BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0026.p (277 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D6P9.1 B1D6P9_9BACL NLPA lipoprotein 379 e-103 A6LR33.1 A6LR33_CLOB8 NLPA lipoprotein 328 4e-88 B9DZW6.1 B9DZW6_CLOK1 Putative uncharacterized protein 323 1e-86 A5N6E6.1 A5N6E6_CLOK5 Predicted ABC transporter, substrate-bindi... 323 1e-86 B0KA25.1 B0KA25_THEP3 Lipoprotein, YaeC family 241 4e-62 >B1D6P9.1 B1D6P9_9BACL NLPA lipoprotein Length = 296 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 184/238 (77%), Positives = 207/238 (86%) Query: 40 ITLKVGAAPVPHAEILEFIKPKLKEEGINLEVVTLDDEGQLNPALQEKQIDANYFQHVPY 99 +TLKVGAA VPHAEILEFIKPKLKEEGINLE+ LDDEGQLNPALQEKQIDANYFQHVPY Sbjct: 59 VTLKVGAAAVPHAEILEFIKPKLKEEGINLEIEVLDDEGQLNPALQEKQIDANYFQHVPY 118 Query: 100 LDSIQGEKGYDFAVTAKVHVEPIGFYSEKLKSKEELPDGAKIGIPNNPSNEYRAXXXXXX 159 L+S++ EKGYDF VT KVHVEPIGFYS KLKSK+E+ +GAKIGIPNNPSNEYRA Sbjct: 119 LNSVKDEKGYDFVVTTKVHVEPIGFYSSKLKSKDEIKEGAKIGIPNNPSNEYRALVLLQQ 178 Query: 160 XXXXXXXXXXATYEATPKDIAENPHKFEFVEADAATLPRALPDLDGAVINTNVVLESGID 219 TYEATPKDI +NP K +F+EAD+ATLPR+LPDLDGA+INTN+VLE+ ID Sbjct: 179 QGLIKLKDGLTTYEATPKDIIDNPKKLKFIEADSATLPRSLPDLDGAIINTNLVLEAKID 238 Query: 220 PKSALFREDANSPYANVVVVRSGDENREEIKKLDEALTSPDVKTFIEDKYGVAVVPAF 277 P+SALFREDANSPYANV+VVRSGDENR+EIKKL+ ALT+P+VK FIE+KYGVAVVPAF Sbjct: 239 PQSALFREDANSPYANVIVVRSGDENRDEIKKLNAALTTPEVKKFIEEKYGVAVVPAF 296 >A6LR33.1 A6LR33_CLOB8 NLPA lipoprotein Length = 281 Score = 328 bits (840), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 160/238 (67%), Positives = 183/238 (76%) Query: 40 ITLKVGAAPVPHAEILEFIKPKLKEEGINLEVVTLDDEGQLNPALQEKQIDANYFQHVPY 99 +TLKVGAA PHAEILE IKPKLKE+GINLE+VTLDDEGQLNPAL EKQIDANYFQHVPY Sbjct: 44 VTLKVGAALTPHAEILEHIKPKLKEQGINLEIVTLDDEGQLNPALDEKQIDANYFQHVPY 103 Query: 100 LDSIQGEKGYDFAVTAKVHVEPIGFYSEKLKSKEELPDGAKIGIPNNPSNEYRAXXXXXX 159 L+S+ EKGYDF V K+HVEPIG YS KLKS +L DG KIGIPNNPSNEYRA Sbjct: 104 LESVSKEKGYDFEVAGKIHVEPIGLYSNKLKSINDLQDGDKIGIPNNPSNEYRALVLLEK 163 Query: 160 XXXXXXXXXXATYEATPKDIAENPHKFEFVEADAATLPRALPDLDGAVINTNVVLESGID 219 Y ATP DIAENP +FVEAD A LPR+L DL GAVINTN++L++ ID Sbjct: 164 NGLIKLKSGLENYSATPNDIAENPKHLQFVEADVAQLPRSLGDLAGAVINTNIILDAKID 223 Query: 220 PKSALFREDANSPYANVVVVRSGDENREEIKKLDEALTSPDVKTFIEDKYGVAVVPAF 277 P +A+ RED +SPYANV+ VR GD++R+EIK L LT+ DVK FI++KYG AVVPAF Sbjct: 224 PNTAILREDGDSPYANVITVRKGDKDRKEIKALISVLTTDDVKNFIKEKYGSAVVPAF 281 >B9DZW6.1 B9DZW6_CLOK1 Putative uncharacterized protein Length = 274 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 157/238 (65%), Positives = 185/238 (77%) Query: 40 ITLKVGAAPVPHAEILEFIKPKLKEEGINLEVVTLDDEGQLNPALQEKQIDANYFQHVPY 99 + +K+GAA VPHAEIL IKP L +EGI+L+VV LD E +LNPALQEKQIDANYFQHVPY Sbjct: 37 VVVKIGAAAVPHAEILNHIKPALAKEGIDLQVVVLDSEDELNPALQEKQIDANYFQHVPY 96 Query: 100 LDSIQGEKGYDFAVTAKVHVEPIGFYSEKLKSKEELPDGAKIGIPNNPSNEYRAXXXXXX 159 L+S+ EKGY+FAV KVHVEPIGFYS+K+KSK+EL +GAKI IPNNPSNEYRA Sbjct: 97 LESVAKEKGYNFAVAGKVHVEPIGFYSDKIKSKDELKEGAKIAIPNNPSNEYRALALLEA 156 Query: 160 XXXXXXXXXXATYEATPKDIAENPHKFEFVEADAATLPRALPDLDGAVINTNVVLESGID 219 + Y ATP DIA+NP EFVE DAA LPR LPD+DG++INTN+VLE+ +D Sbjct: 157 EKLIKLKSGISNYNATPSDIADNPKNLEFVEVDAAQLPRVLPDVDGSIINTNLVLEAKMD 216 Query: 220 PKSALFREDANSPYANVVVVRSGDENREEIKKLDEALTSPDVKTFIEDKYGVAVVPAF 277 P ALFRE +NSPYANV+VVR GDEN++EIK + L S DVK FI+ KYGVAVVPAF Sbjct: 217 PNKALFREGSNSPYANVIVVRKGDENKKEIKAIVAKLNSEDVKNFIKSKYGVAVVPAF 274 >A5N6E6.1 A5N6E6_CLOK5 Predicted ABC transporter, substrate-binding lipoprotein Length = 274 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 157/238 (65%), Positives = 185/238 (77%) Query: 40 ITLKVGAAPVPHAEILEFIKPKLKEEGINLEVVTLDDEGQLNPALQEKQIDANYFQHVPY 99 + +K+GAA VPHAEIL IKP L +EGI+L+VV LD E +LNPALQEKQIDANYFQHVPY Sbjct: 37 VVVKIGAAAVPHAEILNHIKPALAKEGIDLQVVVLDSEDELNPALQEKQIDANYFQHVPY 96 Query: 100 LDSIQGEKGYDFAVTAKVHVEPIGFYSEKLKSKEELPDGAKIGIPNNPSNEYRAXXXXXX 159 L+S+ EKGY+FAV KVHVEPIGFYS+K+KSK+EL +GAKI IPNNPSNEYRA Sbjct: 97 LESVAKEKGYNFAVAGKVHVEPIGFYSDKIKSKDELKEGAKIAIPNNPSNEYRALALLEA 156 Query: 160 XXXXXXXXXXATYEATPKDIAENPHKFEFVEADAATLPRALPDLDGAVINTNVVLESGID 219 + Y ATP DIA+NP EFVE DAA LPR LPD+DG++INTN+VLE+ +D Sbjct: 157 EKLIKLKSGISNYNATPSDIADNPKNLEFVEVDAAQLPRVLPDVDGSIINTNLVLEAKMD 216 Query: 220 PKSALFREDANSPYANVVVVRSGDENREEIKKLDEALTSPDVKTFIEDKYGVAVVPAF 277 P ALFRE +NSPYANV+VVR GDEN++EIK + L S DVK FI+ KYGVAVVPAF Sbjct: 217 PNKALFREGSNSPYANVIVVRKGDENKKEIKAIVAKLNSEDVKNFIKSKYGVAVVPAF 274 >B0KA25.1 B0KA25_THEP3 Lipoprotein, YaeC family Length = 278 Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 130/238 (54%), Positives = 159/238 (66%), Gaps = 2/238 (0%) Query: 41 TLKVGAAPVPHAEILEFIKPKLKEEGINLEVVTLDDEGQLNPALQEKQIDANYFQHVPYL 100 T+KVGA PVPHA+IL +KP L++EGI LE+V D Q N L EK++DANYFQH+PYL Sbjct: 42 TIKVGATPVPHAQILNVVKPLLEKEGITLEIVEFTDYVQPNLKLAEKELDANYFQHIPYL 101 Query: 101 DSIQGEKGYDFAVTAKVHVEPIGFYSEKLKSKEELPDGAKIGIPNNPSNEYRAXXXXXXX 160 + E D AKVH+EP+G YS+K+K+ EL +GA I IPN+ +N RA Sbjct: 102 EDFSKEHNLDLTYIAKVHIEPMGIYSQKIKNLSELKEGATIAIPNDATNGGRA-LLLLQS 160 Query: 161 XXXXXXXXXATYEATPKDIAENPHKFEFVEADAATLPRALPDLDGAVINTNVVLESGIDP 220 A +AT DI ENP K + E +AATLPR L D+D AVINTN LE+G+ P Sbjct: 161 AGVIKLKPDAGIKATVNDIVENPKKIKISELEAATLPRVLSDVDAAVINTNYALEAGLIP 220 Query: 221 -KSALFREDANSPYANVVVVRSGDENREEIKKLDEALTSPDVKTFIEDKYGVAVVPAF 277 K ALF E ANSPY NV+VVR GDE+R E+KKL EAL SP+VK FIE+ Y AVVPAF Sbjct: 221 TKDALFIESANSPYVNVLVVRKGDESRPELKKLAEALNSPEVKKFIEETYKGAVVPAF 278 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,366,087,667 Number of extensions: 53809655 Number of successful extensions: 117367 Number of sequences better than 1.0e-05: 1944 Number of HSP's gapped: 113707 Number of HSP's successfully gapped: 1946 Length of query: 277 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 143 Effective length of database: 1,798,280,193 Effective search space: 257154067599 Effective search space used: 257154067599 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 130 (54.7 bits)