BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0183.0006.p (188 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAE8.1 B3KAE8_9BACI Putative uncharacterized protein 309 9e-83 C0Z606.1 C0Z606_BREBN Putative uncharacterized protein 295 1e-78 B1DB03.1 B1DB03_9BACL Putative uncharacterized protein 288 1e-76 A3DFL9.1 A3DFL9_CLOTH Putative uncharacterized protein 63 1e-08 B4BA50.1 B4BA50_CLOTM Putative uncharacterized protein 63 1e-08 >B3KAE8.1 B3KAE8_9BACI Putative uncharacterized protein Length = 188 Score = 309 bits (791), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 146/186 (78%), Positives = 169/186 (90%) Query: 1 MSWSKLKQQLEGFLSPALNGRVEYRAPGYRYLPDKSGICYISVDKKNVLNMSDKTNAIIW 60 MSWSKLKQQLE FLSPAL GRVEYRA GYRYLPDK+G+CYISVDKKNVL+MSDKTN+I W Sbjct: 1 MSWSKLKQQLESFLSPALAGRVEYRATGYRYLPDKAGLCYISVDKKNVLHMSDKTNSIRW 60 Query: 61 YQTELEIKNDPDIQIPITSDDIEAVRQATKGPVPEDRLIVMARSRKSTEHAKELMSAQAA 120 YQTELEIKNDP IQIPI+ D++EAVR+ TKG VPEDRL V+AR+RK + AKEL+SAQAA Sbjct: 61 YQTELEIKNDPHIQIPISDDELEAVRKETKGTVPEDRLNVIARNRKISVLAKELLSAQAA 120 Query: 121 LTKSNFIVVANKFLTTPIEESLESKDMVLNILALVDRRVGKKRILSMSEMMKLKHPIVQF 180 L+KSNF+ ANKFL+T IEES+ES D++LNILALVDRRVGKKRI++M++ MKLKHPIVQ+ Sbjct: 121 LSKSNFVATANKFLSTSIEESMESDDILLNILALVDRRVGKKRIVNMADRMKLKHPIVQY 180 Query: 181 FYELRR 186 FYELRR Sbjct: 181 FYELRR 186 >C0Z606.1 C0Z606_BREBN Putative uncharacterized protein Length = 189 Score = 295 bits (755), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 138/185 (74%), Positives = 165/185 (89%) Query: 1 MSWSKLKQQLEGFLSPALNGRVEYRAPGYRYLPDKSGICYISVDKKNVLNMSDKTNAIIW 60 MSWSKLK+QLE FL PAL+GRVEY A YRYLPDK+GICYI+VDKKN+LNM D T+ I W Sbjct: 1 MSWSKLKKQLESFLCPALDGRVEYSATAYRYLPDKAGICYIAVDKKNILNMKDITSTIKW 60 Query: 61 YQTELEIKNDPDIQIPITSDDIEAVRQATKGPVPEDRLIVMARSRKSTEHAKELMSAQAA 120 YQTE EIKND +IQIPI +++EAVR+ TKG VPEDRL V+AR+RK +E+AKEL+SAQ++ Sbjct: 61 YQTEQEIKNDSEIQIPINDEEMEAVRKDTKGTVPEDRLKVIARNRKISEYAKELLSAQSS 120 Query: 121 LTKSNFIVVANKFLTTPIEESLESKDMVLNILALVDRRVGKKRILSMSEMMKLKHPIVQF 180 L+KSNFIVVAN+FL+T IEES+ES D++LNILALVDRR+GKKRIL+MSE MKLKHPIVQ+ Sbjct: 121 LSKSNFIVVANQFLSTSIEESIESNDILLNILALVDRRIGKKRILNMSEKMKLKHPIVQY 180 Query: 181 FYELR 185 FYELR Sbjct: 181 FYELR 185 >B1DB03.1 B1DB03_9BACL Putative uncharacterized protein Length = 189 Score = 288 bits (738), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 137/185 (74%), Positives = 160/185 (86%) Query: 1 MSWSKLKQQLEGFLSPALNGRVEYRAPGYRYLPDKSGICYISVDKKNVLNMSDKTNAIIW 60 MSWSK+KQQLE FLSPAL GRVEYR+ YRYLPDK+G+CYI+VDKKNV NMSD T +I W Sbjct: 1 MSWSKMKQQLESFLSPALLGRVEYRSTSYRYLPDKAGLCYIAVDKKNVFNMSDATTSIRW 60 Query: 61 YQTELEIKNDPDIQIPITSDDIEAVRQATKGPVPEDRLIVMARSRKSTEHAKELMSAQAA 120 YQTE EIKNDP +QIPI+ D+IEAVR TKG VPEDRL V+AR RK E AKEL+SAQ + Sbjct: 61 YQTEQEIKNDPQLQIPISKDEIEAVRTDTKGLVPEDRLKVIARGRKIGELAKELLSAQTS 120 Query: 121 LTKSNFIVVANKFLTTPIEESLESKDMVLNILALVDRRVGKKRILSMSEMMKLKHPIVQF 180 L+KSNF+V+ANKFL+ IEES+ES D++LNILALVDRRVGKKRI +MSE +KLKHPIVQ+ Sbjct: 121 LSKSNFVVIANKFLSLSIEESMESNDILLNILALVDRRVGKKRIQNMSEKIKLKHPIVQY 180 Query: 181 FYELR 185 F+ELR Sbjct: 181 FHELR 185 >A3DFL9.1 A3DFL9_CLOTH Putative uncharacterized protein Length = 180 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 95/187 (50%), Gaps = 20/187 (10%) Query: 2 SWSKLKQQLE-GFLSPALNGRVEYRAPGYRYLPDKSGICYISVDKKNVLNMSDKTNAIIW 60 SWS ++++LE L AL GR++Y Y D+SG I VD + ++ + + + Sbjct: 4 SWSGVRKRLEQDLLCDALKGRLKYFITKYNNAHDESGRVAIIVDGREII----QGDIFRY 59 Query: 61 YQT--ELEIKNDPDIQIPITSDDIEAVRQATKGPVPEDRLIVMARSRKSTEHAKELMSAQ 118 Y+ E+E K ++ IP ++ G R++ +R++ E+ ++ + Sbjct: 60 YKGYREVEKKIKSELGIP---------KRFWDGK----RIVNDEVNREAEEYIDKIRLNE 106 Query: 119 AALTKSNFIVVANKFLTTPIEESLESKDMVLNILALVDRRVGKKRILSMSEMMKLKHPIV 178 F +FL + I+ESL S++ ++ +LA+VDRRVGK+ + + + + + + Sbjct: 107 GIFDVWQFTDAVERFLNSNIKESLVSENPLVRLLAIVDRRVGKRTLEKLKDTVLQQPEWL 166 Query: 179 QFFYELR 185 Q+FY LR Sbjct: 167 QYFYRLR 173 >B4BA50.1 B4BA50_CLOTM Putative uncharacterized protein Length = 180 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 95/187 (50%), Gaps = 20/187 (10%) Query: 2 SWSKLKQQLE-GFLSPALNGRVEYRAPGYRYLPDKSGICYISVDKKNVLNMSDKTNAIIW 60 SWS ++++LE L AL GR++Y Y D+SG I VD + ++ + + + Sbjct: 4 SWSGVRKRLEQDLLCDALKGRLKYFITKYNNAHDESGRVAIIVDGREII----QGDIFRY 59 Query: 61 YQT--ELEIKNDPDIQIPITSDDIEAVRQATKGPVPEDRLIVMARSRKSTEHAKELMSAQ 118 Y+ E+E K ++ IP ++ G R++ +R++ E+ ++ + Sbjct: 60 YKGYREVEKKIKSELGIP---------KRFWDGK----RIVNDEVNREAEEYIDKIRLNE 106 Query: 119 AALTKSNFIVVANKFLTTPIEESLESKDMVLNILALVDRRVGKKRILSMSEMMKLKHPIV 178 F +FL + I+ESL S++ ++ +LA+VDRRVGK+ + + + + + + Sbjct: 107 GIFDVWQFTDAVERFLNSNIKESLVSENPLVRLLAIVDRRVGKRTLEKLKDTVLQQPEWL 166 Query: 179 QFFYELR 185 Q+FY LR Sbjct: 167 QYFYRLR 173 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,030,985,361 Number of extensions: 37655754 Number of successful extensions: 96333 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 96332 Number of HSP's successfully gapped: 5 Length of query: 188 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 60 Effective length of database: 1,854,806,283 Effective search space: 111288376980 Effective search space used: 111288376980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)