BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0024.p (260 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D6Q1.1 B1D6Q1_9BACL ABC transporter related 332 3e-89 A5N6E4.1 A5N6E4_CLOK5 Predicted ABC transporter, ATPase component 318 3e-85 B9DZW4.1 B9DZW4_CLOK1 Putative uncharacterized protein 318 3e-85 A6LR31.1 A6LR31_CLOB8 ABC transporter related 304 5e-81 B0K2A4.1 B0K2A4_THEPX ABC transporter related 298 4e-79 >B1D6Q1.1 B1D6Q1_9BACL ABC transporter related Length = 261 Score = 332 bits (850), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 167/249 (67%), Positives = 194/249 (77%) Query: 1 MIAVKHLHKSYATRLGRVSALEDINLQIAKGEIFGIIGASGAGKSTLIRCLNRLEQPDSG 60 MI V+ L K+Y T G VSAL+ I+LQIA GEIFG+IG SGAGKSTLIRC+NRLE+PDSG Sbjct: 1 MILVEQLSKTYLTTKGSVSALDRIDLQIATGEIFGVIGVSGAGKSTLIRCMNRLEEPDSG 60 Query: 61 SIEIGGVPITXXXXXXXXXXXXXIGMIFQQFNLLDAKTVYGNVAFPLRVAGCSKQYEKER 120 I IG IT IGMIFQ FNLLD KTVY NVAFPL VAG ++ ++R Sbjct: 61 RIWIGNDDITQLKGRRLRKARQKIGMIFQHFNLLDGKTVYQNVAFPLVVAGLPRERIRQR 120 Query: 121 VVEILELVGLSGKANVYPSQLSGGQKQRVGIARALAAEPDVLLSDEATSALDPQTTYSIL 180 V EIL+LV LS K YP+QLSGGQKQRVGIARALA EPDVLLSDEATSALDP+TTYSIL Sbjct: 121 VREILDLVKLSDKEGTYPAQLSGGQKQRVGIARALANEPDVLLSDEATSALDPETTYSIL 180 Query: 181 ELLEDINRKLNLTIVLITHEMDVLRHICRNAAVIEGGRIVENGPVEQLFYRPESETAKQF 240 ELL+DINR+L LTIVLITHE++VL+HIC + AVIE GRIVE GPV +LF PES+TA++F Sbjct: 181 ELLKDINRQLKLTIVLITHELEVLQHICDSMAVIEDGRIVETGPVAKLFLNPESDTARKF 240 Query: 241 VNIFNYYKD 249 V + Y++ Sbjct: 241 VGVLEQYRN 249 >A5N6E4.1 A5N6E4_CLOK5 Predicted ABC transporter, ATPase component Length = 259 Score = 318 bits (815), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 157/244 (64%), Positives = 186/244 (76%) Query: 1 MIAVKHLHKSYATRLGRVSALEDINLQIAKGEIFGIIGASGAGKSTLIRCLNRLEQPDSG 60 MI +++L+K++ T G+V L+DINL++ KG+IFGIIG SGAGKST+IRCLNRLE+P SG Sbjct: 1 MIDIRNLNKTFNTSKGKVEVLKDINLKVEKGDIFGIIGFSGAGKSTMIRCLNRLEEPTSG 60 Query: 61 SIEIGGVPITXXXXXXXXXXXXXIGMIFQQFNLLDAKTVYGNVAFPLRVAGCSKQYEKER 120 SI IG I IGMIFQ FNL D+ VY NVAFPL++AG S++ K R Sbjct: 61 SIFIGNNDIVAMNKAELREARKKIGMIFQDFNLFDSMNVYKNVAFPLKIAGYSEEKIKNR 120 Query: 121 VVEILELVGLSGKANVYPSQLSGGQKQRVGIARALAAEPDVLLSDEATSALDPQTTYSIL 180 V EIL LV LS K + YP+QLSGGQKQRVGIARALA EPDVLLSDEATSALDPQTTYSIL Sbjct: 121 VYEILNLVELSDKVDFYPAQLSGGQKQRVGIARALANEPDVLLSDEATSALDPQTTYSIL 180 Query: 181 ELLEDINRKLNLTIVLITHEMDVLRHICRNAAVIEGGRIVENGPVEQLFYRPESETAKQF 240 ELL DIN+KLNLTI+LITHE+DV+++IC N AVIE G IVE G +F P+S TAK+F Sbjct: 181 ELLRDINKKLNLTILLITHELDVIKYICNNMAVIENGSIVETGSTNSVFLNPKSNTAKKF 240 Query: 241 VNIF 244 V I Sbjct: 241 VKIM 244 >B9DZW4.1 B9DZW4_CLOK1 Putative uncharacterized protein Length = 271 Score = 318 bits (815), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 157/244 (64%), Positives = 186/244 (76%) Query: 1 MIAVKHLHKSYATRLGRVSALEDINLQIAKGEIFGIIGASGAGKSTLIRCLNRLEQPDSG 60 MI +++L+K++ T G+V L+DINL++ KG+IFGIIG SGAGKST+IRCLNRLE+P SG Sbjct: 13 MIDIRNLNKTFNTSKGKVEVLKDINLKVEKGDIFGIIGFSGAGKSTMIRCLNRLEEPTSG 72 Query: 61 SIEIGGVPITXXXXXXXXXXXXXIGMIFQQFNLLDAKTVYGNVAFPLRVAGCSKQYEKER 120 SI IG I IGMIFQ FNL D+ VY NVAFPL++AG S++ K R Sbjct: 73 SIFIGNNDIVAMNKAELREARKKIGMIFQDFNLFDSMNVYKNVAFPLKIAGYSEEKIKNR 132 Query: 121 VVEILELVGLSGKANVYPSQLSGGQKQRVGIARALAAEPDVLLSDEATSALDPQTTYSIL 180 V EIL LV LS K + YP+QLSGGQKQRVGIARALA EPDVLLSDEATSALDPQTTYSIL Sbjct: 133 VYEILNLVELSDKVDFYPAQLSGGQKQRVGIARALANEPDVLLSDEATSALDPQTTYSIL 192 Query: 181 ELLEDINRKLNLTIVLITHEMDVLRHICRNAAVIEGGRIVENGPVEQLFYRPESETAKQF 240 ELL DIN+KLNLTI+LITHE+DV+++IC N AVIE G IVE G +F P+S TAK+F Sbjct: 193 ELLRDINKKLNLTILLITHELDVIKYICNNMAVIENGSIVETGSTNSVFLNPKSNTAKKF 252 Query: 241 VNIF 244 V I Sbjct: 253 VKIM 256 >A6LR31.1 A6LR31_CLOB8 ABC transporter related Length = 259 Score = 304 bits (778), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 154/252 (61%), Positives = 190/252 (75%) Query: 1 MIAVKHLHKSYATRLGRVSALEDINLQIAKGEIFGIIGASGAGKSTLIRCLNRLEQPDSG 60 MI VK++ K++ T G+V L DI+L+IA+G+IFG+IG SGAGKSTLIRCLN LE+PDSG Sbjct: 1 MITVKNISKTFNTPTGKVEVLRDISLEIARGDIFGVIGFSGAGKSTLIRCLNGLEKPDSG 60 Query: 61 SIEIGGVPITXXXXXXXXXXXXXIGMIFQQFNLLDAKTVYGNVAFPLRVAGCSKQYEKER 120 +I IG IT IGMIFQQFNL D+KTVY N+AFPL ++G K+ K R Sbjct: 61 NIIIGENEITKLNGKELRSARKKIGMIFQQFNLFDSKTVYENIAFPLEISGYKKEEIKRR 120 Query: 121 VVEILELVGLSGKANVYPSQLSGGQKQRVGIARALAAEPDVLLSDEATSALDPQTTYSIL 180 V EILELV LS K + YP QLSGGQKQRVGIARALA +PDVLLSDEATSALDPQTT+SIL Sbjct: 121 VEEILELVELSEKRDSYPLQLSGGQKQRVGIARALANDPDVLLSDEATSALDPQTTFSIL 180 Query: 181 ELLEDINRKLNLTIVLITHEMDVLRHICRNAAVIEGGRIVENGPVEQLFYRPESETAKQF 240 ELL++IN++L+LTIV+ITHE+DVLR+ N V+E G IVE G E LF P+S+T K+F Sbjct: 181 ELLKNINQRLSLTIVIITHELDVLRYCTNNMVVLEDGHIVEEGNTENLFLNPKSDTLKKF 240 Query: 241 VNIFNYYKDGNK 252 + I +++ K Sbjct: 241 ITITKGFQNNGK 252 >B0K2A4.1 B0K2A4_THEPX ABC transporter related Length = 344 Score = 298 bits (762), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 148/241 (61%), Positives = 183/241 (75%) Query: 1 MIAVKHLHKSYATRLGRVSALEDINLQIAKGEIFGIIGASGAGKSTLIRCLNRLEQPDSG 60 MI +++L K Y + G V ALED+NL I KG+IFGIIG SGAGKSTL+RC+N LE+P SG Sbjct: 1 MIYIRNLTKVYHSASGNVRALEDVNLNIEKGDIFGIIGLSGAGKSTLLRCINMLEKPTSG 60 Query: 61 SIEIGGVPITXXXXXXXXXXXXXIGMIFQQFNLLDAKTVYGNVAFPLRVAGCSKQYEKER 120 SIEI GV +T IGMIFQ FNLL ++TV GNVAFPL +AG K+ ++ Sbjct: 61 SIEIDGVEMTRLSPSELKEMRKKIGMIFQHFNLLSSRTVRGNVAFPLEIAGLDKRTIDKK 120 Query: 121 VVEILELVGLSGKANVYPSQLSGGQKQRVGIARALAAEPDVLLSDEATSALDPQTTYSIL 180 V +LELVGLS KA+ YPSQLSGGQKQRVGIARALA +P VLL DE TSALDP+TT SIL Sbjct: 121 VENLLELVGLSDKADNYPSQLSGGQKQRVGIARALANDPKVLLCDEPTSALDPETTLSIL 180 Query: 181 ELLEDINRKLNLTIVLITHEMDVLRHICRNAAVIEGGRIVENGPVEQLFYRPESETAKQF 240 LL+DINR+L +TIVLITHEM+V++ IC AVIE R+VE GP+ ++F +P++ETA+ F Sbjct: 181 NLLKDINRELGITIVLITHEMNVIKQICNKVAVIEKSRVVEQGPLIEVFKKPQTETARNF 240 Query: 241 V 241 + Sbjct: 241 L 241 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,384,152,361 Number of extensions: 52181226 Number of successful extensions: 469462 Number of sequences better than 1.0e-05: 92207 Number of HSP's gapped: 355547 Number of HSP's successfully gapped: 97874 Length of query: 260 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 127 Effective length of database: 1,807,701,208 Effective search space: 229578053416 Effective search space used: 229578053416 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)