BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0019.p
         (143 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DD86.1 B1DD86_9BACL FAD-dependent pyridine nucleotide-disulphi...   199   6e-50
C3J122.1 C3J122_9BACI FAD-dependent pyridine nucleotide-disulphi...   196   7e-49
B7Y9X3.1 B7Y9X3_9BACI FAD-dependent pyridine nucleotide-disulphi...   196   7e-49
Q5L030.1 Q5L030_GEOKA Glutamate synthasesmall subunit EC=1.4.1.13     195   1e-48
Q846U7.1 Q846U7_9BACL Glutamate synthase small subunit protein        194   2e-48

>B1DD86.1 B1DD86_9BACL FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase
          Length = 451

 Score =  199 bits (507), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 91/123 (73%), Positives = 103/123 (83%)

Query: 2   FRRNFAEAEPGLTRKGAIEESNRCLYCYDAPCIKACPTSINIPSFIKRIATGNLKGSAQT 61
            RRNFAE + G+  K AIEESNRCLYCYDAPCIKACPT INIPSFIK+IA+GN+KGSA+ 
Sbjct: 11  LRRNFAEVKAGMKPKEAIEESNRCLYCYDAPCIKACPTGINIPSFIKKIASGNMKGSARA 70

Query: 62  IMDSNPVGASCARVCPTEELCEGACVLNDDSAPVQIGLLQRYATDWAISSGTRLFKPGLP 121
           IM++NPVGASC+RVCPTEELCEGACVLN  S P+ IG LQRYATDWAI +   LFK G  
Sbjct: 71  IMEANPVGASCSRVCPTEELCEGACVLNHSSKPIMIGDLQRYATDWAIRNEQVLFKAGSS 130

Query: 122 NGR 124
           NG+
Sbjct: 131 NGK 133


>C3J122.1 C3J122_9BACI FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase
          Length = 465

 Score =  196 bits (497), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 87/123 (70%), Positives = 103/123 (83%)

Query: 2   FRRNFAEAEPGLTRKGAIEESNRCLYCYDAPCIKACPTSINIPSFIKRIATGNLKGSAQT 61
             +NF E EPGLT + A+EE+NRCLYCYDAPCI+ACPT I+IP+FIK+IA+GN+KGSA+T
Sbjct: 22  LEKNFEEVEPGLTDREAMEEANRCLYCYDAPCIRACPTGIDIPAFIKKIASGNVKGSAKT 81

Query: 62  IMDSNPVGASCARVCPTEELCEGACVLNDDSAPVQIGLLQRYATDWAISSGTRLFKPGLP 121
           IM SNPVGASCARVCPTEELCEGACVLN  + P+ IG LQRYATDWAI +   LF+ G  
Sbjct: 82  IMLSNPVGASCARVCPTEELCEGACVLNHSTKPIMIGKLQRYATDWAIRNKEVLFQAGRK 141

Query: 122 NGR 124
           NG+
Sbjct: 142 NGK 144


>B7Y9X3.1 B7Y9X3_9BACI FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase
          Length = 465

 Score =  196 bits (497), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 87/123 (70%), Positives = 103/123 (83%)

Query: 2   FRRNFAEAEPGLTRKGAIEESNRCLYCYDAPCIKACPTSINIPSFIKRIATGNLKGSAQT 61
             +NF E EPGLT + A+EE+NRCLYCYDAPCI+ACPT I+IP+FIK+IA+GN+KGSA+T
Sbjct: 22  LEKNFEEVEPGLTDREAMEEANRCLYCYDAPCIRACPTGIDIPAFIKKIASGNVKGSAKT 81

Query: 62  IMDSNPVGASCARVCPTEELCEGACVLNDDSAPVQIGLLQRYATDWAISSGTRLFKPGLP 121
           IM SNPVGASCARVCPTEELCEGACVLN  + P+ IG LQRYATDWAI +   LF+ G  
Sbjct: 82  IMLSNPVGASCARVCPTEELCEGACVLNHSTKPIMIGKLQRYATDWAIRNKEVLFQAGRK 141

Query: 122 NGR 124
           NG+
Sbjct: 142 NGK 144


>Q5L030.1 Q5L030_GEOKA Glutamate synthasesmall subunit EC=1.4.1.13
          Length = 449

 Score =  195 bits (495), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 87/123 (70%), Positives = 103/123 (83%)

Query: 2   FRRNFAEAEPGLTRKGAIEESNRCLYCYDAPCIKACPTSINIPSFIKRIATGNLKGSAQT 61
             +NF E EPGLT + A+EE+NRCLYCYDAPCI+ACPT I+IP+FIK+IA+GN+KGSA+T
Sbjct: 6   LEKNFEEVEPGLTDREAMEEANRCLYCYDAPCIRACPTGIDIPAFIKKIASGNVKGSAKT 65

Query: 62  IMDSNPVGASCARVCPTEELCEGACVLNDDSAPVQIGLLQRYATDWAISSGTRLFKPGLP 121
           IM SNPVGASCARVCPTEELCEGACVLN  + P+ IG LQRYATDWAI +   LF+ G  
Sbjct: 66  IMLSNPVGASCARVCPTEELCEGACVLNHSTKPIMIGKLQRYATDWAIRNKEVLFQAGRK 125

Query: 122 NGR 124
           NG+
Sbjct: 126 NGK 128


>Q846U7.1 Q846U7_9BACL Glutamate synthase small subunit protein
          Length = 448

 Score =  194 bits (493), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/123 (72%), Positives = 104/123 (84%)

Query: 2   FRRNFAEAEPGLTRKGAIEESNRCLYCYDAPCIKACPTSINIPSFIKRIATGNLKGSAQT 61
            ++NF+E    L  K AI+E+NRCLYCYDAPCIKACPTSI+IPSFI++IATGNL GSA+T
Sbjct: 7   LQKNFSEVVSALKPKEAIDEANRCLYCYDAPCIKACPTSIDIPSFIRKIATGNLLGSART 66

Query: 62  IMDSNPVGASCARVCPTEELCEGACVLNDDSAPVQIGLLQRYATDWAISSGTRLFKPGLP 121
           IM+SNPVGASCARVCPTEELCEGACVLN  S P+ IGLLQR+ATDWAI +   LF+ G P
Sbjct: 67  IMESNPVGASCARVCPTEELCEGACVLNHASKPIMIGLLQRHATDWAIRNNAALFQKGDP 126

Query: 122 NGR 124
           NG+
Sbjct: 127 NGK 129


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 806,459,376
Number of extensions: 29863932
Number of successful extensions: 55869
Number of sequences better than 1.0e-05: 1243
Number of HSP's gapped: 55737
Number of HSP's successfully gapped: 1243
Length of query: 143
Length of database: 3,060,696,203
Length adjustment: 106
Effective length of query: 37
Effective length of database: 2,062,068,613
Effective search space: 76296538681
Effective search space used: 76296538681
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)