BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0183.0012.p (275 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I509.1 B8I509_CLOCE Binding-protein-dependent transport system... 218 4e-55 B1DHC1.1 B1DHC1_9BACL Binding-protein-dependent transport system... 218 4e-55 C0CRH1.1 C0CRH1_9FIRM Putative uncharacterized protein 216 2e-54 A5ZA60.1 A5ZA60_9FIRM Putative uncharacterized protein 208 5e-52 A8VR98.1 A8VR98_9BACI ABC-type sugar transport system permease c... 204 8e-51 >B8I509.1 B8I509_CLOCE Binding-protein-dependent transport systems inner membrane component Length = 284 Score = 218 bits (556), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 101/264 (38%), Positives = 158/264 (59%) Query: 10 IYILMIIIAVLQLFPLYWLVISAFKDNSEIIGGTVWALPTEWQLSNFTEAWVSAKVNQYF 69 +YI ++I+AV+QLFPLYW+ + KDNSEI GG LP +W SN++ A V +YF Sbjct: 19 MYIALLIVAVIQLFPLYWMFSFSLKDNSEIFGGNPIGLPGKWLWSNYSNALTQGNVGRYF 78 Query: 70 GNSVIXXXXXXXXXXXXASMMAYALTRMKFKYNSLILFILLMGVMVPIHATLIPLFMILK 129 NSVI A M +YALTRM F+ + ++G+ VP+H+ L+P+F++L+ Sbjct: 79 TNSVIVTTVTILLTSIIAVMASYALTRMVFRIRKPLNSFFILGLTVPLHSALLPIFIMLR 138 Query: 130 NLGXXXXXXXXXXPYIAVNLPIGVYMLSAFLRTMPKELEEAACMDGCGVVKSFFXXXXXX 189 +L PY A +P+ + + S F+ ++P+E+EEAAC+DGC + K FF Sbjct: 139 SLKMVNSYWALIAPYTAFAIPMAILIFSGFMGSIPREMEEAACIDGCSIYKIFFTIILPL 198 Query: 190 XXXXXASVAIFVFLAVWNELLMAATFIQKQELRTLPLGLMNFSGQYSISWGPLAAAMVIS 249 A+V IF FL WNEL+ A FI + +TL +G+ + +GQY+ WGP+ A ++++ Sbjct: 199 MRPAIATVTIFTFLQAWNELMFAVVFISDAKYKTLTVGIQSLAGQYTTEWGPIGAGLMVA 258 Query: 250 TLPILLAYVLFSDQMEKSFTAGAI 273 T+P L+ Y + S +++ S GA+ Sbjct: 259 TIPTLIIYAIMSKKVQDSLVVGAV 282 >B1DHC1.1 B1DHC1_9BACL Binding-protein-dependent transport systems inner membrane component Length = 274 Score = 218 bits (555), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 106/268 (39%), Positives = 161/268 (60%) Query: 6 KNSSIYILMIIIAVLQLFPLYWLVISAFKDNSEIIGGTVWALPTEWQLSNFTEAWVSAKV 65 K ++I+I +I+A QLFPL WLV +F +++ ++ P+ Q N+ AWV K Sbjct: 5 KKTAIWIFFLIVAAGQLFPLIWLVDFSFNSSADFYSDSILKWPSSPQWQNYVNAWVDGKF 64 Query: 66 NQYFGNSVIXXXXXXXXXXXXASMMAYALTRMKFKYNSLILFILLMGVMVPIHATLIPLF 125 +Y NS+ + ++YA RM++K +L+ ILL+G+M+PIHATL+P F Sbjct: 65 LKYLFNSLFISIVTILLTVGLSLTLSYAFIRMQWKLRTLLYTILLLGIMIPIHATLLPNF 124 Query: 126 MILKNLGXXXXXXXXXXPYIAVNLPIGVYMLSAFLRTMPKELEEAACMDGCGVVKSFFXX 185 I K LG PY AV++P+G +MLS FLR++PKELEE+A MDGC + + F Sbjct: 125 AIFKELGLTDSYLGLILPYTAVSVPLGTFMLSGFLRSIPKELEESAVMDGCSIYRIVFQI 184 Query: 186 XXXXXXXXXASVAIFVFLAVWNELLMAATFIQKQELRTLPLGLMNFSGQYSISWGPLAAA 245 +V + FL WNE +MA+TF+ K L+TLP +MNF+GQYS +G A Sbjct: 185 IAPLLKPALVTVVVTTFLNCWNEFIMASTFLSKDALKTLPFSVMNFTGQYSSDYGSQFAV 244 Query: 246 MVISTLPILLAYVLFSDQMEKSFTAGAI 273 MV++++P ++ Y +F++Q+ K TAGA+ Sbjct: 245 MVLTSIPAIIIYAVFNEQITKGVTAGAV 272 >C0CRH1.1 C0CRH1_9FIRM Putative uncharacterized protein Length = 276 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 99/274 (36%), Positives = 165/274 (60%), Gaps = 2/274 (0%) Query: 2 LRKTKNSSI--YILMIIIAVLQLFPLYWLVISAFKDNSEIIGGTVWALPTEWQLSNFTEA 59 +RK K S+ YI +++ V+Q++PL+W+ + K+N+EI G V LP W SN+ EA Sbjct: 1 MRKRKTGSVLTYIFLVLFTVVQIYPLFWMFCFSLKNNNEIFGENVAGLPQHWLWSNYAEA 60 Query: 60 WVSAKVNQYFGNSVIXXXXXXXXXXXXASMMAYALTRMKFKYNSLILFILLMGVMVPIHA 119 W + V +YF N+V+ ++M AYA+TR+K+K++ L + LMG+M+PIH Sbjct: 61 WTNGNVGRYFFNTVVVTFATVVFTVVFSAMAAYAITRLKWKFSRTALTLFLMGLMIPIHC 120 Query: 120 TLIPLFMILKNLGXXXXXXXXXXPYIAVNLPIGVYMLSAFLRTMPKELEEAACMDGCGVV 179 L+PLF+ L PY A LP+ +Y+ + ++ +P+E+EE+A +DGC + Sbjct: 121 ALLPLFLTYVKLNLLNTYFCLILPYTAFALPLAIYVFAGYMEGIPREMEESALLDGCNIY 180 Query: 180 KSFFXXXXXXXXXXXASVAIFVFLAVWNELLMAATFIQKQELRTLPLGLMNFSGQYSISW 239 K F A+V I F+ WNE ++A+ F K ++TL +G+ GQ++ +W Sbjct: 181 KCFLHIILPMLKPVVATVTILTFINTWNEFMLASIFTTKTSMKTLTVGVQEMVGQFTTNW 240 Query: 240 GPLAAAMVISTLPILLAYVLFSDQMEKSFTAGAI 273 GP+ A++V+++LP L+ Y+L S Q++KSF +GA+ Sbjct: 241 GPVGASLVLASLPTLVIYILMSKQVQKSFISGAM 274 >A5ZA60.1 A5ZA60_9FIRM Putative uncharacterized protein Length = 276 Score = 208 bits (529), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 104/261 (39%), Positives = 155/261 (59%) Query: 13 LMIIIAVLQLFPLYWLVISAFKDNSEIIGGTVWALPTEWQLSNFTEAWVSAKVNQYFGNS 72 ++++IA+ QLFPLYWL+ + K N+EI G V LP W+ N+ A S+ + +YF NS Sbjct: 14 VLLLIALTQLFPLYWLITFSLKSNTEIFGENVIGLPKVWRWDNYITALSSSNLIRYFLNS 73 Query: 73 VIXXXXXXXXXXXXASMMAYALTRMKFKYNSLILFILLMGVMVPIHATLIPLFMILKNLG 132 V +SM AYA+ RM +K + + + ++G+M+P A L+PLF IL LG Sbjct: 74 VFYSVVTVVVAGIISSMAAYAIARMTWKLKNAVYGLFMIGIMIPAQAALLPLFQILDKLG 133 Query: 133 XXXXXXXXXXPYIAVNLPIGVYMLSAFLRTMPKELEEAACMDGCGVVKSFFXXXXXXXXX 192 PYIA LP+ + +L F + +P+E+EEAA +DGCG+ K F Sbjct: 134 LKGGYLGLMIPYIAGALPMSIMILVGFYKGIPREMEEAAYIDGCGIFKCFIQIIFPMVKP 193 Query: 193 XXASVAIFVFLAVWNELLMAATFIQKQELRTLPLGLMNFSGQYSISWGPLAAAMVISTLP 252 A+ +IF FL WNEL++A TF+ + RTLP+G+M+ +GQYS WG + A MVI+TLP Sbjct: 194 AIATASIFTFLGTWNELMLANTFVDSDQYRTLPVGIMSLAGQYSTEWGLIGAGMVIATLP 253 Query: 253 ILLAYVLFSDQMEKSFTAGAI 273 ++ Y S Q+++S GA+ Sbjct: 254 TIIIYFFLSKQVQESLVVGAV 274 >A8VR98.1 A8VR98_9BACI ABC-type sugar transport system permease component-like protein Length = 295 Score = 204 bits (518), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 101/270 (37%), Positives = 154/270 (57%) Query: 4 KTKNSSIYILMIIIAVLQLFPLYWLVISAFKDNSEIIGGTVWALPTEWQLSNFTEAWVSA 63 K S +Y+++ +IAV+Q+ PL WLV+ + KDN E+ ALP + N+ W Sbjct: 24 KLLKSILYVILGLIAVVQILPLIWLVLFSLKDNQEVFNLPPLALPQDPNWGNYLRVWTDG 83 Query: 64 KVNQYFGNSVIXXXXXXXXXXXXASMMAYALTRMKFKYNSLILFILLMGVMVPIHATLIP 123 + YF NS+I AS + +A+TRM +K N ++L + ++G+M+P+H+TLIP Sbjct: 84 NIGLYFFNSIIVTGSAVILTILLASFVTFAITRMNWKLNKIVLALFMIGLMIPVHSTLIP 143 Query: 124 LFMILKNLGXXXXXXXXXXPYIAVNLPIGVYMLSAFLRTMPKELEEAACMDGCGVVKSFF 183 LF N+G Y A NLP+ + +L F T+P+ELEEAA +DGC + + FF Sbjct: 144 LFSFFLNIGLMNTHPAIILTYTAFNLPLTIMILLGFYYTIPRELEEAAIVDGCSIHRMFF 203 Query: 184 XXXXXXXXXXXASVAIFVFLAVWNELLMAATFIQKQELRTLPLGLMNFSGQYSISWGPLA 243 A+ AI + WNE + TFI L+TL +G+ NF GQYS WG + Sbjct: 204 QIILPLTAPVVATTAIINMIYNWNEFVFVNTFISSDSLKTLTVGIQNFIGQYSTDWGAIG 263 Query: 244 AAMVISTLPILLAYVLFSDQMEKSFTAGAI 273 A +VIS LP+L+A+V S+++ + TAG++ Sbjct: 264 ATLVISVLPLLIAFVFLSNRIVEGITAGSV 293 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.139 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,288,734,270 Number of extensions: 41901769 Number of successful extensions: 146311 Number of sequences better than 1.0e-05: 5717 Number of HSP's gapped: 136426 Number of HSP's successfully gapped: 5717 Length of query: 275 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 141 Effective length of database: 1,798,280,193 Effective search space: 253557507213 Effective search space used: 253557507213 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)