVIVTSSISAYSFARMKWRGRNMVFGLLLSSMMLPYAVTLIPTFIGWSKVGLTN 137 Query: 139 SFLPLILPAFFGGGAFNIFLVRQFMRGIPRELDESAVVDGANRWQIFTRIMLPLSKAPLI 198 SF+PLI PA+FGGGAFNIFL+RQF IPR+LDE+A VDGA +IF I+LPL+K LI Sbjct: 138 SFIPLIAPAWFGGGAFNIFLLRQFYLSIPRDLDEAAYVDGAGHLRIFRSIILPLTKPALI 197 Query: 199 AVSIFTFMGVWNDFQGPLIYLNSNEKYTLALGLSMFKGLYNVEWNMLMAATILIMLPALI 258 V +F+F+ WNDF GPL+YLN KYTLALGL FKG+Y+ EW+++MAA +++LPA+I Sbjct: 198 VVGLFSFLTAWNDFLGPLVYLNDETKYTLALGLQQFKGMYSAEWHLMMAAATVVLLPAII 257 Query: 259 LFFIAQKYFIEGISISS 275 +FFI Q+YFIEGI+++ Sbjct: 258 VFFIGQRYFIEGITLTG 274 >A4U8U0.1 A4U8U0_9BACT Sugar permease Length = 288 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 132/260 (50%), Positives = 186/260 (71%), Gaps = 3/260 (1%) Query: 22 GSAIVLIPLLWTVSTSLKSPAEVFG--TSFFPQSWLWSNYADAVKAIPFFLYLRNTIVIL 79 GS ++LIPL W V +S+ S ++F + P W W NY A+ +IPFF Y NT+VIL Sbjct: 30 GSVLMLIPLAWLVRSSVMSLGQIFAFPPEWIPSPWRWENYPQALTSIPFFRYFVNTLVIL 89 Query: 80 VPVMIGTVFTSALSAYGFARFNFRGRKTLFLVLLATMMLPSQVTLIPTFILFKEAGLTNS 139 VP ++GTV TS L+AYGF+R + GR +F +LL T+MLP VTLIPTF+L+ GL + Sbjct: 90 VPSVLGTVITSTLAAYGFSRLQWPGRDIVFGILLTTLMLPYAVTLIPTFLLWASLGLVGT 149 Query: 140 FLPLILPAFFGGGAFNIFLVRQFMRGIPRELDESAVVDGANRWQIFTRIMLPLSKAPLIA 199 + PL++P FFGGG F IFL+RQF +P+ELDE+A++DGA+ Q+ +++PLS+ LI Sbjct: 150 YWPLVVPHFFGGGIFYIFLLRQFFMTLPKELDEAAIIDGASPPQVLWYVIVPLSRPALIT 209 Query: 200 VSIFTFMGVWNDFQGPLIYLNSNEKYTLALGLSMFKGLYNVEWNMLMAATILIMLPALIL 259 V IF + WNDF PLIY+N + ++TLALGL+ F GLY +W++LMAA+ +++LP L+L Sbjct: 210 VVIFATLFEWNDFLEPLIYINRSSQHTLALGLAEFTGLYTSQWHLLMAASTVVILPVLVL 269 Query: 260 FFIAQKYFIEGISISSAVKG 279 FF AQ+YFIEGI++ + KG Sbjct: 270 FFFAQRYFIEGIAL-TGTKG 288 >B1D781.1 B1D781_9BACL Binding-protein-dependent transport systems inner membrane component Length = 276 Score = 264 bits (675), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 120/259 (46%), Positives = 197/259 (76%), Gaps = 3/259 (1%) Query: 23 SAIVLIPLLWTVSTSLKSPAEVF--GTSFFPQSWLWSNYADAVKAIPFFLYLRNTIVILV 80 SA+ ++P LW + +S+ +++F + P+ + + N+ +A+ +PF + +NT++I+ Sbjct: 19 SAMFIVPFLWLLRSSVMDLSQIFIMPPQWIPKPFHFENFKEALTVVPFGTFFKNTLIIVA 78 Query: 81 PVMIGTVFTSALSAYGFARFNFRGRKTLFLVLLATMMLPSQVTLIPTFILFKEAGLTNSF 140 V++GTV +S ++A+GF+R ++GR +F +L+++MMLP VTLIP+FI +KE G ++F Sbjct: 79 GVLLGTVVSSTIAAFGFSRIKWKGRDMVFAILMSSMMLPGAVTLIPSFIGWKELGFYDTF 138 Query: 141 LPLILPAFFGGGAFNIFLVRQFMRGIPRELDESAVVDGANRWQIFTRIMLPLSKAPLIAV 200 PLI+PA+FGGG FNIFL+RQF IP++ DE+A+VDGAN +QI+ RI+LPLS++ +I V Sbjct: 139 YPLIVPAYFGGGMFNIFLLRQFYMSIPQDFDEAALVDGANYFQIYWRILLPLSRSAVIVV 198 Query: 201 SIFTFMGVWNDFQGPLIYLNSNEKYTLALGLSMFKGLYNVEWNMLMAATILIMLPALILF 260 ++FTF+ WNDF GPLIYL S+ ++TLALGL MF+G YN +W++LMAA+ ++LP +++F Sbjct: 199 ALFTFLASWNDFMGPLIYLKSDSRFTLALGLQMFQGSYNAQWDLLMAASTAVVLPCVLVF 258 Query: 261 FIAQKYFIEGISISSAVKG 279 + Q++F+EGI++ + +KG Sbjct: 259 LVGQRFFLEGITL-TGLKG 276 >B1DGI0.1 B1DGI0_9BACL Binding-protein-dependent transport systems inner membrane component Length = 277 Score = 264 bits (674), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 126/261 (48%), Positives = 186/261 (71%), Gaps = 3/261 (1%) Query: 21 GGSAIVLIPLLWTVSTSLKSPAEVFGTS--FFPQSWLWSNYADAVKAIPFFLYLRNTIVI 78 G+ + L P W + +S +++F + P WL SNY +A+ +PF Y NT +I Sbjct: 18 AGTCLCLFPFYWLLRSSFMDQSDIFVIPPIWIPHDWLISNYREAMTILPFNRYFLNTFII 77 Query: 79 LVPVMIGTVFTSALSAYGFARFNFRGRKTLFLVLLATMMLPSQVTLIPTFILFKEAGLTN 138 +V + G V +S++ AY FAR + GR +F+V+L +MMLP VTLIP ++ + + G TN Sbjct: 78 VVLEVSGVVLSSSICAYSFARLRWPGRNLVFMVILTSMMLPGAVTLIPQYVGWAKLGATN 137 Query: 139 SFLPLILPAFFGGGAFNIFLVRQFMRGIPRELDESAVVDGANRWQIFTRIMLPLSKAPLI 198 +F+PL LPA+FGGGAFN+FL+RQF IP+ELDE+A+VDGA ++I++RIMLPL L+ Sbjct: 138 TFIPLTLPAWFGGGAFNVFLLRQFFMTIPKELDEAALVDGAGYFRIYSRIMLPLLVPALV 197 Query: 199 AVSIFTFMGVWNDFQGPLIYLNSNEKYTLALGLSMFKGLYNVEWNMLMAATILIMLPALI 258 V +F+F+ WNDF GPLIYL+ + YTLALGL FKG+YN +W+++MAAT +++LPA++ Sbjct: 198 VVGLFSFLNGWNDFMGPLIYLSDEKLYTLALGLQTFKGMYNAQWHLMMAATTVVLLPAML 257 Query: 259 LFFIAQKYFIEGISISSAVKG 279 +FF+ QKYF+EGI + + +KG Sbjct: 258 VFFLGQKYFVEGI-VMTGLKG 277 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,532,454,967 Number of extensions: 62227350 Number of successful extensions: 232101 Number of sequences better than 1.0e-05: 6382 Number of HSP's gapped: 223256 Number of HSP's successfully gapped: 6384 Length of query: 279 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 145 Effective length of database: 1,798,280,193 Effective search space: 260750627985 Effective search space used: 260750627985 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)