BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0011.p (298 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0V078.1 C0V078_9BACT Carbohydrate ABC transporter membrane prot... 293 1e-77 C0Z9S7.1 C0Z9S7_BREBN Probable ABC transporter permease protein 280 1e-73 B1DGI1.1 B1DGI1_9BACL Binding-protein-dependent transport system... 275 3e-72 C0V0H4.1 C0V0H4_9BACT Carbohydrate ABC transporter membrane prot... 272 3e-71 C0V0J4.1 C0V0J4_9BACT Carbohydrate ABC transporter membrane prot... 271 4e-71 >C0V078.1 C0V078_9BACT Carbohydrate ABC transporter membrane protein 1, CUT1 family Length = 305 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 140/294 (47%), Positives = 205/294 (69%), Gaps = 3/294 (1%) Query: 3 NAKSDRAGYWFILPWLLGLVIFTLGPMIFSLVLSFSKWDVITGVESIQYVGLDNFKAIFH 62 A+ GY FI P +LG +++ GPMIFS +S ++WD+++ + VGL N++ + Sbjct: 15 RAREAIYGYLFIAPAVLGFILWIAGPMIFSAWVSLTQWDMLS---PPKIVGLQNYRQMLE 71 Query: 63 DELFYQSLKVTFIFALVSVPLFQVASILIAVLLNMRSRGMKFFRLIFFMPSVIPAVATSM 122 D LF+QSLKVT F +VSVP+FQV + +A+L+N++ RG+ FR I+++PS++P VA+SM Sbjct: 72 DNLFWQSLKVTMYFTIVSVPIFQVLAFAVALLMNVKVRGITVFRTIYYLPSIVPVVASSM 131 Query: 123 MWVMIFNPEYGILNQALSWFGIQGPAWLQDPSYALGALIVMGLWGIGNTIIIYLSGLQGV 182 +W IFN ++G+LN L G+ WLQDP++A+ ALIVM LWGIG T++IYL+GLQGV Sbjct: 132 LWAWIFNSDFGLLNSLLQAVGLPKVLWLQDPTWAMPALIVMSLWGIGGTMLIYLAGLQGV 191 Query: 183 PEDLYEAGELDGAGPFRRFFSITLPLITPTVFFNLIMGIIGGFQYFTQAFVMTNGGPLNS 242 P LYEA E+DGA +++F +T+P+++P +FFNL++G+IG Q FTQ +++TNGGP NS Sbjct: 192 PAQLYEAAEIDGANKWQQFLHVTVPMMSPVIFFNLVLGLIGALQTFTQGYIITNGGPGNS 251 Query: 243 TLFYNLYLYNKAFMEFDMGYASALSWXXXXXXXXXXXXXXRSSSFWVYYQGDDQ 296 TLFY LYLY +AF F+MGYASA++W R VYY+ + + Sbjct: 252 TLFYVLYLYRQAFTYFNMGYASAMAWVLFVIILALTLLVFRYVGRMVYYEDESR 305 >C0Z9S7.1 C0Z9S7_BREBN Probable ABC transporter permease protein Length = 313 Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 142/288 (49%), Positives = 197/288 (68%), Gaps = 4/288 (1%) Query: 11 YWFILPWLLGLVIFTLGPMIFSLVLSFSKWDVITGVESIQYVGLDNFKAIFHDE-LFYQS 69 Y FILPW+LG + FTLGPM+FSLV+SF W V V + +VGLDN+ +F D+ LF+QS Sbjct: 24 YLFILPWILGFLAFTLGPMLFSLVMSFFDWPV---VGEVTFVGLDNYINMFTDDPLFWQS 80 Query: 70 LKVTFIFALVSVPLFQVASILIAVLLNMRSRGMKFFRLIFFMPSVIPAVATSMMWVMIFN 129 L VT FAL+ VPL ++ +A++LN + +G FFR +F++PSVI VA +M+W +++ Sbjct: 81 LWVTIKFALLFVPLNLFIALFLAMMLNQKVKGSGFFRTVFYLPSVISGVALAMIWAWVYD 140 Query: 130 PEYGILNQALSWFGIQGPAWLQDPSYALGALIVMGLWGIGNTIIIYLSGLQGVPEDLYEA 189 EYGI N LS GI GP WL D S+AL A+++ LWG G+ ++I+L+GL+ +PE LYEA Sbjct: 141 GEYGIFNYLLSLVGITGPDWLNDTSWALVAMVIASLWGQGSMVLIFLAGLKSIPESLYEA 200 Query: 190 GELDGAGPFRRFFSITLPLITPTVFFNLIMGIIGGFQYFTQAFVMTNGGPLNSTLFYNLY 249 +DGAG ++FF ITLP+++PT+ FNLIM II FQ + A ++T GGPL ST FY +Y Sbjct: 201 ASIDGAGAVQKFFRITLPMVSPTILFNLIMTIISAFQQLSLALLLTGGGPLQSTYFYAMY 260 Query: 250 LYNKAFMEFDMGYASALSWXXXXXXXXXXXXXXRSSSFWVYYQGDDQQ 297 Y+ AF F MGYASA SW ++S WVYY+GD+++ Sbjct: 261 AYDNAFKYFKMGYASANSWFMFAIILVLTFLVFKTSGKWVYYEGDNRR 308 >B1DGI1.1 B1DGI1_9BACL Binding-protein-dependent transport systems inner membrane component Length = 301 Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 137/295 (46%), Positives = 202/295 (68%), Gaps = 5/295 (1%) Query: 5 KSDRAGYWFILPWLLGLVIFTLGPMIFSLVLSFSKWDVITGVESIQYVGLDNFKAIFH-- 62 K RAG F P + G +IF LGPMI S + S S+++VIT ++ +G N+ +F Sbjct: 10 KEARAGILFASPVIAGFLIFVLGPMIASFIFSLSEYNVIT---PLKMIGFSNYADLFDGT 66 Query: 63 DELFYQSLKVTFIFALVSVPLFQVASILIAVLLNMRSRGMKFFRLIFFMPSVIPAVATSM 122 D LFY+SL VT + ++SVPL + + ++A+LLN +G FFR +F+MP+++PAVA+SM Sbjct: 67 DPLFYKSLGVTAYYVILSVPLQILLAFMVALLLNHPIKGKAFFRTVFYMPTIVPAVASSM 126 Query: 123 MWVMIFNPEYGILNQALSWFGIQGPAWLQDPSYALGALIVMGLWGIGNTIIIYLSGLQGV 182 +W+ +F+P+ G+LNQ L FGI G W+ + A+ +L++M LW IG T++I+L+GLQG+ Sbjct: 127 IWLWLFDPDLGLLNQLLKVFGIPGLQWIYSENLAVPSLVLMSLWTIGGTMVIFLAGLQGI 186 Query: 183 PEDLYEAGELDGAGPFRRFFSITLPLITPTVFFNLIMGIIGGFQYFTQAFVMTNGGPLNS 242 P+ LYE+ E+DG GP + FSIT+PL+TPT+FFNLIMG IG FQ F QA++MT GGP N+ Sbjct: 187 PKHLYESVEVDGGGPLHKLFSITIPLMTPTIFFNLIMGFIGSFQVFGQAYIMTQGGPNNA 246 Query: 243 TLFYNLYLYNKAFMEFDMGYASALSWXXXXXXXXXXXXXXRSSSFWVYYQGDDQQ 297 TLFY+ YLY +AF MG ASA++W ++S+FWVY + + ++ Sbjct: 247 TLFYSYYLYREAFEFSSMGSASAIAWIMFLVILALTLMVFKTSAFWVYSESEGKR 301 >C0V0H4.1 C0V0H4_9BACT Carbohydrate ABC transporter membrane protein 1, CUT1 family Length = 313 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 129/290 (44%), Positives = 194/290 (66%), Gaps = 3/290 (1%) Query: 5 KSDRAGYWFILPWLLGLVIFTLGPMIFSLVLSFSKWDVITGVESIQYVGLDNFKAIFHDE 64 + + Y FI PWL+G ++F GP++ S ++SF+ W +++ S ++G++N++ + D Sbjct: 24 REELEFYLFISPWLIGFLLFGAGPIVASALISFTDWSLLS---SPHWIGIENYRRLVQDP 80 Query: 65 LFYQSLKVTFIFALVSVPLFQVASILIAVLLNMRSRGMKFFRLIFFMPSVIPAVATSMMW 124 LFY++L T F SV L + S L+A+LLN + GM FR IF++PSV+ +AT+++W Sbjct: 81 LFYKALVNTIYFGAGSVILGVIVSFLLALLLNQKVWGMPLFRTIFYLPSVVAGIATALLW 140 Query: 125 VMIFNPEYGILNQALSWFGIQGPAWLQDPSYALGALIVMGLWGIGNTIIIYLSGLQGVPE 184 V IF+P++G++N L FGIQGP WLQ + + ALI+M +WG GNT++IYL+GLQ +PE Sbjct: 141 VNIFHPDFGMINYVLGLFGIQGPGWLQSEEWVIPALIIMSVWGAGNTMVIYLAGLQNIPE 200 Query: 185 DLYEAGELDGAGPFRRFFSITLPLITPTVFFNLIMGIIGGFQYFTQAFVMTNGGPLNSTL 244 LYEA +DGAG + +F+ +T+P+I+P +FFNL+ G I Q F VMTNGGP +++L Sbjct: 201 HLYEAAAIDGAGAWSKFWHVTVPMISPVIFFNLVTGFIASLQAFVLILVMTNGGPADASL 260 Query: 245 FYNLYLYNKAFMEFDMGYASALSWXXXXXXXXXXXXXXRSSSFWVYYQGD 294 Y LY+Y +AF FDMGYASAL+W + + WVYY+GD Sbjct: 261 VYGLYIYRQAFEYFDMGYASALAWVLFVLIILITALQFKFAQRWVYYEGD 310 >C0V0J4.1 C0V0J4_9BACT Carbohydrate ABC transporter membrane protein 1, CUT1 family Length = 317 Score = 271 bits (694), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 137/285 (48%), Positives = 201/285 (70%), Gaps = 3/285 (1%) Query: 11 YWFILPWLLGLVIFTLGPMIFSLVLSFSKWDVITGVESIQYVGLDNFKAIFHDELFYQSL 70 Y F+ P +LGL++F+LGPMI SL+LSF+++DV++ +++GL N++ + HD+LF+Q+L Sbjct: 35 YIFMAPSVLGLLLFSLGPMIASLLLSFTQYDVVS---PPKWIGLQNYQDLLHDDLFWQAL 91 Query: 71 KVTFIFALVSVPLFQVASILIAVLLNMRSRGMKFFRLIFFMPSVIPAVATSMMWVMIFNP 130 KVT +++ VSVP +L+A+LLN R RG+ F R ++++P+VI VA +M+W +FN Sbjct: 92 KVTSLYSAVSVPATLALGLLLALLLNQRFRGVYFLRTVYYLPTVISGVAVAMLWRWMFNA 151 Query: 131 EYGILNQALSWFGIQGPAWLQDPSYALGALIVMGLWGIGNTIIIYLSGLQGVPEDLYEAG 190 +YGI+N L G+QGP WL +AL ALI+ LWG G T++IYL+GLQG+P +LYEA Sbjct: 152 DYGIINVLLGKVGVQGPQWLLSERWALPALIITSLWGFGGTMLIYLAGLQGIPTELYEAA 211 Query: 191 ELDGAGPFRRFFSITLPLITPTVFFNLIMGIIGGFQYFTQAFVMTNGGPLNSTLFYNLYL 250 E+DGAG + +F +TLPLI+ FFNL++GIIG Q F +A+V+T GGP N+TL ++YL Sbjct: 212 EIDGAGTWGKFRHVTLPLISHVTFFNLVLGIIGSLQVFAEAYVLTGGGPNNATLLLSVYL 271 Query: 251 YNKAFMEFDMGYASALSWXXXXXXXXXXXXXXRSSSFWVYYQGDD 295 YN AF MGYASA++W RSSS WV+Y+ ++ Sbjct: 272 YNNAFQYLKMGYASAIAWVMFVIVLLLTLLVLRSSSRWVFYEVEE 316 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.144 0.460 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,766,599,639 Number of extensions: 74232521 Number of successful extensions: 284411 Number of sequences better than 1.0e-05: 6170 Number of HSP's gapped: 273563 Number of HSP's successfully gapped: 6181 Length of query: 298 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 163 Effective length of database: 1,788,859,178 Effective search space: 291584046014 Effective search space used: 291584046014 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)