BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0183.0011.p (295 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A5ZA59.1 A5ZA59_9FIRM Putative uncharacterized protein 253 1e-65 A6TTC9.1 A6TTC9_ALKMQ Binding-protein-dependent transport system... 238 4e-61 B8I508.1 B8I508_CLOCE Binding-protein-dependent transport system... 237 1e-60 B3KA22.1 B3KA22_9BACI Binding-protein-dependent transport system... 233 2e-59 Q2BFH7.1 Q2BFH7_9BACI Sugar ABC transporter permease 229 2e-58 >A5ZA59.1 A5ZA59_9FIRM Putative uncharacterized protein Length = 294 Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 122/291 (41%), Positives = 193/291 (66%), Gaps = 3/291 (1%) Query: 2 MEKALSNKKIIALFLLPGLTVFLIFYFVPIVMTAYYSLQDWDGINPMTFIGLDNYTKMFT 61 MEK L NKK I +F+LP L +FL F +P++ + YS +++GI TFIG+ NY ++FT Sbjct: 1 MEKMLGNKKYILIFILPALLLFLGFTLIPLITSGVYSFFEYNGIGSKTFIGIKNYIELFT 60 Query: 62 VDKSFWQAVWNSLAFLLVGVFIQLPVSFALALLVSRKMKGRKWFRNIYFFPVVMSTTMVS 121 D+ F QAV NSL + +FIQLP+S LAL++S+ +KG +FR IYF PVV+S+ ++ Sbjct: 61 SDRYFPQAVKNSLILVAASLFIQLPISLILALILSKGVKGDNFFRTIYFIPVVISSMVIG 120 Query: 122 LLWVKIYDPNIGMLNTLMDXXXXXXXXXXXXXDTKTALLSVLIVTTWHYVGYNMLILFAG 181 LW+K+++ + G++NT++ TK A ++VLI + W Y+GY+M+I +AG Sbjct: 121 QLWLKMFNSDYGVINTVIRYFVPEYEHSWL---TKNAFMTVLIPSVWQYIGYHMIIFYAG 177 Query: 182 MQGIPEQYYEAAKLDGATGWKAVRHITFPLLSDVLRICIVLNVIYALKTFESVYVMTNGG 241 ++ I YYEAA++DGA+ W+ R IT PLL V++ C++ + +L+ F+ VYVMT GG Sbjct: 178 IKSISTDYYEAAQIDGASTWQVYRKITLPLLVPVIKTCVIFAITGSLRAFDLVYVMTGGG 237 Query: 242 PLNSTTVIALKMFQEAFLKQNFGYGSALAVFMVLECLVISWVLNKILTQEK 292 P + + V A M+ F K +GYGSA A F+V+ECL+ ++++N++ + + Sbjct: 238 PNHISEVPATLMYNNLFRKGLYGYGSAQAFFIVIECLIFTFIVNRLFKKAE 288 >A6TTC9.1 A6TTC9_ALKMQ Binding-protein-dependent transport systems inner membrane component Length = 292 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 121/297 (40%), Positives = 191/297 (64%), Gaps = 8/297 (2%) Query: 2 MEKALSNKKIIALFLLPGLTVFLIFYFVPIVMTAYYSLQDWDGINPMTFIGLDNYTKMFT 61 M+K +S+KKIIAL++LP L V + + PIVMT YY L WDGI M FIGL NYT++ + Sbjct: 1 MDKVMSDKKIIALYVLPALVVIMTLVYSPIVMTGYYGLMKWDGIGKMEFIGLANYTRLLS 60 Query: 62 VDKSFWQAVWNSLAFLLVGVF--IQLPVSFALALLVSRKMKGRKWFRNIYFFPVVMSTTM 119 D FWQ+ ++S L+ VF I L ++L+++ K+KG R IY P+++S+ Sbjct: 61 -DSMFWQSAYHSF---LLAVFSVISLGGYLLISLILAGKIKGANLLRKIYLIPMLLSSVA 116 Query: 120 VSLLWVKIYDPNIGMLNTLMDXXXXXXXXXXXXXDTKTALLSVLIVTTWHYVGYNMLILF 179 ++ LW++IY P G++N+++ D L S+ I W Y G+ +LI + Sbjct: 117 IAQLWLRIYHPTNGVINSVLTSLGTENIPLWLA-DPDIVLYSIFIAIIWQYAGFYILIYY 175 Query: 180 AGMQGIPEQYYEAAKLDGATGWKAVRHITFPLLSDVLRICIVLNVIYALKTFESVYVMTN 239 A ++ IPE EAA++DGAT W+ I PL+++V+++ IVL V+ +LK F+ +YVMTN Sbjct: 176 AALKNIPESLIEAARIDGATPWQIAYKIKIPLIANVIKVTIVLAVVGSLKYFDLIYVMTN 235 Query: 240 GGPLNSTTVIALKMFQEAFLKQNFGYGSALAVFMVLECLVISWVLNKI-LTQEKIEY 295 GGP ++ V+A M+++AF +FGYGSA+ F++L CLV++WV+ K+ ++E+I+Y Sbjct: 236 GGPNGASEVMASYMYKQAFRTYDFGYGSAIGFFLLLICLVVTWVIRKLTASEEEIQY 292 >B8I508.1 B8I508_CLOCE Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 123/293 (41%), Positives = 177/293 (60%), Gaps = 2/293 (0%) Query: 2 MEKALSNKKIIALFLLPGLTVFLIFYFVPIVMTAYYSLQDWDGINPMTFIGLDNYTKMFT 61 ++K L NKK I FL P L +F+ VPI+M+ YYSLQ+W G TFIGL NY + + Sbjct: 2 VDKVLGNKKAIVFFLFPALVIFIGLIIVPIIMSTYYSLQEWSGFGKGTFIGLQNYKGLLS 61 Query: 62 VDKSFWQAVWNSLAFLLVGVFIQLPVSFALALLVSRKMKGRKWFRNIYFFPVVMSTTMVS 121 D F +A NSL VFIQLP+S LAL +++ +K K F IYF PV++ST ++ Sbjct: 62 -DPIFIKAAVNSLILAFASVFIQLPISLLLALTLAKGVKFEKSFVTIYFIPVIISTVVIG 120 Query: 122 LLWVKIYDPNIGMLNTLMDXXXXXXXXXXXXXDTKTALLSVLIVTTWHYVGYNMLILFAG 181 LW+KIY+P+ G+LN + D K AL + I W Y+GY+ML+++AG Sbjct: 121 QLWMKIYNPDYGILNLFLKNIGLGSLASEWLGDPKRALTATFIPIIWQYIGYHMLLMYAG 180 Query: 182 MQGIPEQYYEAAKLDGATGWKAVRHITFPLLSDVLRICIVLNVIYALKTFESVYVMTNGG 241 ++ I +EAA +DG++ W IT P+L VL + ++ V ALK F+ VYV+T GG Sbjct: 181 IKSISTDVFEAAVIDGSSWWNTSMKITIPMLKPVLNVSVIFAVTGALKVFDLVYVLTGGG 240 Query: 242 PLNSTTVIALKMFQEAFLKQNFGYGSALAVFMVLECLVISWVLNKILTQEKIE 294 P +++ VI M F +GYGSA+A+F++LEC V+S +L +L +EK E Sbjct: 241 PAHASEVIGTYMVSTIFKGNQYGYGSAMAIFVILECFVLS-ILVGLLFREKGE 292 >B3KA22.1 B3KA22_9BACI Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 116/297 (39%), Positives = 191/297 (64%), Gaps = 8/297 (2%) Query: 2 MEKALSNKKIIALFLLPGLTVFLIFYFVPIVMTAYYSLQDWDGINPMTFIGLDNYTKMFT 61 M+K +SNKKIIAL++LP L V + ++PI++TAYY L +W+GI MTFIGLDNY + + Sbjct: 1 MDKVMSNKKIIALYVLPALLVIMAVVYIPIILTAYYGLNEWNGIGAMTFIGLDNYQALLS 60 Query: 62 VDKSFWQAVWNSLAFLLVGVF--IQLPVSFALALLVSRKMKGRKWFRNIYFFPVVMSTTM 119 D FW + W+SL L+ VF L + A+A++++ K+KG FR IY P+++S+ Sbjct: 61 -DGKFWDSAWHSL---LLAVFSAASLMIYLAVAMVLASKIKGANLFRKIYLIPMLLSSVA 116 Query: 120 VSLLWVKIYDPNIGMLNTLMDXXXXXXXXXXXXXDTKTALLSVLIVTTWHYVGYNMLILF 179 ++ LW++IY P G++N+ ++ + L ++ I W Y G+ +LI + Sbjct: 117 IAQLWLRIYHPTNGIVNSFLESIGITNPPAWLA-EPSLVLFALFIPILWQYAGFYILIYY 175 Query: 180 AGMQGIPEQYYEAAKLDGATGWKAVRHITFPLLSDVLRICIVLNVIYALKTFESVYVMTN 239 A ++ IP EAAK+DGAT ++ I PL+ +V+++ IVL V+ +LK F+ ++VMT+ Sbjct: 176 AALKNIPASLVEAAKIDGATSFQIAFRIKLPLIMEVIKVTIVLAVVGSLKYFDLIFVMTD 235 Query: 240 GGPLNSTTVIALKMFQEAFLKQNFGYGSALAVFMVLECLVISWVLNKI-LTQEKIEY 295 GGP ++ V+A M+ AF +FGYGSA+ F+++ CL+++WV+ K+ ++E I+Y Sbjct: 236 GGPNGASEVMASYMYHTAFRAYDFGYGSAIGFFLLVICLIVTWVIRKLTASKETIQY 292 >Q2BFH7.1 Q2BFH7_9BACI Sugar ABC transporter permease Length = 291 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 115/292 (39%), Positives = 186/292 (63%), Gaps = 1/292 (0%) Query: 2 MEKALSNKKIIALFLLPGLTVFLIFYFVPIVMTAYYSLQDWDGINPMTFIGLDNYTKMFT 61 M+ K IA L P L ++L+F +PI+ + YYSL +W+G + M F+GLDN+ ++F Sbjct: 1 MQPTKGTKIAIAAGLAPALLIYLVFAILPILQSFYYSLMEWNGFSAMKFVGLDNFVQLFQ 60 Query: 62 VDKSFWQAVWNSLAFLLVGVFIQLPVSFALALLVSRKMKGRKWFRNIYFFPVVMSTTMVS 121 D FW +V N++ +L VF Q+P++ +ALL++RK+KG K FR I F PVV+ST ++S Sbjct: 61 -DSLFWNSVKNNIYVVLASVFGQVPIALFIALLLNRKIKGLKIFRTIGFLPVVLSTVVIS 119 Query: 122 LLWVKIYDPNIGMLNTLMDXXXXXXXXXXXXXDTKTALLSVLIVTTWHYVGYNMLILFAG 181 L W I++ G++N L+ DTK ++++VL+V W +VG ++I A Sbjct: 120 LTWSLIFNSEQGLINELLRAVGLDFLAQNWLGDTKFSMIAVLVVVIWQFVGLYLIIFLAA 179 Query: 182 MQGIPEQYYEAAKLDGATGWKAVRHITFPLLSDVLRICIVLNVIYALKTFESVYVMTNGG 241 +Q +P++ EAAK+DGA+ W IT P++ D + + ++L + +LKTF+ +YVMT+GG Sbjct: 180 LQNVPQEVLEAAKIDGASEWTTTWKITIPMIWDTIIVAVILAISGSLKTFDLIYVMTHGG 239 Query: 242 PLNSTTVIALKMFQEAFLKQNFGYGSALAVFMVLECLVISWVLNKILTQEKI 293 P +ST V+AL MF E F K +GYGSA++V + L++ + + K+L ++ I Sbjct: 240 PAHSTDVMALYMFNETFSKLQYGYGSAVSVVIFFFSLILIYTVTKLLGRKMI 291 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.141 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,581,372,444 Number of extensions: 58506381 Number of successful extensions: 228072 Number of sequences better than 1.0e-05: 6074 Number of HSP's gapped: 217745 Number of HSP's successfully gapped: 6125 Length of query: 295 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 161 Effective length of database: 1,798,280,193 Effective search space: 289523111073 Effective search space used: 289523111073 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)