BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0181.0005.p (290 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DAG7.1 B1DAG7_9BACL Binding-protein-dependent transport system... 472 e-131 Q5WK38.1 Q5WK38_BACSK Polysaccharide ABC transporter permease 369 e-100 B3K543.1 B3K543_9BACI Binding-protein-dependent transport system... 364 6e-99 B1DHI1.1 B1DHI1_9BACL Binding-protein-dependent transport system... 363 9e-99 A4IP81.1 A4IP81_GEOTN Integral membrane protein 359 2e-97 >B1DAG7.1 B1DAG7_9BACL Binding-protein-dependent transport systems inner membrane component Length = 290 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 220/290 (75%), Positives = 260/290 (89%) Query: 1 MYHKTVSYRVFSVFNNVFLTLISVLCLLPLFHLLMVSLSSTAPANAGLVTFWPIGFTLEA 60 MYHKT+ YRVF FNNV L +I +LCLLP++HLLMVSLSS+A AN GLVTFWP GFT EA Sbjct: 1 MYHKTIPYRVFRAFNNVILLVIGILCLLPMYHLLMVSLSSSAAANGGLVTFWPKGFTFEA 60 Query: 61 YAKTFDNANFLSSLWVSVQRTVLGTALALVVNTIAAYALSKETHVFRARNIYLWYFVITM 120 YAKTFDN NFL++LWV+++RT+LGTAL L VN IAAYALSK+T VFRARNIYLWYFVITM Sbjct: 61 YAKTFDNKNFLTALWVAIERTLLGTALGLFVNAIAAYALSKDTRVFRARNIYLWYFVITM 120 Query: 121 LFSGGLIPGYILILKLGLMDSLLALILPGLVGVFNIILLLNFFRTVPKDLEEAAFIDGAG 180 LFSGGLIP YILILKL L+++L+AL+LPGLV +N+ILLLNFFRTVPK+LEEAAF+DG+G Sbjct: 121 LFSGGLIPSYILILKLHLINNLMALVLPGLVAAYNMILLLNFFRTVPKELEEAAFMDGSG 180 Query: 181 QFRTFYSIYLPVSMPVLATVSLFIMVGHWNAYFDGIIYIKDASKLPLATFMQTIIVQADM 240 R+F+SIYLP+S+P LATV LF MVGHWNAYFDG+IY+KDA+KLPLA+FMQT+IVQ+DM Sbjct: 181 HLRSFFSIYLPISLPSLATVGLFTMVGHWNAYFDGLIYMKDAAKLPLASFMQTLIVQSDM 240 Query: 241 TKLDPAAVANLSQRTIRASQIFISALPILLVYPFLQRYFVTGIVVGAVKE 290 T D A+AN+SQRT+RASQIFI ALPIL+VYPFLQR+FV G+V+GAVKE Sbjct: 241 TSFDATAIANMSQRTLRASQIFIGALPILIVYPFLQRFFVKGVVIGAVKE 290 >Q5WK38.1 Q5WK38_BACSK Polysaccharide ABC transporter permease Length = 312 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 177/293 (60%), Positives = 234/293 (79%), Gaps = 3/293 (1%) Query: 1 MYHKTVSYRVFSVFNNVFLTLISVLCLLPLFHLLMVSLSSTAPANAGLVTFWPIGFTLEA 60 M++++ +YR+FSVFN VFL ++S +C++PL H+L VS S+ APANA LV FWP+ FT+ A Sbjct: 20 MHYRSRTYRIFSVFNIVFLLVLSAICIMPLIHILAVSFSAPAPANANLVRFWPVDFTVSA 79 Query: 61 YAKTFDNANFLSSLWVSVQRTVLGTALALVVNTIAAYALSKETHVFRARNIYLWYFVITM 120 + +TF N NFL +LW V RTVLGT ++LV T+AAYALSKE F+ R +Y++ V M Sbjct: 80 WEQTFGNQNFLRALWNGVFRTVLGTIISLVTITLAAYALSKEDREFKGRKMYMYALVFVM 139 Query: 121 LFSGGLIPGYILILKLGLMDSLLALILPGLVGVFNIILLLNFFRT-VPKDLEEAAFIDGA 179 LF+GGLIP YIL+ LGL++++ AL+LPG V VFN+ILLLNFFRT VPK LEEAAFIDGA Sbjct: 140 LFNGGLIPTYILVQNLGLINTIWALVLPGAVNVFNLILLLNFFRTGVPKSLEEAAFIDGA 199 Query: 180 GQFRTFYSIYLPVSMPVLATVSLFIMVGHWNAYFDGIIYIKDASKLPLATFMQTIIVQAD 239 G F+ + IYLP+S+P LATV LF MVG WN++FDG+IY+ D++K PL+TF+QTIIVQ D Sbjct: 200 GHFQILFKIYLPISLPALATVGLFTMVGQWNSWFDGLIYLTDSTKYPLSTFLQTIIVQND 259 Query: 240 MTKL--DPAAVANLSQRTIRASQIFISALPILLVYPFLQRYFVTGIVVGAVKE 290 ++L +P V LS+RT+R++QIFI ALPI++VYPFLQ+YFV GIV+G+VKE Sbjct: 260 FSQLNVNPDEVKALSERTVRSAQIFIGALPIIIVYPFLQKYFVKGIVLGSVKE 312 >B3K543.1 B3K543_9BACI Binding-protein-dependent transport systems inner membrane component Length = 292 Score = 364 bits (934), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 167/292 (57%), Positives = 226/292 (77%), Gaps = 2/292 (0%) Query: 1 MYHKTVSYRVFSVFNNVFLTLISVLCLLPLFHLLMVSLSSTAPANAGLVTFWPIGFTLEA 60 MYHKT+ YR+F+VFN L +++LC++PL H+L +S SS A A+A LV WP+ F+LEA Sbjct: 1 MYHKTMEYRIFNVFNTCLLVALAILCIIPLLHVLAISFSSKAAADASLVGLWPVDFSLEA 60 Query: 61 YAKTFDNANFLSSLWVSVQRTVLGTALALVVNTIAAYALSKETHVFRARNIYLWYFVITM 120 Y KT +N FL S+W+S+ RTVLGTAL L V +AAY LSKE VFR+R++Y W FV +M Sbjct: 61 YKKTINNPAFLHSIWISIARTVLGTALTLAVTFLAAYPLSKENRVFRSRSVYSWLFVFSM 120 Query: 121 LFSGGLIPGYILILKLGLMDSLLALILPGLVGVFNIILLLNFFRTVPKDLEEAAFIDGAG 180 +F+GGL+P YI+I KLGL++S L++PG V F +IL+LNFFR +PK+LEEAAFIDGAG Sbjct: 121 VFNGGLVPFYIVIQKLGLINSFWVLVIPGTVNTFLVILMLNFFRGIPKELEEAAFIDGAG 180 Query: 181 QFRTFYSIYLPVSMPVLATVSLFIMVGHWNAYFDGIIYIKDASKLPLATFMQTIIVQADM 240 F+T + IYLP+S+P +AT++LF MV HWN++FDG++Y+ +A PLATF+QT+I+Q DM Sbjct: 181 HFKTLFKIYLPISLPSIATIALFSMVFHWNSWFDGLLYLNNAKDFPLATFLQTVIIQRDM 240 Query: 241 T--KLDPAAVANLSQRTIRASQIFISALPILLVYPFLQRYFVTGIVVGAVKE 290 + + P + LSQ T+ A+QIFI A PILLVYPFLQR+FV G+ +G+VKE Sbjct: 241 SSMSMSPKEMELLSQTTVNAAQIFIGAAPILLVYPFLQRFFVKGMTLGSVKE 292 >B1DHI1.1 B1DHI1_9BACL Binding-protein-dependent transport systems inner membrane component Length = 292 Score = 363 bits (932), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 179/292 (61%), Positives = 234/292 (80%), Gaps = 2/292 (0%) Query: 1 MYHKTVSYRVFSVFNNVFLTLISVLCLLPLFHLLMVSLSSTAPANAGLVTFWPIGFTLEA 60 MYHKT+ Y++FS+ N VFL L+S+LC+LP+ H+L VS SS APA++ LV FWPIGFT +A Sbjct: 1 MYHKTLGYKIFSIGNYVFLGLLSLLCILPIIHILAVSFSSMAPASSNLVGFWPIGFTTDA 60 Query: 61 YAKTFDNANFLSSLWVSVQRTVLGTALALVVNTIAAYALSKETHVFRARNIYLWYFVITM 120 Y KTF N+NFL+SL VSV RTVL T + + + + AY LSKE FR R +Y+W FV T+ Sbjct: 61 YEKTFGNSNFLNSLGVSVMRTVLSTVIGMALCLMTAYPLSKEDLHFRGRTMYVWIFVFTI 120 Query: 121 LFSGGLIPGYILILKLGLMDSLLALILPGLVGVFNIILLLNFFRTVPKDLEEAAFIDGAG 180 LFSGGLIP YIL+ K+GLMDS+ AL+LPG V V+N+IL+LNFFR +PK+LEEAA++DGAG Sbjct: 121 LFSGGLIPSYILVQKIGLMDSIWALVLPGAVSVWNVILMLNFFRGLPKELEEAAYLDGAG 180 Query: 181 QFRTFYSIYLPVSMPVLATVSLFIMVGHWNAYFDGIIYIKDASKLPLATFMQTIIVQADM 240 Q +T +++P+SMP +AT+SLF MV WN++FDG+IY++D PLA+ +QTIIVQ D Sbjct: 181 QLKTLVLVFIPLSMPSIATLSLFTMVYQWNSWFDGMIYMRDIKDYPLASLLQTIIVQQDF 240 Query: 241 TKL--DPAAVANLSQRTIRASQIFISALPILLVYPFLQRYFVTGIVVGAVKE 290 +K+ DP + N+SQRT+RA+QIFI ALPILLVYPFLQR+FV G+V+GAVKE Sbjct: 241 SKINVDPKQLENISQRTVRAAQIFIGALPILLVYPFLQRFFVKGMVIGAVKE 292 >A4IP81.1 A4IP81_GEOTN Integral membrane protein Length = 296 Score = 359 bits (921), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 171/292 (58%), Positives = 221/292 (75%), Gaps = 3/292 (1%) Query: 2 YHKTVSYRVFSVFNNVFLTLISVLCLLPLFHLLMVSLSSTAPANAGLVTFWPIGFTLEAY 61 Y K++SY++F++FN FLT+ ++LC+LPL H+L VS S +A A A LV WP+ FTL+AY Sbjct: 5 YQKSLSYKIFTIFNYTFLTVAALLCILPLIHILAVSFSGSAAATANLVGLWPVDFTLDAY 64 Query: 62 AKTFDNANFLSSLWVSVQRTVLGTALALVVNTIAAYALSKETHVFRARNIYLWYFVITML 121 KT N NFL SLW S R VLGTA+++ V AAY LSK FR R IY+W+FV TML Sbjct: 65 EKTIGNENFLRSLWNSFLRVVLGTAISMAVMLCAAYPLSKSDKAFRGRKIYMWFFVFTML 124 Query: 122 FSGGLIPGYILILKLGLMDSLLALILPGLVGVFNIILLLNFFRT-VPKDLEEAAFIDGAG 180 F GGL+P Y+++ KLGL D++ ALILP V FN+ILL+NFFRT VPK LEEAA +DGA Sbjct: 125 FHGGLVPTYMVVTKLGLTDTIWALILPSAVSAFNLILLINFFRTSVPKSLEEAALMDGAN 184 Query: 181 QFRTFYSIYLPVSMPVLATVSLFIMVGHWNAYFDGIIYIKDASKLPLATFMQTIIVQADM 240 F F+ IYLP+S+P +AT+SLF MV HWN++FDGIIY+ D PL+TF+QTIIVQ D Sbjct: 185 HFTIFWKIYLPISVPAIATISLFTMVFHWNSWFDGIIYMSDVKHYPLSTFLQTIIVQQDF 244 Query: 241 TKL--DPAAVANLSQRTIRASQIFISALPILLVYPFLQRYFVTGIVVGAVKE 290 TK+ D + NLS+RT++A+QIFI+ALP+L VYPF+Q++FV GIV+GA KE Sbjct: 245 TKMSVDAETLQNLSERTVKAAQIFIAALPMLAVYPFVQKFFVKGIVLGAEKE 296 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.143 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,556,522,119 Number of extensions: 60922069 Number of successful extensions: 265649 Number of sequences better than 1.0e-05: 6179 Number of HSP's gapped: 256922 Number of HSP's successfully gapped: 6180 Length of query: 290 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 156 Effective length of database: 1,798,280,193 Effective search space: 280531710108 Effective search space used: 280531710108 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)