BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0025.p (222 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D6Q0.1 B1D6Q0_9BACL Binding-protein-dependent transport system... 199 1e-49 A6LR32.1 A6LR32_CLOB8 Binding-protein-dependent transport system... 157 8e-37 A1HMH6.1 A1HMH6_9FIRM Binding-protein-dependent transport system... 134 6e-30 A5N6E5.1 A5N6E5_CLOK5 Predicted ABC transporter, permease component 130 6e-29 B9DZW5.1 B9DZW5_CLOK1 Putative uncharacterized protein 130 9e-29 >B1D6Q0.1 B1D6Q0_9BACL Binding-protein-dependent transport systems inner membrane component Length = 222 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 111/222 (50%), Positives = 133/222 (59%) Query: 1 MKEDMVELLWGGLKQTLYMVAWSSVFXXXXXXXXXXXXXXXERGGVLPAPRVNRLISTAI 60 MK D+ ELLW L++TLYMVAWSS+F ++G VL + VN++IS I Sbjct: 1 MKNDLFELLWKALRETLYMVAWSSLFALLLGLALGILLVVTDKGHVLQSVHVNKVISFLI 60 Query: 61 NGVRSXXXXXXXXXXXXXXXXXXGTSLGPTAAIVSLSIGAAPFLGRIIESSLREVEPGKI 120 NG+RS GTSLGPTAAIV+LSIGAAPFLGRI+E+SL+EV GKI Sbjct: 61 NGIRSIPFIILIVLLLPLARLIVGTSLGPTAAIVALSIGAAPFLGRIVENSLKEVGAGKI 120 Query: 121 EAAKSVGAHPLTIIAQVIIPEALPALVRGVTIAVISITEFTXXXXXXXXXXXXXXXXRFG 180 EAA +VGA P+TII +V+IPEALPALVRGVTIAVI ITE T RFG Sbjct: 121 EAAIAVGASPVTIIFRVLIPEALPALVRGVTIAVIGITELTAVAGAIGAGGLGSLAIRFG 180 Query: 181 YQRFRTDXXXXXXXXXXXXXXXXXWSGDYIAGSIDRKRFKSE 222 YQRFR D W+GD IA SI +R++ E Sbjct: 181 YQRFREDIMFATVLVIILLIQAIQWTGDGIAKSIHNRRYRLE 222 >A6LR32.1 A6LR32_CLOB8 Binding-protein-dependent transport systems inner membrane component Length = 222 Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 95/222 (42%), Positives = 125/222 (56%) Query: 1 MKEDMVELLWGGLKQTLYMVAWSSVFXXXXXXXXXXXXXXXERGGVLPAPRVNRLISTAI 60 M D+V+LL G ++TLYMV SS+ ++GG+ P +VN++ I Sbjct: 1 MSNDLVKLLLVGTEETLYMVLLSSIVAFLIGVPIGVLLVVTDKGGIFPLYKVNKIAGFLI 60 Query: 61 NGVRSXXXXXXXXXXXXXXXXXXGTSLGPTAAIVSLSIGAAPFLGRIIESSLREVEPGKI 120 N +RS GT+LG AAIVS+SIG+APF+ RIIE+SL+EVE GKI Sbjct: 61 NVIRSTPEIILIIILLPLSKFIVGTTLGANAAIVSISIGSAPFIARIIENSLKEVEFGKI 120 Query: 121 EAAKSVGAHPLTIIAQVIIPEALPALVRGVTIAVISITEFTXXXXXXXXXXXXXXXXRFG 180 EAA+S+GA P+ II +V++PEALP++VRG+TIA+I I FT RFG Sbjct: 121 EAAESMGATPIDIIKKVLLPEALPSIVRGITIAIIGIIGFTAIAGAIGAGGLGSLAIRFG 180 Query: 181 YQRFRTDXXXXXXXXXXXXXXXXXWSGDYIAGSIDRKRFKSE 222 YQRFRTD GD IA SI++KRFK E Sbjct: 181 YQRFRTDVLIGTVVILVIIVQAIQLIGDLIAKSINKKRFKFE 222 >A1HMH6.1 A1HMH6_9FIRM Binding-protein-dependent transport systems inner membrane component Length = 217 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 79/217 (36%), Positives = 112/217 (51%) Query: 1 MKEDMVELLWGGLKQTLYMVAWSSVFXXXXXXXXXXXXXXXERGGVLPAPRVNRLISTAI 60 M ++M+ LL L +T YMV S+ ++G VL VNR++ + Sbjct: 1 MSQEMLVLLAESLWETTYMVGVSAFIAALFGLPLGVILVTTDKGHVLENLVVNRVLGAIV 60 Query: 61 NGVRSXXXXXXXXXXXXXXXXXXGTSLGPTAAIVSLSIGAAPFLGRIIESSLREVEPGKI 120 N RS GTS+G AAIV LSI A PF+GRI+ES+L+EV+ G I Sbjct: 61 NATRSTPFIILMVAIIPLTRLIVGTSIGTDAAIVPLSIAAIPFVGRIVESALKEVDYGVI 120 Query: 121 EAAKSVGAHPLTIIAQVIIPEALPALVRGVTIAVISITEFTXXXXXXXXXXXXXXXXRFG 180 EAA+++GA PL IIA+V+IPEALP++V G+TI VIS+ ++ R+G Sbjct: 121 EAAQAMGASPLQIIAKVLIPEALPSIVLGLTITVISLIGYSAMAGAIGGGGLGDLAIRYG 180 Query: 181 YQRFRTDXXXXXXXXXXXXXXXXXWSGDYIAGSIDRK 217 YQRFR D GD++A +++K Sbjct: 181 YQRFRADIMLATVIILIAQVQLIQSCGDWLARRLNKK 217 >A5N6E5.1 A5N6E5_CLOK5 Predicted ABC transporter, permease component Length = 222 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 117/222 (52%) Query: 1 MKEDMVELLWGGLKQTLYMVAWSSVFXXXXXXXXXXXXXXXERGGVLPAPRVNRLISTAI 60 M +D + GL +T+ MV + +G +L R+N++++T + Sbjct: 1 MIDDFKIFVLKGLSETIEMVIIAGSIALLIGMPLGIILVVTRKGHILENERLNKILATIV 60 Query: 61 NGVRSXXXXXXXXXXXXXXXXXXGTSLGPTAAIVSLSIGAAPFLGRIIESSLREVEPGKI 120 N +RS GT+LG AAIV +SIG +P L RIIE+S+ +VE GKI Sbjct: 61 NAIRSLPSIILIVVLLPLARLIVGTTLGMKAAIVPISIGISPLLARIIETSIEQVEWGKI 120 Query: 121 EAAKSVGAHPLTIIAQVIIPEALPALVRGVTIAVISITEFTXXXXXXXXXXXXXXXXRFG 180 EAA S+GA P II++V+IPEALP+L++G+TI++ISI EFT RFG Sbjct: 121 EAALSMGAKPFQIISKVLIPEALPSLIKGITISIISIIEFTAIAGVIGAGGLGSLAIRFG 180 Query: 181 YQRFRTDXXXXXXXXXXXXXXXXXWSGDYIAGSIDRKRFKSE 222 YQRFR D +SGD I+ +++KR+K + Sbjct: 181 YQRFREDIMIVTVILLIFLVQFIQFSGDRISKHVNKKRYKFD 222 >B9DZW5.1 B9DZW5_CLOK1 Putative uncharacterized protein Length = 229 Score = 130 bits (327), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 117/222 (52%) Query: 1 MKEDMVELLWGGLKQTLYMVAWSSVFXXXXXXXXXXXXXXXERGGVLPAPRVNRLISTAI 60 M +D + GL +T+ MV + +G +L R+N++++T + Sbjct: 8 MIDDFKIFVLKGLSETIEMVIIAGSIALLIGMPLGIILVVTRKGHILENERLNKILATIV 67 Query: 61 NGVRSXXXXXXXXXXXXXXXXXXGTSLGPTAAIVSLSIGAAPFLGRIIESSLREVEPGKI 120 N +RS GT+LG AAIV +SIG +P L RIIE+S+ +VE GKI Sbjct: 68 NAIRSLPSIILIVVLLPLARLIVGTTLGMKAAIVPISIGISPLLARIIETSIEQVEWGKI 127 Query: 121 EAAKSVGAHPLTIIAQVIIPEALPALVRGVTIAVISITEFTXXXXXXXXXXXXXXXXRFG 180 EAA S+GA P II++V+IPEALP+L++G+TI++ISI EFT RFG Sbjct: 128 EAALSMGAKPFQIISKVLIPEALPSLIKGITISIISIIEFTAIAGVIGAGGLGSLAIRFG 187 Query: 181 YQRFRTDXXXXXXXXXXXXXXXXXWSGDYIAGSIDRKRFKSE 222 YQRFR D +SGD I+ +++KR+K + Sbjct: 188 YQRFREDIMIVTVILLIFLVQFIQFSGDRISKHVNKKRYKFD 229 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 808,926,512 Number of extensions: 19963650 Number of successful extensions: 74953 Number of sequences better than 1.0e-05: 1346 Number of HSP's gapped: 74486 Number of HSP's successfully gapped: 1346 Length of query: 222 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 91 Effective length of database: 1,826,543,238 Effective search space: 166215434658 Effective search space used: 166215434658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)