BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0183.0009.p (284 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8FWU4.1 B8FWU4_DESHD Two component transcriptional regulator, A... 165 3e-39 Q24NA7.1 Q24NA7_DESHY Putative uncharacterized protein 165 4e-39 A6M388.1 A6M388_CLOB8 Response regulator receiver protein 163 2e-38 A8RM75.1 A8RM75_9CLOT Putative uncharacterized protein 157 8e-37 A3CMX5.1 A3CMX5_STRSV Two-component response transcriptional reg... 157 1e-36 >B8FWU4.1 B8FWU4_DESHD Two component transcriptional regulator, AraC family Length = 265 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 104/283 (36%), Positives = 151/283 (53%), Gaps = 21/283 (7%) Query: 1 MRTTAPAARVLIVDDEYYFRQLLIHLIDWTSAGFEVVAEAEDGSEALRIMEEQRIDLIIT 60 MR ++LIVDDE RQ + LI++ V EAEDG+ AL I++E+R D+++ Sbjct: 1 MRVQKTMYKLLIVDDEPIIRQGIKQLINFQEQSISEVYEAEDGALALDIVKEKRPDIVLA 60 Query: 61 DIEMPNMNGLDFVKAVRALDSAAKLIFITSYDNFTYAQQAISLGADHYLLKPVDEEAVEQ 120 DI MPN++GL+ + ++A+D ++ IT YD F YA A+ G D YLLKPV + + Sbjct: 61 DINMPNLDGLNLAREIKAVDPEIRVAVITGYDYFEYAVTALKAGVDDYLLKPVSRSDILE 120 Query: 121 ALNTIRAQLQEKWEEERYINRLRIEAGYGGQPASDQTSEDGGRPGSGKRLIHKAAAYVTA 180 L+ + L+EK E+ R ++ L AS + E GG G + V Sbjct: 121 LLSKLVNDLKEKTEQRRAMDSL----------ASLKQLEHGG--NEGHHHYREMILQVMN 168 Query: 181 HYAED-TLSLQSTASALFVNPSYLSHVFKKETNESFVEYVTNIRLGKAMELLRQGAATED 239 H D SL A A+ ++ YLS VFK+ F EY+T +RL ++ LL Sbjct: 169 HSLSDPAFSLGRLAEAINLSSGYLSTVFKQNFGIPFQEYLTTMRLERSKILLL------- 221 Query: 240 ASVPKVATIAHQVGYRDPFYFSKCFKKKYGITPNKVYGGTYSG 282 + K+ IA +VG+ DP YFS CFKK+YG++PN Y T G Sbjct: 222 VTSYKIYEIAEKVGFDDPSYFSTCFKKRYGLSPNS-YRDTMGG 263 >Q24NA7.1 Q24NA7_DESHY Putative uncharacterized protein Length = 265 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 104/283 (36%), Positives = 150/283 (53%), Gaps = 21/283 (7%) Query: 1 MRTTAPAARVLIVDDEYYFRQLLIHLIDWTSAGFEVVAEAEDGSEALRIMEEQRIDLIIT 60 MR ++LIVDDE RQ + LI++ V EAEDG+ AL I+ E+R D+++ Sbjct: 1 MRVQKTMYKLLIVDDEPIIRQGIKQLINFQEQSISEVYEAEDGALALAIVREKRPDIVLA 60 Query: 61 DIEMPNMNGLDFVKAVRALDSAAKLIFITSYDNFTYAQQAISLGADHYLLKPVDEEAVEQ 120 DI MPN++GL+ + ++A+D ++ IT YD F YA A+ G D YLLKPV + + Sbjct: 61 DINMPNLDGLNLAREIKAVDPEIRVAIITGYDYFEYAVTALKAGVDDYLLKPVSRSDILE 120 Query: 121 ALNTIRAQLQEKWEEERYINRLRIEAGYGGQPASDQTSEDGGRPGSGKRLIHKAAAYVTA 180 L+ + L+EK E+ R ++ L AS + E GG G + V Sbjct: 121 LLSKLVNDLKEKTEQRRAMDSL----------ASLKQLEHGG--NEGHHHYREMILQVMN 168 Query: 181 HYAED-TLSLQSTASALFVNPSYLSHVFKKETNESFVEYVTNIRLGKAMELLRQGAATED 239 H D SL A A+ ++ YLS VFK+ F EY+T +RL ++ LL Sbjct: 169 HSLSDPAFSLGRLAEAINLSSGYLSTVFKQNFGIPFQEYLTTMRLERSKILLL------- 221 Query: 240 ASVPKVATIAHQVGYRDPFYFSKCFKKKYGITPNKVYGGTYSG 282 + K+ IA +VG+ DP YFS CFKK+YG++PN Y T G Sbjct: 222 VTSYKIYEIAEKVGFDDPSYFSTCFKKRYGLSPNS-YRDTMGG 263 >A6M388.1 A6M388_CLOB8 Response regulator receiver protein Length = 267 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 84/264 (31%), Positives = 152/264 (57%), Gaps = 12/264 (4%) Query: 9 RVLIVDDEYYFRQLLIHLIDWTSAGFEVVAEAEDGSEALRIMEEQRIDLIITDIEMPNMN 68 +V+I+DDE+ R L+ + IDW G E+VAEA + E L ++ +++ D+I+TDI MP + Sbjct: 6 KVMIIDDEHLIRDLIKNCIDWNEIGMEIVAEASNAVEGLNLINKEKPDIILTDINMPVTD 65 Query: 69 GLDFVKAVRALDSAAKLIFITSYDNFTYAQQAISLGADHYLLKPVDEEAVEQALNTIRAQ 128 GLD K++ K+I IT Y+ F YA+++I +G + ++LKP+DE+ + ++ ++ + Sbjct: 66 GLDMSKSILERYPDIKVIVITGYNEFEYAKRSIKIGVNDFILKPIDEDELRNSVLKLKDE 125 Query: 129 LQEKW-EEERYINRLRIEAGYGGQPASDQTSEDGGRPGSGKRLIHKAAAYVTAHYAEDTL 187 +Q+++ +++ Y + Y + +E + S I + ++ + + L Sbjct: 126 IQDEYLKKKEYKDIKEKMVVYNNIINLNDANETEDKNLS----IEQIKKFIVKNISNRDL 181 Query: 188 SLQSTASALFVNPSYLSHVFKKETNESFVEYVTNIRLGKAMELLRQGAATEDASVPKVAT 247 SL+ A +VNPSYLS +FK++T+E+F EY+ N ++ E+L+ A K Sbjct: 182 SLKLVAEYFYVNPSYLSRIFKEKTDETFSEYIVNTKVKIVTEMLKNPNA-------KAYE 234 Query: 248 IAHQVGYRDPFYFSKCFKKKYGIT 271 I+ ++G DP YFS FKK G++ Sbjct: 235 ISKKIGIDDPNYFSNWFKKCTGLS 258 >A8RM75.1 A8RM75_9CLOT Putative uncharacterized protein Length = 253 Score = 157 bits (398), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 94/266 (35%), Positives = 149/266 (56%), Gaps = 21/266 (7%) Query: 9 RVLIVDDEYYFRQLLIHLIDWTSAGFEVVAEAEDGSEALRIMEEQRIDLIITDIEMPNMN 68 +V++V+DE R+ +I IDW + + EA +G E + D+I+TD++MP M+ Sbjct: 3 KVIVVEDETMVRRGIILTIDWAALDCVIAGEAANGEEGAELAVRLSPDIIVTDVKMPRMD 62 Query: 69 GLDFVKAVRALDSAAKLIFITSYDNFTYAQQAISLGADHYLLKPVDEEAVEQALNTIRAQ 128 G++ + +R AK I +T+Y +F YAQ A+ LG YLLKP+ + +EQA+ IR Q Sbjct: 63 GVEMITKLREQGCRAKFIILTAYSDFKYAQSALRLGVSDYLLKPLRDGDLEQAVRHIREQ 122 Query: 129 LQEKWEEERYINRLRIEAGYGGQPASDQTSEDGGRPGSGKRLIHKAAAYVTAHYAEDTLS 188 ++E+ +E +A + SD+ S++ + + A Y+ HY ED ++ Sbjct: 123 MEERPAKEE-----ETDAAPVLRFHSDKKSKN--------KYVEAATRYIREHYRED-IT 168 Query: 189 LQSTASALFVNPSYLSHVFKKETNESFVEYVTNIRLGKAMELLRQGAATEDASVPKVATI 248 + + AS L ++ YLS VFKKET+ +F Y+ R+ AM LL+ D V KV + Sbjct: 169 ISTVASFLEISEGYLSRVFKKETDYTFTNYLAYYRMQMAMNLLK------DCRV-KVYEV 221 Query: 249 AHQVGYRDPFYFSKCFKKKYGITPNK 274 A QVGY D YFS FKK G++P++ Sbjct: 222 ADQVGYSDTAYFSAQFKKILGVSPSE 247 >A3CMX5.1 A3CMX5_STRSV Two-component response transcriptional regulator (CheY-like receiver and AraC-type DNA-binding domains), putative Length = 244 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 100/269 (37%), Positives = 144/269 (53%), Gaps = 31/269 (11%) Query: 10 VLIVDDEYYFRQLLIHLIDWTSAGFEVVAEAEDGSEALRIMEEQRIDLIITDIEMPNMNG 69 ++IV+DEY RQ + L+D+ G +V+A+AE+G EA + +E D+++TDI MP MNG Sbjct: 4 IIIVEDEYLVRQGIASLVDYEQFGMQVIAQAENGIEAWQKFQENPADILLTDINMPQMNG 63 Query: 70 LDFVKAVRALDSAAKLIFITSYDNFTYAQQAISLGADHYLLKPVDEEAVEQALNTIRAQL 129 L+ K VR ++F+T YD+F YA+ AI LGAD YLLKP ++ VE+ L A++ Sbjct: 64 LELAKLVRDQAPKCHIVFLTGYDDFDYARTAIKLGADDYLLKPFSKDDVEEML----AKV 119 Query: 130 QEKWEEERYINRLRIEAGYGGQPASDQTSEDGGRPGSGKRLIHKAAAYVTAHYAEDTLSL 189 Q K ++ER + A Q D G + IH A A+ LSL Sbjct: 120 QTKLDKER-------------KKAQIQNLVDQGHHSELEEAIH-------ARLADSELSL 159 Query: 190 QSTASALFVNPSYLSHVFKKETNESFVEYVTNIRLGKAMELLRQGAATEDASVPKVATIA 249 +S A L +PSYLS + KKE F +Y+ R+ KA + K+ IA Sbjct: 160 KSLAFQLGFSPSYLSVLIKKELGLPFQDYLIQERMKKA-------KLLLLTTDLKIYEIA 212 Query: 250 HQVGYRDPFYFSKCFKKKYGITPNKVYGG 278 QVG+ D YFS+ FK+ G+TP + G Sbjct: 213 EQVGFEDMNYFSQRFKQVVGLTPRQFKKG 241 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,663,398,476 Number of extensions: 66752411 Number of successful extensions: 295509 Number of sequences better than 1.0e-05: 19604 Number of HSP's gapped: 306157 Number of HSP's successfully gapped: 20120 Length of query: 284 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 150 Effective length of database: 1,798,280,193 Effective search space: 269742028950 Effective search space used: 269742028950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)