BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0018.p (526 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZEL5.1 C0ZEL5_BREBN Putative transcriptional regulator 302 5e-80 A3IE87.1 A3IE87_9BACI Putative uncharacterized protein 281 9e-74 B1HVU1.1 B1HVU1_LYSSC Putative uncharacterized protein 281 2e-73 B1DD82.1 B1DD82_9BACL Transcriptional regulator, CdaR 276 3e-72 Q5L026.1 Q5L026_GEOKA Putative uncharacterized protein GK1425 243 3e-62 >C0ZEL5.1 C0ZEL5_BREBN Putative transcriptional regulator Length = 544 Score = 302 bits (774), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 186/522 (35%), Positives = 294/522 (56%), Gaps = 23/522 (4%) Query: 1 VHVLESAGFESLIHGEEMILTTGMGASAGLPSSLSFMQNLIDKNAACLCIELGDYFSSIP 60 VHVLE+A ++G E+IL+TG+G L+++ LI + A LCIELG Y SIP Sbjct: 37 VHVLETADTGQFLNGGELILSTGLGFGEEKEKRLAYLTELIRRKAVGLCIELGRYIPSIP 96 Query: 61 QEMIDLANRHDFPLIIFPRTVRFVDITLDLHSLIINRHHRMLQELESISREFHRLTLTSQ 120 ++M++LAN H FPL++F R VRFVDIT DLH +I+ + L+ LE+ SR +L+L + Sbjct: 97 EDMLELANHHQFPLLVFQRPVRFVDITQDLHEHLIHAQMQALRNLEAYSRSLQQLSLQAA 156 Query: 121 GTIKVLQLLCKSTRTQIVYMQPQGKPLFFPALSPEDQAP-----LLSFFEAFGEEMEGVQ 175 G +K+LQ + +TQ+ Y P G F P + P D A + S F GV+ Sbjct: 157 GILKLLQHFQVAVQTQVFYYAPDGSTQFAPVV-PHDVAVEMSDLMRSHFSELDSSEAGVR 215 Query: 176 PDAAPYIRDYGHKTIALKPVGALDQTWAYILMVCNHK-PQEFDCLLLDSASLSIAQELLR 234 ++ + +A +PV A+ AY+ +V + P E+ L LD+ ++AQ L+R Sbjct: 216 -----FLSLSTTRQLAYQPVMAMGHVLAYVGIVLYERSPDEYLLLTLDNTVSAMAQILMR 270 Query: 235 TRYMEERKLFSENLWVDELIGGRTQDDNRLKGLVGPDFNVVNELPYRVCLVEIENSRDVK 294 ++EE+ L +EN D+LI R+ + +++ L+G N Y + ++ E +++ Sbjct: 271 KMFVEEQALATENRLFDDLIANRSIPEEQMRSLLGITGN-SKATGYHMIILSFEKPKNLA 329 Query: 295 WNS-SENDWESITFHLSLILRSIFEKYSLRPLITLKNNRLTVIALDIRSKLPGKLRLQQA 353 +S +D L+ I RS+ ++ RP I +R + ++ R + L++A Sbjct: 330 EDSLPPHD-------LTAIFRSLLTRHHFRPFIRCMGHRFYFLLIEQRPLADSRRTLEKA 382 Query: 354 LDALQHIHSDAKLKDLQLVIGVSKSHRGLKHAYAAYQEAVQALSLYSCYQKSILFYEELG 413 ++ I + D+ + +GVS++ + L A EA QAL+ C + S F+ +LG Sbjct: 383 FREVKRIMTQMLGADVPIRMGVSRAGKRLSDAGRHLAEAEQALAF--CQESSSPFFADLG 440 Query: 414 VFQLLLSLNDGKTLENFIRSYLGPLIDHDSAKGSELLLTLRVYLDHDGSKQIAARNLFIV 473 +F+LL + L+ FI YLGPL+ HD A GS L+ TLRVYLD + SKQ AA LFI Sbjct: 441 LFRLLFHVPSEPVLKTFISDYLGPLLAHDQAHGSSLVHTLRVYLDSNLSKQEAAEKLFIH 500 Query: 474 RQSLYYRLDKITELLGEDFMLPENRISIQVALRAYQLLYPEK 515 RQ+LY+RL+KI E+LGED+ +NRI +++A+RA + L E+ Sbjct: 501 RQTLYHRLEKIEEILGEDYTATQNRICLEIAMRAQEWLSKEE 542 >A3IE87.1 A3IE87_9BACI Putative uncharacterized protein Length = 545 Score = 281 bits (720), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 168/516 (32%), Positives = 284/516 (55%), Gaps = 23/516 (4%) Query: 2 HVLESAGFESLIHGEEMILTTGMGASAGLPSSLSFMQNLIDKNAACLCIELGDYFSSIPQ 61 H+LE F++LI+G E+ILTTG+G + ++++QNLI AA LCIE+GDYF +P Sbjct: 37 HILEIKDFDTLINGGELILTTGVGLQLERETQIAYLQNLIRNEAAGLCIEIGDYFDHVPV 96 Query: 62 EMIDLANRHDFPLIIFPRTVRFVDITLDLHSLIINRHHRMLQELESISREFHRLTLTSQG 121 E+I +AN H FP+I+F VRF+DIT DLH+ IIN+H + L +L+++S+ F L+L G Sbjct: 97 ELIAMANAHHFPIIVFEEIVRFIDITQDLHTYIINQHQQALTQLDTLSKTFMELSLMPNG 156 Query: 122 TIKVLQLLCKSTRTQIVYMQPQGKPLFFPALSPEDQAPLLSFFEAFGEEMEGVQPDAAPY 181 +K+LQ+L + T +++ K ++P + L E +++E +P Sbjct: 157 ILKILQVLHQDTEAPFLFVSEDTKSFYYPV----EAKKYLRMMEEHCQQLELQEPLHLLS 212 Query: 182 IRDYGHKTIALKPVGALDQTWAYILMVCNH----KPQEFDCLLLDSASLSIAQELLRTRY 237 I D H I PV L Q W Y+ C H KP ++ L L+ A++SIA L+R R Sbjct: 213 I-DKDHFVII--PVNGLGQVWGYL---CMHSGLPKPSDYTLLNLERATMSIAHILMRNRM 266 Query: 238 MEERKLFSENLWVDELIGGRTQDDNRLKGLVGPDFNVVNELPYRVCLVEIENSRDVKWNS 297 ++ER+ E+ ++ LI G+ D + + + L YRV + + + V Sbjct: 267 LQERQQSREDEFILALIQGQPVDIQYYQSYLPIE---SRNLFYRVVVFNLHDEAKV---V 320 Query: 298 SENDWESITFHLSLILRSIFEKYSLRPLITLKNNRLTVIALDIRSKLPGKLR--LQQALD 355 E +W+ I ++ +RSI +K P ++++ + + ++A I + R QA+ Sbjct: 321 PEEEWQEIQLQNAMYVRSILKKLGFFPTVSVRQHEIIILAFYIAADYMKDNRDSFDQAIA 380 Query: 356 ALQHIHSDAKLKDLQLVIGVSKSHRGLKHAYAAYQEAVQALSLYSCYQKSILFYEELGVF 415 + + + L L G+S ++ ++ + Y+EA + + S ++Y++LGVF Sbjct: 381 QIVARKASQFFEQLTLTCGISNVYQTIESVHLGYKEAKSVIQMQHHQLTSSIYYKDLGVF 440 Query: 416 QLLLSLNDGKTLENFIRSYLGPLIDHDSAKGSELLLTLRVYLDHDGSKQIAARNLFIVRQ 475 +LLL + L F++ YL L+ D G +L TL VYL +G+K A LFIVRQ Sbjct: 441 RLLLQ-QEQTALLQFVKDYLQELLLLDQKNGHDLFQTLAVYLACNGAKNDTAEQLFIVRQ 499 Query: 476 SLYYRLDKITELLGEDFMLPENRISIQVALRAYQLL 511 +LY R++++ + G DF+ +R++I++A++AY+LL Sbjct: 500 TLYKRIERLESIFGADFLQAPHRLNIEIAVKAYELL 535 >B1HVU1.1 B1HVU1_LYSSC Putative uncharacterized protein Length = 545 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 170/517 (32%), Positives = 287/517 (55%), Gaps = 23/517 (4%) Query: 1 VHVLESAGFESLIHGEEMILTTGMGASAGLPSSLSFMQNLIDKNAACLCIELGDYFSSIP 60 H+LE F++LI+G E+ILTTG+G + ++++QNLI AA LCIE+GDYF +P Sbjct: 36 THILEIKDFDTLINGGELILTTGVGLQLERETQIAYLQNLIRNEAAGLCIEIGDYFDHVP 95 Query: 61 QEMIDLANRHDFPLIIFPRTVRFVDITLDLHSLIINRHHRMLQELESISREFHRLTLTSQ 120 E+I +AN H FP+I+F VRF+DIT DLH+ IIN+H + L +L+++S+ F L+L Sbjct: 96 VELIAMANAHHFPIIVFEEIVRFIDITQDLHTYIINQHQQALTQLDTLSKTFMELSLMPN 155 Query: 121 GTIKVLQLLCKSTRTQIVYMQPQGKPLFFPALSPEDQAPLLSFFEAFGEEMEGVQPDAAP 180 G +K+LQ+L + T +++ K ++P + + L E +++E +P Sbjct: 156 GILKILQVLHQDTEALFLFVSEDTKSFYYPVEAKKH----LRMMEEHCQQLELQEPLHLL 211 Query: 181 YIRDYGHKTIALKPVGALDQTWAYILMVCNH----KPQEFDCLLLDSASLSIAQELLRTR 236 I D H I PV L Q W Y+ C H KP ++ L L+ A++SIAQ L+R R Sbjct: 212 SI-DKDHFVII--PVNGLGQVWGYL---CMHSELPKPSDYTLLNLERATMSIAQILMRNR 265 Query: 237 YMEERKLFSENLWVDELIGGRTQDDNRLKGLVGPDFNVVNELPYRVCLVEIENSRDVKWN 296 ++ER+ E+ ++ LI G+ D + + + L YRV + N D Sbjct: 266 MLQERQQSREDEFILALIQGQPVDVPYYQSYLPIE---SRNLFYRVVVF---NLHDETKA 319 Query: 297 SSENDWESITFHLSLILRSIFEKYSLRPLITLKNNRLTVIALDIRSKLPGKLR--LQQAL 354 E +W+ I ++ +RSI +K P ++++ + + +++ I + R QA+ Sbjct: 320 VPEEEWQEIQLQNAMYVRSILKKLGFFPTVSVRQHEIIILSFYIAADYMKDNRDSFNQAI 379 Query: 355 DALQHIHSDAKLKDLQLVIGVSKSHRGLKHAYAAYQEAVQALSLYSCYQKSILFYEELGV 414 + + + L L G+S ++ ++ + Y+EA ++ + S ++Y++LGV Sbjct: 380 SQIVARKASQFFEQLSLTCGISNVYQTIESVHLGYKEAKSSIQMQHHQLTSSIYYKDLGV 439 Query: 415 FQLLLSLNDGKTLENFIRSYLGPLIDHDSAKGSELLLTLRVYLDHDGSKQIAARNLFIVR 474 F+LLL + TL F++ YL L+ D G +L TL VYL +G+K A LFIVR Sbjct: 440 FRLLLQ-QEQTTLLQFVKDYLLELLLLDQKNGHDLFQTLAVYLACNGAKNDTAEQLFIVR 498 Query: 475 QSLYYRLDKITELLGEDFMLPENRISIQVALRAYQLL 511 Q+LY R++++ + G DF+ +R++I++A++AY+LL Sbjct: 499 QTLYKRIERLESIFGADFLQAPHRLNIEIAVKAYELL 535 >B1DD82.1 B1DD82_9BACL Transcriptional regulator, CdaR Length = 537 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 168/515 (32%), Positives = 284/515 (55%), Gaps = 22/515 (4%) Query: 1 VHVLESAGFESLIHGEEMILTTGMGASAGLPSSLSFMQNLIDKNAACLCIELGDYFSSIP 60 VH++E L+ G E+IL+TG+G SLSF++ LID A+ LCIELG Y Sbjct: 38 VHIMEVTQIGKLLSGNELILSTGIGWHDDEELSLSFLRQLIDSGASGLCIELGTYTKKPS 97 Query: 61 QEMIDLANRHDFPLIIFPRTVRFVDITLDLHSLIINRHHRMLQELESISREFHRLTLTSQ 120 MI+LA R +FPL+ F VR++DIT DLH+ I++HHRM+ ELE++S + ++L L+ + Sbjct: 98 DAMIELAERENFPLLFFHEEVRYIDITQDLHAYFIHQHHRMVYELEALSTKLNQLLLSGK 157 Query: 121 GTIKVLQLLCKSTRTQIVYMQPQGKPLFFPALSPEDQAPLLSFFEA--FGEEMEGVQPDA 178 G + +L+LL +T TQ+ + + F P + P+ +A SF+E +GE A Sbjct: 158 GIMPLLKLLHHTTGTQVAFFPLNAEAEFIPHM-PKAKAD--SFYEQWIYGEMF------A 208 Query: 179 APYIRDYGHKTIALKPVGALDQTWAYILMVCNHKPQEFDCLLLDSASLSIAQELLRTRYM 238 P ++ + +A +P+ ALD +A +L+ + EF L LD + +IAQE++RT+YM Sbjct: 209 TPDLK----RGLAHRPILALDHLFADLLLQSEQELSEFQVLALDRCATAIAQEMMRTKYM 264 Query: 239 EERKLFSENLWVDELIGGRTQDDNRLKGLVGPDFNVVNELPYRVCLVEIENSRDVKWNSS 298 EER+ + + +WV + + G+ + ++ + VC+ + N + +W Sbjct: 265 EERRRYKDEMWVTDWLSGK-HAEKEVREYISSIRPAAKLYGLTVCIFRL-NLKLAEWKEG 322 Query: 299 ENDWESITFHLSLILRSIFEKYSLRPLITLKNNRLTVIALDIRSKLPGKLRLQQALDALQ 358 E + +++ R+IFE L + ++ + + +D +L K RL +A+D L+ Sbjct: 323 EE----LLIQKNMVARAIFEGEGYFLLPAILHDHIVFVLIDQMKQLKWKDRLLRAIDRLR 378 Query: 359 HIHSDAKLKDLQLVIGVSKSHRGLKHAYAAYQEAVQALSLYSCYQK-SILFYEELGVFQL 417 + +G+ K L A Y+ A + +++ + S F+ +L +++ Sbjct: 379 KTEHNPDSALFAGTLGIGKYLTDLSRAKEGYESAQETVAIQTDIGPLSSPFFNDLHTYRI 438 Query: 418 LLSLNDGKTLENFIRSYLGPLIDHDSAKGSELLLTLRVYLDHDGSKQIAARNLFIVRQSL 477 + L L I Y+GPL +D K +LL TL+V+L GSKQ A+ LFIVRQ+L Sbjct: 439 ISGLKKTGMLPALIEEYIGPLARYDQEKNGQLLKTLKVFLSLSGSKQDTAKELFIVRQTL 498 Query: 478 YYRLDKITELLGEDFMLPENRISIQVALRAYQLLY 512 Y+RL+KI LLG+D+++ + R++I++AL AY+ Y Sbjct: 499 YHRLEKIASLLGDDYLVADKRLAIELALNAYEYTY 533 >Q5L026.1 Q5L026_GEOKA Putative uncharacterized protein GK1425 Length = 542 Score = 243 bits (620), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 161/518 (31%), Positives = 278/518 (53%), Gaps = 30/518 (5%) Query: 1 VHVLESAGFESLIHGEEMILTTGMGASAGLPSSLSFMQNLIDKNAACLCIELGDYFSSIP 60 VHV+E A L++G+E+IL+TG+G SF++ LI+ +A+ LCIE+G + S+P Sbjct: 36 VHVVEVAKIHHLLNGKELILSTGVGWKENKELFRSFVEQLINCDASGLCIEIGMHTPSVP 95 Query: 61 QEMIDLANRHDFPLIIFPRTVRFVDITLDLHSLIINRHHRMLQELESISREFHRLTLTSQ 120 QE+IDLAN H FP+I+F + V FV+IT D+H+ +IN+H+ ++ LES S++ ++ L+ Sbjct: 96 QEVIDLANAHHFPIILFLKEVPFVEITQDIHTYLINQHYEIISGLESYSQQLNKKLLSMD 155 Query: 121 GTIKVLQLLCKSTRTQIVYMQPQGKPLFFPALSPEDQAPLLSFFEAFGEEMEGVQPDAAP 180 ++L+LL + Q+V+ + FP S + F EE V +AA Sbjct: 156 HYSEILKLLHHYSGHQVVFKINGREVEIFPKYS-----------KTFKEEQLIVDDNAA- 203 Query: 181 YIRDYGHKTIALKPVGALDQTWAYILMVCNHKP-QEFDCLLLDSASLSIAQELLRTRYME 239 K +A +P+ L +A + +V K EFD L+LD + ++AQ LLR Y++ Sbjct: 204 -----SKKRVATQPIQFLGNEYAELSIVSTGKEISEFDLLILDRTATALAQHLLRDLYVD 258 Query: 240 ERKLFSENLWVDELIGGRTQDDNRLKGLVGPDFNVVNELPYRVCLVEIENSRDVKWNSSE 299 E+K EN W+ + G +N L ++ LV V++ SS Sbjct: 259 EKKRVEENEWLKSWLEGEHPIENVFSYL--AEYGAEPNPKGGTVLV-------VRFKSSM 309 Query: 300 NDWESI-TFHLSLILRSIFEKYSLRPLITLKNNRLTVIALDIRSKLPGKLRLQQALDALQ 358 ++ + ++ R+IFE+ ++ + I ++ R K R++ L++L Sbjct: 310 KQCSNLDMIYFKMLCRTIFEQQGFSTFPVDFHSSIVFIMINNREMKTWKSRMKIGLNSLL 369 Query: 359 HIHSDAKLKDLQLVIGVSKSHRGLKHAYAAYQEAVQALSL--YSCYQKSILFYEELGVFQ 416 K K Q V+GV K + H +Y+ A++ + + + + + FYE+L +++ Sbjct: 370 ESDYIQKKKLPQFVVGVGKFIENVSHMDKSYRTALETIKIQHHLGGRANSCFYEDLHIYR 429 Query: 417 LLLSLNDGKTLENFIRSYLGPLIDHDSAKGSELLLTLRVYLDHDGSKQIAARNLFIVRQS 476 ++ ++ L + YL P++ +D LL TL+VYL +GSK+ A+ LF+VRQ+ Sbjct: 430 IISLIHKYNDLYEVVMEYLEPVLQYDEKYNGNLLETLKVYLACNGSKKETAQRLFVVRQT 489 Query: 477 LYYRLDKITELLGEDFMLPENRISIQVALRAYQLLYPE 514 LY+R+ K+ LLGEDFM PE R++I+ ++AY+ L+ + Sbjct: 490 LYHRIQKLESLLGEDFMNPEKRLAIEFMIKAYEYLHSQ 527 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,966,810,749 Number of extensions: 121140121 Number of successful extensions: 268903 Number of sequences better than 1.0e-05: 354 Number of HSP's gapped: 268936 Number of HSP's successfully gapped: 394 Length of query: 526 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 385 Effective length of database: 1,732,333,088 Effective search space: 666948238880 Effective search space used: 666948238880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)