BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0010.p (439 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZA79.1 C0ZA79_BREBN Probable ABC transporter substrate binding... 177 2e-42 Q9KBR1.1 Q9KBR1_BACHD BH1864 protein 176 3e-42 C4IHG3.1 C4IHG3_CLOBU ABC transporter, substrate-binding protein 171 1e-40 B1QWC8.1 B1QWC8_CLOBU ABC transporter, substrate-binding protein 171 1e-40 Q3K2T8.1 Q3K2T8_STRA1 Sugar ABC transporter, sugar-binding prote... 170 2e-40 >C0ZA79.1 C0ZA79_BREBN Probable ABC transporter substrate binding protein Length = 426 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 118/344 (34%), Positives = 183/344 (53%), Gaps = 38/344 (11%) Query: 37 TENAGGSKEKVKLTFSIWGDVNTGAVEQQLADEFNAAHPDIEVKFEPIPGDGYGTKLTTS 96 T ++ S EKV LT+++W D N +++A +FN +P++++K E P Y TK+ + Sbjct: 31 TTDSAASGEKVTLTYALW-DKNQMPAMEEMAKKFNEKNPNVDIKIELTPNKQYWTKMEAA 89 Query: 97 LASGTAPDVFLVGEGDFISYVDKGVIEPLDDYIAKDKAFDLNIYQKNLIDMEQIGGKLYY 156 GT PD+F + I Y D ++ P+ D I D DLN Y K L+D+ G+ Y Sbjct: 90 ATGGTLPDIFWINGPRIIKYADNDMLLPITDQIKAD-GIDLNNYPKALVDLYTYDGQNYA 148 Query: 157 LPKDFNPLALWYNKKIFDDAGVAYPSESWTWDDMFAAAQKLTKQENG-------KYTQFG 209 LPKDF+ + LWYNKK+FDDA V YP E+W W+ + A++LT ++ G Y Q G Sbjct: 149 LPKDFDTIGLWYNKKLFDDAKVPYPDETWDWNKLKEVAKQLTDEKKGVWGIAAPPYGQDG 208 Query: 210 FNAGTWEYPIYTYLWANGTDIANEDGTKAEGFMNGEKTVKALEKYVALSTGENRVSPT-P 268 F Y + NG I +ED K G+ E T++ L+ + L + SPT Sbjct: 209 F---------YNTILQNGGYIISED-KKTSGYDKPE-TIEGLKFWTDLIN--EKASPTAA 255 Query: 269 QDTQTMGGDSSMFMTGKLAMMVTGRWIKSDL-------DKSDVEYGSALIPKGADGTRAG 321 Q ++T + +F +GK+AMM G W+ S DK DV Y +PKG + T Sbjct: 256 QLSETEA--TQLFESGKIAMMYNGSWMASAFHKNEYTKDKVDVTY----LPKGKENTS-- 307 Query: 322 IIAAAGWAMNSKTKHKAESYELMKWLSGADAQKLRSKNGLVLPA 365 +I G +++ TKH E++E +K+L + ++ +K+G +PA Sbjct: 308 VIHGLGNVISANTKHPKEAWEFVKFLGSKEGAEILAKSGAAIPA 351 >Q9KBR1.1 Q9KBR1_BACHD BH1864 protein Length = 461 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 121/345 (35%), Positives = 184/345 (53%), Gaps = 20/345 (5%) Query: 46 KVKLTFSIWGDVNTGAVEQQLADEFNAAHPDIEVKFEPIPGDGYGTKLTTSLASGTAPDV 105 V ++ S WG + AV +L D F +P+I+V IP D Y K+ T LA GTAPDV Sbjct: 42 NVHISISTWGLPDELAVFNELVDNFENDNPNIKVNVIHIPDD-YSGKMNTMLAGGTAPDV 100 Query: 106 FLVGEGDFISYVDKGVIEPLDDYIAKDKAFDLNIYQKNLIDMEQIG-----GKLYYLPKD 160 +GDF +V G+ + D + + ++++ L G G LY LPKD Sbjct: 101 VFTSDGDFGGWVKAGLFLNIQDMVEESSINLEDMWESALSRYRWDGRVLGEGDLYALPKD 160 Query: 161 FNPLALWYNKKIFDDAGVAYPSES--WTWDDMFAAAQKLTKQENG--KYTQFGFNAGTWE 216 P AL+YNK++FD+AGV YP TWD++ A+ LT ENG + QFG WE Sbjct: 161 IGPSALFYNKELFDEAGVPYPDPEVPMTWDELLEKAKALTIDENGNGRPDQFGLGPIWWE 220 Query: 217 YPIYTYLWANGTDIANEDGTKAEGFMNGEKTVKALEKYVALSTGENRVSPTPQDTQTMGG 276 ++W+NG DI +ED T MN + V+AL ++VA T ++V+P + + M Sbjct: 221 ----GFIWSNGGDILSEDRTTF--VMNEPEAVEAL-QFVADLTHVHKVAPDSRSLEAMDA 273 Query: 277 DSSMFMTGKLAMMVTGRWIKSDLDKSDVEYGSALIPKGADGTRAGIIAAAGWAMNSKTKH 336 D MF TG++AMM GRW+ K D ++ A P GA G + + G+A+N T Sbjct: 274 DQ-MFETGRIAMMTAGRWMVPTYRKLDFDWDVAPPPAGATGVSSSWSGSVGYAINKDTNF 332 Query: 337 KAESYELMKWLSGADAQKLRSKNGLVLPA--TVAELDQVKATEEK 379 E+++L+++L+G Q+++++ G +P +V+E D EK Sbjct: 333 PEEAFQLIEYLAGERGQEIQTELGFAIPTYKSVSETDVFLQPGEK 377 >C4IHG3.1 C4IHG3_CLOBU ABC transporter, substrate-binding protein Length = 420 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 123/387 (31%), Positives = 209/387 (54%), Gaps = 24/387 (6%) Query: 41 GGSKEKVKLTFSIWGDVNTGAVEQQLADEFNAAHPDIEVKFEPIPGDGYGTKLTTSLASG 100 G K + +T+SIW + + + +AD F +P+I+V E P D Y TKL + + G Sbjct: 27 GSEKSQTTITYSIWDKIQEPGM-RAMADAFEEKNPNIKVNVEVTPWDQYWTKLEAAASGG 85 Query: 101 TAPDVFLVGEGDFISYVDKGVIEPLDDYIAKDKAFDLNIYQKNLIDMEQIGGKLYYLPKD 160 + PDVF + +F Y + L + I D DL+ Y + L+++ + K Y +PKD Sbjct: 86 SLPDVFWMHAKEFTKYAKGNALLDLTEEIKGD--VDLSKYPEGLVELYSLDNKNYAIPKD 143 Query: 161 FNPLALWYNKKIFDDAGVAYPSESWTWDDMFAAAQKLTKQENGKYTQFGFNAGTWEYP-I 219 F+ + LWYNK +FD AG++YP E+WTWD + A++KLT ++ G Y GF A E+ Sbjct: 144 FDTVGLWYNKTLFDQAGISYPDETWTWDTLLEASKKLTNKDAGVY---GFGAVLNEHEGY 200 Query: 220 YTYLWANGTDIANEDGTKAEGFMNGEKTVKALEKYVALSTGENRVSPTPQDTQTMGGDSS 279 Y +++ NG ++ + TK+ M +TV+A++ YV LS E VSP QD ++ Sbjct: 201 YNFIYQNGGEVLTDGKTKSGYHM--PETVEAMQWYVDLSLKE-EVSP-KQDQFAENSPAA 256 Query: 280 MFMTGKLAMMVTGRWIKSDLDKSDVEYGS-----ALIPKGADGTRAGIIAAAGWAMNSKT 334 +F +GK+AM + G W+ ++ + EY S +IPKG A I G ++++KT Sbjct: 257 LFESGKIAMGLFGSWMTAEFASN--EYTSQNCNLTVIPKGKQ--EATIYNGLGNSISAKT 312 Query: 335 KHKAESYELMKWLSGADAQKLRSKNGLVLPATVAELDQ-VKATEEKD-KPVIEMMDFAQ- 391 K+K + + +++L +AQK+++ G + A D + A + + I+M+++ + Sbjct: 313 KNKEAAVKFVEFLGSEEAQKIQADKGSAISAYEGTADTWINAAPNLNLQAYIDMLEYGEI 372 Query: 392 KPVTLRSVNGPVFKEAFTQALEKTLLG 418 KP T V+ +++A L+K G Sbjct: 373 KPYTTE-VDTAKWEKAQNDILKKAFAG 398 >B1QWC8.1 B1QWC8_CLOBU ABC transporter, substrate-binding protein Length = 420 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 123/387 (31%), Positives = 209/387 (54%), Gaps = 24/387 (6%) Query: 41 GGSKEKVKLTFSIWGDVNTGAVEQQLADEFNAAHPDIEVKFEPIPGDGYGTKLTTSLASG 100 G K + +T+SIW + + + +AD F +P+I+V E P D Y TKL + + G Sbjct: 27 GSEKSQTTITYSIWDKIQEPGM-RAMADAFEEKNPNIKVNVEVTPWDQYWTKLEAAASGG 85 Query: 101 TAPDVFLVGEGDFISYVDKGVIEPLDDYIAKDKAFDLNIYQKNLIDMEQIGGKLYYLPKD 160 + PDVF + +F Y + L + I D DL+ Y + L+++ + K Y +PKD Sbjct: 86 SLPDVFWMHAKEFTKYAKGNALLDLTEEIKGD--VDLSKYPEGLVELYSLDNKNYAIPKD 143 Query: 161 FNPLALWYNKKIFDDAGVAYPSESWTWDDMFAAAQKLTKQENGKYTQFGFNAGTWEYP-I 219 F+ + LWYNK +FD AG++YP E+WTWD + A++KLT ++ G Y GF A E+ Sbjct: 144 FDTVGLWYNKTLFDQAGISYPDETWTWDTLLEASKKLTNKDAGVY---GFGAVLNEHEGY 200 Query: 220 YTYLWANGTDIANEDGTKAEGFMNGEKTVKALEKYVALSTGENRVSPTPQDTQTMGGDSS 279 Y +++ NG ++ + TK+ M +TV+A++ YV LS E VSP QD ++ Sbjct: 201 YNFIYQNGGEVLTDGKTKSGYHM--PETVEAMQWYVDLSLKE-EVSP-KQDQFAENSPAA 256 Query: 280 MFMTGKLAMMVTGRWIKSDLDKSDVEYGS-----ALIPKGADGTRAGIIAAAGWAMNSKT 334 +F +GK+AM + G W+ ++ + EY S +IPKG A I G ++++KT Sbjct: 257 LFESGKIAMGLFGSWMTAEFASN--EYTSQNCNLTVIPKGKQ--EATIYNGLGNSISAKT 312 Query: 335 KHKAESYELMKWLSGADAQKLRSKNGLVLPATVAELDQ-VKATEEKD-KPVIEMMDFAQ- 391 K+K + + +++L +AQK+++ G + A D + A + + I+M+++ + Sbjct: 313 KNKEAAVKFVEFLGSEEAQKIQADKGSAISAYEGTADTWINAAPNLNLQAYIDMLEYGEI 372 Query: 392 KPVTLRSVNGPVFKEAFTQALEKTLLG 418 KP T V+ +++A L+K G Sbjct: 373 KPYTTE-VDTAKWEKAQNDILKKAFAG 398 >Q3K2T8.1 Q3K2T8_STRA1 Sugar ABC transporter, sugar-binding protein, putative Length = 425 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 115/362 (31%), Positives = 192/362 (53%), Gaps = 23/362 (6%) Query: 37 TENAGGSKEKVKLTFSIWGDVNTGAVEQQLADEFNAAHPDIEVKFEPIPGDGYGTKLTTS 96 ++N G+ E ++++IW + +++AD+F +P I+VK + + D Y T L Sbjct: 32 SDNKSGTTE---ISYAIWDSAQEPGI-RKIADKFEEKNPKIKVKIQVVSWDAYWTMLEAG 87 Query: 97 LASGTAPDVFLVGEGDFISYVDKGVIEPLDDYIAKDKAFDLNIYQKNLIDMEQIGGKLYY 156 G+ PD F + + Y ++ LDDYI K K L+ Y K L + I G+ Y Sbjct: 88 ATGGSLPDTFWMHSNEIYRYGANKMLLSLDDYIKKSKEVKLSNYPKGLTKIYNIKGEQYA 147 Query: 157 LPKDFNPLALWYNKKIFDDAGVAYPSESWTWDDMFAAAQKLTKQENGKYTQFGFNAGTWE 216 +PKD++ + LWYNKK+FD AGV+YP E+W W+ + AA+KLTK + +Q+GF A Sbjct: 148 IPKDYDTIGLWYNKKMFDAAGVSYPDETWDWNKLKEAAKKLTKPDG---SQYGFLAPLHN 204 Query: 217 YP-IYTYLWANGTDIANEDGTKAEGFMNGEKTVKALEKYVALSTGENRVSPTPQDTQTMG 275 Y +++ NG I +D K G+ + KTV+AL+ Y++ EN +D + Sbjct: 205 QEGYYNFVYQNGGTIITKD--KKSGY-DDPKTVEALKYYLSF-VKENLSPKVTEDKKR-- 258 Query: 276 GDSSMFMTGKLAMMVTGRWIKSDLDKSDV---EYGSALIPKGADGTRAGIIAAAGWAMNS 332 + + G+ AM G W + +D + A++PK DG R+ I G A+++ Sbjct: 259 --AEVMQNGQAAMGYFGSWNLNSFASNDYMKENFDVAVLPKANDGKRSTIFNGLGNAISA 316 Query: 333 KTKHKAESYELMKWLSGADAQKLRSKNGLVLPATVAELDQVKATEEKD---KPVIEMMDF 389 KTKH +++ +++LS +AQ +++K G+ + A D+V K K +EM+D+ Sbjct: 317 KTKHPQAAWKWVEYLSSKEAQDMQAKLGVAISAYKGS-DKVWVDSNKTFAIKHFVEMIDY 375 Query: 390 AQ 391 AQ Sbjct: 376 AQ 377 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.132 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,576,639,530 Number of extensions: 115030478 Number of successful extensions: 202952 Number of sequences better than 1.0e-05: 2410 Number of HSP's gapped: 201115 Number of HSP's successfully gapped: 2419 Length of query: 439 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 300 Effective length of database: 1,751,175,118 Effective search space: 525352535400 Effective search space used: 525352535400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)