BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0020.p (303 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DD86.1 B1DD86_9BACL FAD-dependent pyridine nucleotide-disulphi... 409 e-112 C3J122.1 C3J122_9BACI FAD-dependent pyridine nucleotide-disulphi... 384 e-105 B7Y9X3.1 B7Y9X3_9BACI FAD-dependent pyridine nucleotide-disulphi... 384 e-105 Q5L030.1 Q5L030_GEOKA Glutamate synthasesmall subunit EC=1.4.1.13 384 e-105 C2QE08.1 C2QE08_BACCE Glutamate synthase, small subunit 383 e-104 >B1DD86.1 B1DD86_9BACL FAD-dependent pyridine nucleotide-disulphide oxidoreductase Length = 451 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 206/290 (71%), Positives = 239/290 (82%), Gaps = 4/290 (1%) Query: 1 VVIYEAKELAGGLDTHGIVSFRLPQSIPLWEVEQVRKLGVEIRTGMKVGVDVSVEELKAG 60 V ++EAKE AGGLDTHGIVSFRLPQ I LWEVEQV++LGVEIRTG+KVG+D+SVEELK Sbjct: 158 VTVFEAKEQAGGLDTHGIVSFRLPQEISLWEVEQVKQLGVEIRTGVKVGIDISVEELKQQ 217 Query: 61 YDAIVLAAGMGYVPPLGIEGEKLSGVYDAIELVETTKTGIPALELMGRRVAVIGAGNTAV 120 YDAIVLA GM VP LGI GE L GVYDAIE VE+TK+ I ++ G++VAVIGAGNTA+ Sbjct: 218 YDAIVLAIGMSKVPKLGIGGEGLRGVYDAIEFVESTKSSIRT-DIAGKKVAVIGAGNTAI 276 Query: 121 DAATCSVRLGAANVKMVYRRTPAEMTAYDFEYEFAKQEGVEFSWLTLPKRIVGDELGNVT 180 DAATCSVRLGA V +VYRRT EMTAYDFE++FAKQ+GV F WLT PKRIVGD GNVT Sbjct: 277 DAATCSVRLGADEVTIVYRRTSVEMTAYDFEFDFAKQDGVMFKWLTAPKRIVGDSAGNVT 336 Query: 181 ALECVQMKLTGETGKDGRLIPVPVEGSEFLMPVDAVVVAIGQKRRVDLIEALGLEHERGV 240 ALEC MKL E+G GR+ PVPVEGSEF M VDAVV+AIGQ R + L+E LGL H+RG+ Sbjct: 337 ALECTLMKLE-ESG--GRIRPVPVEGSEFFMDVDAVVLAIGQTRHIGLVEQLGLSHKRGI 393 Query: 241 VKIDEATGRTSDPQIYAAGDIVFGSGKGEATVVSAARQGKDAAYAIMQQM 290 V ID T +TSDPQ+YAAGD++FG G+GEA VVSAA+QGK AAYAI +Q+ Sbjct: 394 VAIDPVTFQTSDPQVYAAGDVIFGDGQGEAMVVSAAQQGKKAAYAIYRQL 443 >C3J122.1 C3J122_9BACI FAD-dependent pyridine nucleotide-disulphide oxidoreductase Length = 465 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 187/291 (64%), Positives = 232/291 (79%), Gaps = 1/291 (0%) Query: 1 VVIYEAKELAGGLDTHGIVSFRLPQSIPLWEVEQVRKLGVEIRTGMKVGVDVSVEELKAG 60 V I+EA+ AGGL+T+GIVSFRLPQ+I LWEV Q++ LGV+IRT +VG D+ V EL Sbjct: 169 VTIFEAENQAGGLNTYGIVSFRLPQNISLWEVNQIKSLGVQIRTNTRVGKDIEVNELLEN 228 Query: 61 YDAIVLAAGMGYVPPLGIEGEKLSGVYDAIELVETTKTGIPALELMGRRVAVIGAGNTAV 120 YDA+VLA GMG VP LGI GE L GVYDAIEL++ TKT L+G+RV VIGAGNTA+ Sbjct: 229 YDAVVLAVGMGKVPKLGIPGEDLDGVYDAIELIKETKTKPLTDRLVGKRVVVIGAGNTAI 288 Query: 121 DAATCSVRLGAANVKMVYRRTPAEMTAYDFEYEFAKQEGVEFSWLTLPKRIVGDELGNVT 180 DAATCSVRLGA NVK++YRRT EMTAY+FEYEFAKQ+GVEF WLT PKRI+GD G VT Sbjct: 289 DAATCSVRLGAENVKILYRRTKEEMTAYEFEYEFAKQDGVEFRWLTAPKRIIGDSKGKVT 348 Query: 181 ALECVQMKLTGETGKDGRLIPVPVEGSEFLMPVDAVVVAIGQKRRVDLIEALGLEHERGV 240 +ECV+M+L GE DGR P+PVEGSEF+MPVD V+ AIGQ+R ++LIEA GLEH+ GV Sbjct: 349 HVECVRMEL-GEPDADGRRRPLPVEGSEFIMPVDVVIKAIGQERHIELIEAFGLEHDHGV 407 Query: 241 VKIDEATGRTSDPQIYAAGDIVFGSGKGEATVVSAARQGKDAAYAIMQQMS 291 VK++ T +TS+P+++A GD++F GKGEA VV AA+QGK+AAY I + ++ Sbjct: 408 VKVNPETYQTSNPKVFACGDVIFERGKGEAMVVVAAQQGKEAAYGIHRYLT 458 >B7Y9X3.1 B7Y9X3_9BACI FAD-dependent pyridine nucleotide-disulphide oxidoreductase Length = 465 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 187/291 (64%), Positives = 232/291 (79%), Gaps = 1/291 (0%) Query: 1 VVIYEAKELAGGLDTHGIVSFRLPQSIPLWEVEQVRKLGVEIRTGMKVGVDVSVEELKAG 60 V I+EA+ AGGL+T+GIVSFRLPQ+I LWEV Q++ LGV+IRT +VG D+ V EL Sbjct: 169 VTIFEAENQAGGLNTYGIVSFRLPQNISLWEVNQIKSLGVQIRTNTRVGKDIEVNELLEN 228 Query: 61 YDAIVLAAGMGYVPPLGIEGEKLSGVYDAIELVETTKTGIPALELMGRRVAVIGAGNTAV 120 YDA+VLA GMG VP LGI GE L GVYDAIEL++ TKT L+G+RV VIGAGNTA+ Sbjct: 229 YDAVVLAVGMGKVPKLGIPGEDLDGVYDAIELIKETKTKPLTDRLVGKRVVVIGAGNTAI 288 Query: 121 DAATCSVRLGAANVKMVYRRTPAEMTAYDFEYEFAKQEGVEFSWLTLPKRIVGDELGNVT 180 DAATCSVRLGA NVK++YRRT EMTAY+FEYEFAKQ+GVEF WLT PKRI+GD G VT Sbjct: 289 DAATCSVRLGAENVKILYRRTKEEMTAYEFEYEFAKQDGVEFRWLTAPKRIIGDSKGKVT 348 Query: 181 ALECVQMKLTGETGKDGRLIPVPVEGSEFLMPVDAVVVAIGQKRRVDLIEALGLEHERGV 240 +ECV+M+L GE DGR P+PVEGSEF+MPVD V+ AIGQ+R ++LIEA GLEH+ GV Sbjct: 349 HVECVRMEL-GEPDADGRRRPLPVEGSEFIMPVDVVIKAIGQERHIELIEAFGLEHDHGV 407 Query: 241 VKIDEATGRTSDPQIYAAGDIVFGSGKGEATVVSAARQGKDAAYAIMQQMS 291 VK++ T +TS+P+++A GD++F GKGEA VV AA+QGK+AAY I + ++ Sbjct: 408 VKVNPETYQTSNPKVFACGDVIFERGKGEAMVVVAAQQGKEAAYGIHRYLT 458 >Q5L030.1 Q5L030_GEOKA Glutamate synthasesmall subunit EC=1.4.1.13 Length = 449 Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust. Identities = 187/291 (64%), Positives = 232/291 (79%), Gaps = 1/291 (0%) Query: 1 VVIYEAKELAGGLDTHGIVSFRLPQSIPLWEVEQVRKLGVEIRTGMKVGVDVSVEELKAG 60 V I+EA+ AGGL+T+GIVSFRLPQ+I LWEV Q++ LGV+IRT +VG D+ V EL Sbjct: 153 VTIFEAENQAGGLNTYGIVSFRLPQNISLWEVNQIKSLGVQIRTNTRVGKDIEVNELLEN 212 Query: 61 YDAIVLAAGMGYVPPLGIEGEKLSGVYDAIELVETTKTGIPALELMGRRVAVIGAGNTAV 120 YDA+VLA GMG VP LGI GE L GVYDAIEL++ TKT L+G+RV VIGAGNTA+ Sbjct: 213 YDAVVLAVGMGKVPKLGIPGEDLDGVYDAIELIKETKTKPLTDRLVGKRVVVIGAGNTAI 272 Query: 121 DAATCSVRLGAANVKMVYRRTPAEMTAYDFEYEFAKQEGVEFSWLTLPKRIVGDELGNVT 180 DAATCSVRLGA NVK++YRRT EMTAY+FEYEFAKQ+GVEF WLT PKRI+GD G VT Sbjct: 273 DAATCSVRLGAENVKILYRRTKEEMTAYEFEYEFAKQDGVEFRWLTAPKRIIGDSKGKVT 332 Query: 181 ALECVQMKLTGETGKDGRLIPVPVEGSEFLMPVDAVVVAIGQKRRVDLIEALGLEHERGV 240 +ECV+M+L GE DGR P+PVEGSEF+MPVD V+ AIGQ+R ++LIEA GLEH+ GV Sbjct: 333 HVECVRMEL-GEPDADGRRRPLPVEGSEFIMPVDVVIKAIGQERHIELIEAFGLEHDHGV 391 Query: 241 VKIDEATGRTSDPQIYAAGDIVFGSGKGEATVVSAARQGKDAAYAIMQQMS 291 VK++ T +TS+P+++A GD++F GKGEA VV AA+QGK+AAY I + ++ Sbjct: 392 VKVNPETYQTSNPKVFACGDVIFERGKGEAMVVVAAQQGKEAAYGIHRYLT 442 >C2QE08.1 C2QE08_BACCE Glutamate synthase, small subunit Length = 462 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 189/303 (62%), Positives = 230/303 (75%), Gaps = 2/303 (0%) Query: 1 VVIYEAKELAGGLDTHGIVSFRLPQSIPLWEVEQVRKLGVEIRTGMKVGVDVSVEELKAG 60 V I+EAKE AGGLDT+GIVSFRLPQ + LWEV+QV+KLGV+I T KVG D+ V EL Sbjct: 161 VTIFEAKEKAGGLDTYGIVSFRLPQEVSLWEVDQVKKLGVKILTNTKVGKDIIVSELMNS 220 Query: 61 YDAIVLAAGMGYVPPLGIEGEKLSGVYDAIELVETTKTGIPALELMGRRVAVIGAGNTAV 120 +D IVLA GM VP L IEGE L GVYDAI+ VE TK+ P +G R+AVIGAGNTA+ Sbjct: 221 FDVIVLAIGMSSVPNLNIEGENLKGVYDAIQFVENTKSKEPTSRFLGSRIAVIGAGNTAI 280 Query: 121 DAATCSVRLGAANVKMVYRRTPAEMTAYDFEYEFAKQEGVEFSWLTLPKRIVGDELGNVT 180 DAATCSVRLGA NVKM+YRRT EM AY FEYEFAKQ+GVEF WLT PKRI+GDE G+V Sbjct: 281 DAATCSVRLGAENVKMIYRRTQEEMPAYQFEYEFAKQDGVEFKWLTQPKRIIGDENGHVK 340 Query: 181 ALECVQMKLTGETGKDGRLIPVPVEGSEFLMPVDAVVVAIGQKRRVDLIEALGLEHERGV 240 LEC++M+L E GR +P+EGSEF++ VDAV+ AIGQ R + LIE GL H +G+ Sbjct: 341 QLECIRMELGAEDS-SGRRRSIPIEGSEFIIEVDAVIKAIGQTRYIKLIEEFGLLHNKGI 399 Query: 241 VKIDEATGRTSDPQIYAAGDIVFGSGKGEATVVSAARQGKDAAYAIMQQMSGLQ-DGVLG 299 VKI+ T +TS+P+I+AAGD+VFG G+GEA VVSAA QGK AYAI + + G + DG++ Sbjct: 400 VKINPKTNQTSNPKIFAAGDVVFGDGQGEAMVVSAAEQGKQTAYAIHKYVFGYKLDGMMK 459 Query: 300 PIL 302 +L Sbjct: 460 EVL 462 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,796,977,935 Number of extensions: 76871551 Number of successful extensions: 243080 Number of sequences better than 1.0e-05: 2532 Number of HSP's gapped: 237163 Number of HSP's successfully gapped: 2537 Length of query: 303 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 168 Effective length of database: 1,788,859,178 Effective search space: 300528341904 Effective search space used: 300528341904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)