BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0008.p (341 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7GLF3.1 B7GLF3_ANOFW Transcriptional regulator, LacI family (HT... 301 5e-80 Q2B538.1 Q2B538_9BACI Transcriptional regulator 293 1e-77 A4ILJ6.1 A4ILJ6_GEOTN Transcriptional regulator 293 1e-77 B4BI45.1 B4BI45_9BACI Transcriptional regulator, LacI family EC=... 293 1e-77 C3J2Z8.1 C3J2Z8_9BACI Transcriptional regulator, LacI family EC=... 293 2e-77 >B7GLF3.1 B7GLF3_ANOFW Transcriptional regulator, LacI family (HTH and periplasmic-binding domains) Length = 343 Score = 301 bits (772), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 142/313 (45%), Positives = 214/313 (68%) Query: 8 SIKDVAKHAGVSISAVSKTLNGYSDVSEATRRKILQAAQELNYSPNMLAKNLKHKVTKTI 67 +IKD+AK AGVS++ VS+ LNGYSDVSE TRRKI+ A++LNYSPN LA++L +KTI Sbjct: 8 TIKDIAKAAGVSVTTVSRALNGYSDVSEKTRRKIMDIAKQLNYSPNTLARSLVMNKSKTI 67 Query: 68 ALIISNFEKANGKDGVVFQIISGVYAAATRYGYEVVIYTRSLSEQQDKSYWQFCNDHKIA 127 L++S ++ KD F++++GV + Y+V+++ + ++Q++K+Y Q C + ++ Sbjct: 68 GLLVSGMTRSAVKDNFTFEVMTGVNDYIAKTDYDVILFNTNSTKQREKTYSQLCRERRVD 127 Query: 128 GVVISGLRTTDPYFEELIDSDIPSVVIDAETIGPHAGSVITDNLEAARLAVQYLISKGHQ 187 GV++ G++T DPY E+++SDIP V+ID G V TDN+ A+ AVQ+L+ GH+ Sbjct: 128 GVILQGIKTDDPYLTEVVESDIPCVLIDIPIQSDRVGYVTTDNVHGAKKAVQHLLELGHR 187 Query: 188 EIGMVNGHRYATVSIKREQGYREALEEAGLTFIPSRVVEADFTEEGAYELTEGFISANPR 247 I M+NGH YA VS +R QG+ EA+EEA + +V DF+EE A + + Sbjct: 188 HIAMMNGHDYAFVSKQRLQGFYEAMEEANVPVQKEWIVNGDFSEEIAEARAYELFAKHQH 247 Query: 248 LTAVFVASDLMAIGVMKRITELGLRVPEDISLMGFDDIVLCSYTTPKLSTIRQDFVGLGY 307 +TA+F ASDLMA+GVMK + +LGLRVPED+S++G+DDI+L SY +P L+T+ Q+ +GY Sbjct: 248 ITAIFCASDLMALGVMKALKQLGLRVPEDVSVVGYDDILLASYVSPALTTVAQNKFQMGY 307 Query: 308 AALEQVVKMLERN 320 A ++ MLE N Sbjct: 308 EAASMLIDMLEGN 320 >Q2B538.1 Q2B538_9BACI Transcriptional regulator Length = 339 Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 143/334 (42%), Positives = 218/334 (65%) Query: 6 MVSIKDVAKHAGVSISAVSKTLNGYSDVSEATRRKILQAAQELNYSPNMLAKNLKHKVTK 65 M +IKD+AK AGVS++ VS+ LNGYSDV+E TR KI+ A+ELNYSPN LA++L +K Sbjct: 1 MTTIKDIAKAAGVSVTTVSRALNGYSDVNEKTREKIMSVAKELNYSPNTLARSLVMNKSK 60 Query: 66 TIALIISNFEKANGKDGVVFQIISGVYAAATRYGYEVVIYTRSLSEQQDKSYWQFCNDHK 125 TI L++S K + KD F+++SGV + Y++V+++ + +Q++K+Y Q C + + Sbjct: 61 TIGLLVSGLNKGSVKDNFTFEVLSGVNDYVSETDYDLVLFSTTSIKQREKTYTQLCRERR 120 Query: 126 IAGVVISGLRTTDPYFEELIDSDIPSVVIDAETIGPHAGSVITDNLEAARLAVQYLISKG 185 + GV++ G+RT DPY +E+++SDIP V+ID AG + TDN A+ A+++LI G Sbjct: 121 VDGVIMQGIRTDDPYLQEVVESDIPCVLIDIPIETDTAGYITTDNKLGAKKAIEHLIRLG 180 Query: 186 HQEIGMVNGHRYATVSIKREQGYREALEEAGLTFIPSRVVEADFTEEGAYELTEGFISAN 245 H+ I M+NGH YA VS +R QG+ EA++ AGL+ +V +F EE A + + Sbjct: 181 HRNIAMINGHEYAFVSQQRLQGFEEAMQGAGLSLNKEWIVNGEFNEEAAESAAVKLLKEH 240 Query: 246 PRLTAVFVASDLMAIGVMKRITELGLRVPEDISLMGFDDIVLCSYTTPKLSTIRQDFVGL 305 ++A+F ASDLMA+GVMK L L+VPE++S++G+DDI+L SY +P L+TI Q+ + Sbjct: 241 HEISAIFCASDLMALGVMKAAKRLNLQVPEELSVVGYDDIMLSSYVSPPLTTIAQNKFLM 300 Query: 306 GYAALEQVVKMLERNTPGYNKILPFSIVDRETIM 339 GY A + ++ LE + L + RET M Sbjct: 301 GYEAAKMLINTLEEKEEPHVVTLDTELKIRETTM 334 >A4ILJ6.1 A4ILJ6_GEOTN Transcriptional regulator Length = 338 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 144/332 (43%), Positives = 218/332 (65%) Query: 6 MVSIKDVAKHAGVSISAVSKTLNGYSDVSEATRRKILQAAQELNYSPNMLAKNLKHKVTK 65 M +IKD+AK AGVSI+ VS+ LNGYSDV+E TR+KI+ A++LNY PN LA+ L +K Sbjct: 1 MTTIKDIAKAAGVSITTVSRALNGYSDVNENTRQKIIDIARQLNYIPNTLARGLVMNKSK 60 Query: 66 TIALIISNFEKANGKDGVVFQIISGVYAAATRYGYEVVIYTRSLSEQQDKSYWQFCNDHK 125 TI L++S K + KD F++++GV + Y++V+++ + ++Q++K+Y Q C + + Sbjct: 61 TIGLLVSGLTKESAKDNFTFEVLAGVNEYVSEVDYDMVLFSTTSTKQREKTYTQLCRERR 120 Query: 126 IAGVVISGLRTTDPYFEELIDSDIPSVVIDAETIGPHAGSVITDNLEAARLAVQYLISKG 185 + G ++ G+RT DPY E+++SDIP V+ID G V TDN+ A+ AV++LI G Sbjct: 121 VDGAILQGIRTDDPYLHEVVESDIPCVLIDIPIESRTVGYVTTDNVLGAKKAVRHLIELG 180 Query: 186 HQEIGMVNGHRYATVSIKREQGYREALEEAGLTFIPSRVVEADFTEEGAYELTEGFISAN 245 H+ I M+NG+ YA VS +R +G++EAL EAGL + F EE A + + Sbjct: 181 HKRIAMINGYEYAFVSEQRLKGFKEALLEAGLPVREYWIANGAFREEIAEQEALRLLQHY 240 Query: 246 PRLTAVFVASDLMAIGVMKRITELGLRVPEDISLMGFDDIVLCSYTTPKLSTIRQDFVGL 305 P +TA F ASDLMA+GV+K + LG RVP+D++++G+DDI+L SY++P LSTI QD + Sbjct: 241 PEITAFFCASDLMALGVIKAVKRLGKRVPDDVAVIGYDDIILASYSSPSLSTIAQDKFAM 300 Query: 306 GYAALEQVVKMLERNTPGYNKILPFSIVDRET 337 GY A + ++ MLE + KIL + RE+ Sbjct: 301 GYEAAKLLIAMLEGKADSHIKILQTELKARES 332 >B4BI45.1 B4BI45_9BACI Transcriptional regulator, LacI family EC=5.1.1.1 Length = 338 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 144/332 (43%), Positives = 218/332 (65%) Query: 6 MVSIKDVAKHAGVSISAVSKTLNGYSDVSEATRRKILQAAQELNYSPNMLAKNLKHKVTK 65 M +IKD+AK AGVSI+ VS+ LNGYSDV+E TR+KI+ A++LNY PN LA+ L +K Sbjct: 1 MTTIKDIAKAAGVSITTVSRALNGYSDVNENTRQKIIDIARQLNYIPNTLARGLVMNKSK 60 Query: 66 TIALIISNFEKANGKDGVVFQIISGVYAAATRYGYEVVIYTRSLSEQQDKSYWQFCNDHK 125 TI L++S K + KD F++++GV + Y++V+++ + ++Q++K+Y Q C + + Sbjct: 61 TIGLLVSGLTKESAKDNFTFEVLAGVNEYVSEVDYDMVLFSTTSTKQREKTYTQLCRERR 120 Query: 126 IAGVVISGLRTTDPYFEELIDSDIPSVVIDAETIGPHAGSVITDNLEAARLAVQYLISKG 185 + G ++ G+RT DPY E+++SDIP V+ID G V TDN+ A+ AV++LI G Sbjct: 121 VDGAILQGIRTDDPYLHEVVESDIPCVLIDIPIESRTVGYVTTDNVLGAKKAVRHLIELG 180 Query: 186 HQEIGMVNGHRYATVSIKREQGYREALEEAGLTFIPSRVVEADFTEEGAYELTEGFISAN 245 H+ I M+NG+ YA VS +R +G++EAL EAGL + F EE A + + Sbjct: 181 HKRIAMINGYEYAFVSEQRLKGFKEALLEAGLPVREYWIANGAFREEIAEQEALRLLQHY 240 Query: 246 PRLTAVFVASDLMAIGVMKRITELGLRVPEDISLMGFDDIVLCSYTTPKLSTIRQDFVGL 305 P +TA F ASDLMA+GV+K + LG RVP+D++++G+DDI+L SY++P LSTI QD + Sbjct: 241 PEITAFFCASDLMALGVIKAVKRLGKRVPDDVAVIGYDDIILASYSSPSLSTIAQDKFAM 300 Query: 306 GYAALEQVVKMLERNTPGYNKILPFSIVDRET 337 GY A + ++ MLE + KIL + RE+ Sbjct: 301 GYEAAKLLIAMLEGKADSHIKILQTELKARES 332 >C3J2Z8.1 C3J2Z8_9BACI Transcriptional regulator, LacI family EC=5.1.1.1 Length = 338 Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 141/323 (43%), Positives = 216/323 (66%) Query: 6 MVSIKDVAKHAGVSISAVSKTLNGYSDVSEATRRKILQAAQELNYSPNMLAKNLKHKVTK 65 M +IKD+AK AGVSI+ VS+ LNGYSDV+E TR+KI+ A++LNYSPN LA+ L +K Sbjct: 1 MTTIKDIAKAAGVSITTVSRALNGYSDVNEKTRQKIMDIAKQLNYSPNTLARGLVMNKSK 60 Query: 66 TIALIISNFEKANGKDGVVFQIISGVYAAATRYGYEVVIYTRSLSEQQDKSYWQFCNDHK 125 TI L++S + + KD F++++GV + Y++V+++ + ++Q++K+Y Q C + + Sbjct: 61 TIGLLVSGLTRESAKDNFTFEVLAGVNEYVSEVDYDMVLFSTTSTKQREKTYTQLCRERR 120 Query: 126 IAGVVISGLRTTDPYFEELIDSDIPSVVIDAETIGPHAGSVITDNLEAARLAVQYLISKG 185 + G ++ G+RT DPY E+++S+IP V+ID G V TDN+ A+ AV++LI G Sbjct: 121 VDGAILQGIRTDDPYLHEVVESEIPCVLIDIPIESKTVGYVTTDNVLGAKKAVRHLIELG 180 Query: 186 HQEIGMVNGHRYATVSIKREQGYREALEEAGLTFIPSRVVEADFTEEGAYELTEGFISAN 245 H+ I M+NG+ YA VS +R +G++EAL EAGL + F EE A + Sbjct: 181 HKRIAMINGYEYAFVSEQRVKGFKEALIEAGLPVREYWIANGAFREEIAEREALRLLQQY 240 Query: 246 PRLTAVFVASDLMAIGVMKRITELGLRVPEDISLMGFDDIVLCSYTTPKLSTIRQDFVGL 305 P +TA F ASDLMA+GV+K + ++G RVP+D++++G+DDI+L SY++P LSTI QD + Sbjct: 241 PEITAFFCASDLMALGVIKAVKQIGKRVPDDVAVIGYDDIILASYSSPALSTIAQDKFAM 300 Query: 306 GYAALEQVVKMLERNTPGYNKIL 328 GY A + ++ MLE N + KIL Sbjct: 301 GYEAAKLLIDMLEGNAQSHVKIL 323 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,858,826,339 Number of extensions: 72690489 Number of successful extensions: 233460 Number of sequences better than 1.0e-05: 9432 Number of HSP's gapped: 218392 Number of HSP's successfully gapped: 9446 Length of query: 341 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 205 Effective length of database: 1,779,438,163 Effective search space: 364784823415 Effective search space used: 364784823415 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)