BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0015.p (365 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6LUT1.1 A6LUT1_CLOB8 NMT1/THI5-like protein 338 4e-91 B1DD89.1 B1DD89_9BACL NMT1/THI5 like domain protein 333 1e-89 Q92K04.1 Q92K04_RHIME Putative uracil and uridine ABC transporte... 246 2e-63 A6UC25.1 A6UC25_SINMW NMT1/THI5 like domain protein 243 2e-62 C3MGH4.1 C3MGH4_RHISN ABC-type nitrate/sulfonate/bicarbonate tra... 243 2e-62 >A6LUT1.1 A6LUT1_CLOB8 NMT1/THI5-like protein Length = 353 Score = 338 bits (868), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 167/306 (54%), Positives = 216/306 (70%), Gaps = 4/306 (1%) Query: 62 VKLQLKWVPQAQFAGYFLAQDKGYYAEEGLKVEILPGGPDIVPEQQVAGGSADIGVDWVA 121 V LQLKW+PQ+QF GY++A KGYY +EG+ ++ILPGG DI+PEQ V G A+IGV WV+ Sbjct: 50 VTLQLKWLPQSQFMGYYVAAAKGYYKDEGIDIQILPGGSDIIPEQNVYNGVANIGVTWVS 109 Query: 122 SLLTSQEQEMPLVQIAQIFQKSGLVLVSKKDAGIAGPAGLKGKKVGNWMGGNEFEILALF 181 SL+T Q Q L +IAQ+FQKSG++LVSKK+ GI P L GKKVGNW GGNE+E+LAL Sbjct: 110 SLMTYQAQGYDLQEIAQVFQKSGMLLVSKKEKGINSPKDLAGKKVGNWFGGNEYELLALL 169 Query: 182 DKYKLDSNKDLNFTKQGFTMDQFLGGEIDAASAMTYNEYQVILESGVKAEDLNVIDMNDE 241 KY LD KDL +Q FTMDQ G +DAASAMTYNE+ ++LE G+K EDLNVIDMN+E Sbjct: 170 SKYNLDKEKDLKLVQQDFTMDQLKEGSVDAASAMTYNEFGLLLEGGMKKEDLNVIDMNNE 229 Query: 242 GVAMLEDNLFANKEWLEANKETAAKFVRASLKGWKDAIADPEAAVDSVMKLAEEGSTTRE 301 VAM+ED LF N EW NK+ +F++AS+KGWKDA+ DPEAA +V + + S + + Sbjct: 230 SVAMMEDCLFVNSEWAGKNKDLLVRFLKASIKGWKDAVQDPEAAGKTVYDV--DKSVSLD 287 Query: 302 HQLTMMTEVAKLIQPEGFDASRLGYTDAAAFQQTADIALKFG--VIKTASKTDEAYTNEI 359 HQ+ M EVAKL+ P+GFD S++G D A +QT D + + KT D +T++ Sbjct: 288 HQVYMAKEVAKLVAPQGFDTSKIGQIDMNAIKQTGDFLKLYNKDLAKTPVVDDTTFTSKY 347 Query: 360 VEMAAK 365 E A K Sbjct: 348 WEEATK 353 >B1DD89.1 B1DD89_9BACL NMT1/THI5 like domain protein Length = 352 Score = 333 bits (855), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 165/304 (54%), Positives = 214/304 (70%) Query: 62 VKLQLKWVPQAQFAGYFLAQDKGYYAEEGLKVEILPGGPDIVPEQQVAGGSADIGVDWVA 121 VK+QLKWVPQAQFAG F+A++KG+Y +EGL VEI+PGGPD+V EQQV G+ADIGV Sbjct: 48 VKIQLKWVPQAQFAGIFVAKEKGFYEQEGLDVEIVPGGPDVVIEQQVVNGAADIGVTSFD 107 Query: 122 SLLTSQEQEMPLVQIAQIFQKSGLVLVSKKDAGIAGPAGLKGKKVGNWMGGNEFEILALF 181 SLL +++ +PLV +AQI QKS V+ K +GI PA +KGKKVG W G +F++LA Sbjct: 108 SLLVNRDNGLPLVSVAQILQKSSYRFVADKASGIDAPAKMKGKKVGMWTGSQQFQVLAFM 167 Query: 182 DKYKLDSNKDLNFTKQGFTMDQFLGGEIDAASAMTYNEYQVILESGVKAEDLNVIDMNDE 241 +K LD KD+ KQGFTMDQF ++D A + YNEY V+LESGVK EDL V D D Sbjct: 168 EKNGLDPQKDVELVKQGFTMDQFFNKQLDVAISTIYNEYHVVLESGVKPEDLYVYDFEDA 227 Query: 242 GVAMLEDNLFANKEWLEANKETAAKFVRASLKGWKDAIADPEAAVDSVMKLAEEGSTTRE 301 GV MLED L ++WL+ N++TA K +RA++KGW AIA+ E AVD VMK EGSTT+E Sbjct: 228 GVGMLEDTLVVKEDWLKNNRDTAVKAIRATMKGWNYAIANQEEAVDIVMKAVTEGSTTKE 287 Query: 302 HQLTMMTEVAKLIQPEGFDASRLGYTDAAAFQQTADIALKFGVIKTASKTDEAYTNEIVE 361 HQ TM+ E+AKL++PEGF +++G A Q+T DI+LK+G+IK A +A I+ Sbjct: 288 HQSTMLMEMAKLVKPEGFTDAQVGSFVDDAVQRTVDISLKYGLIKAAPDLSKAIDKTILA 347 Query: 362 MAAK 365 A K Sbjct: 348 DAEK 351 >Q92K04.1 Q92K04_RHIME Putative uracil and uridine ABC transporter, ATP-binding component Length = 330 Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 141/310 (45%), Positives = 190/310 (61%), Gaps = 12/310 (3%) Query: 62 VKLQLKWVPQAQFAGYFLAQDKGYYAEEGLKVEILPGGPDIVPEQQVAGGSADIGVDWVA 121 V LQLKWV QAQFAGY++A+DKG+Y EEGL VEI PGGPDI P Q +AGG AD+ VDW+ Sbjct: 27 VTLQLKWVTQAQFAGYYVAKDKGFYEEEGLDVEIKPGGPDIAPAQVIAGGGADVIVDWMP 86 Query: 122 SLLTSQEQEMPLVQIAQIFQKSGLVLVSKKDAGIAGPAGLKGKKVGNWMGGNEFEILALF 181 S L ++E+ +PLV IAQ F+ SG++L K++G+ GP KGK +G W GNE+ L+ Sbjct: 87 SALATREKGVPLVNIAQPFKTSGMMLTCLKESGVKGPEDFKGKTLGVWFFGNEYPFLSWM 146 Query: 182 DKYKL--DSNKD-LNFTKQGFTMDQFLGGEIDAASAMTYNEYQVILESGVKAEDLNVIDM 238 K+ D D + KQGF +D + + S MTYNEY ++++G+K EDL Sbjct: 147 SHLKIPTDGGPDGVTVLKQGFNVDPLIQKQAACISTMTYNEYWQVIDAGIKPEDLVTFKY 206 Query: 239 NDEGVAMLEDNLFANKEWL--EANKETAAKFVRASLKGWKDAIADPEAAVDSVMKLAEEG 296 D+GVA LED L+ ++ L EA K+ KFVRAS+KGWK A +P+ A D V++ G Sbjct: 207 EDQGVATLEDGLYVLEDKLKDEAFKDKMVKFVRASMKGWKFAEENPDEAADIVLENDSTG 266 Query: 297 STTREHQLTMMTEVAKLIQPEGFDASRLGYTDAAAFQQTADIALKFGVIKTASKTDE-AY 355 + T +HQ MM EVAKL A G D A +++T L G SK E A+ Sbjct: 267 AQTEKHQKRMMGEVAKLT------AGSSGALDEADYKRTVQSLLAGGSDPVISKEPEGAW 320 Query: 356 TNEIVEMAAK 365 T++I + A K Sbjct: 321 THDITDAALK 330 >A6UC25.1 A6UC25_SINMW NMT1/THI5 like domain protein Length = 330 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 138/308 (44%), Positives = 188/308 (61%), Gaps = 12/308 (3%) Query: 62 VKLQLKWVPQAQFAGYFLAQDKGYYAEEGLKVEILPGGPDIVPEQQVAGGSADIGVDWVA 121 V LQLKWV QAQFAGY++A+DKG+Y EE L VEI PGGPDI P Q +AGG AD+ VDW+ Sbjct: 27 VTLQLKWVTQAQFAGYYVAKDKGFYEEEDLDVEIKPGGPDIAPAQVIAGGGADVIVDWMP 86 Query: 122 SLLTSQEQEMPLVQIAQIFQKSGLVLVSKKDAGIAGPAGLKGKKVGNWMGGNEFEILALF 181 S L ++E+ +PLV IAQ F+KSG++L K++G+ P KGK +G W GNE+ L+ Sbjct: 87 SALATREKGVPLVNIAQPFKKSGMMLTCLKESGVKSPEDFKGKTLGVWFFGNEYPFLSWM 146 Query: 182 DKYKLDSN---KDLNFTKQGFTMDQFLGGEIDAASAMTYNEYQVILESGVKAEDLNVIDM 238 K+ ++ + KQGF +D + + S MTYNEY ++++G+K EDL Sbjct: 147 AHLKIPTDGGADGVTVLKQGFNVDPLIQKQAACISTMTYNEYWQVIDAGIKPEDLVTFQY 206 Query: 239 NDEGVAMLEDNLFANKEWL--EANKETAAKFVRASLKGWKDAIADPEAAVDSVMKLAEEG 296 D+GVA LED L+ ++ L EA K+ KFVRAS+KGWK A +P+ A D V++ G Sbjct: 207 EDQGVATLEDGLYVLEDKLKDEAFKDKMVKFVRASMKGWKYAEENPDEAADIVLENDSTG 266 Query: 297 STTREHQLTMMTEVAKLIQPEGFDASRLGYTDAAAFQQTADIALKFGVIKTASKTDE-AY 355 + T +HQ MM EVAKL A G D A +++T L G SK E A+ Sbjct: 267 AQTEKHQKRMMGEVAKLT------AGSNGALDEADYKRTVQSLLAGGSDPVISKEPEGAW 320 Query: 356 TNEIVEMA 363 T+EI + A Sbjct: 321 THEITDAA 328 >C3MGH4.1 C3MGH4_RHISN ABC-type nitrate/sulfonate/bicarbonate transportsystems periplasmic components-like protein Length = 330 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 138/310 (44%), Positives = 189/310 (60%), Gaps = 12/310 (3%) Query: 62 VKLQLKWVPQAQFAGYFLAQDKGYYAEEGLKVEILPGGPDIVPEQQVAGGSADIGVDWVA 121 V LQLKWV QAQFAGY++A+DKG+Y EEGL VEI PGGPDI P Q +AGG AD+ VDW+ Sbjct: 27 VTLQLKWVTQAQFAGYYVAKDKGFYEEEGLDVEIKPGGPDIAPAQVIAGGGADVIVDWMP 86 Query: 122 SLLTSQEQEMPLVQIAQIFQKSGLVLVSKKDAGIAGPAGLKGKKVGNWMGGNEFEILALF 181 S L ++E+ + LV IAQ F+KSG++L K++G+ P KGK +G W GNE+ L+ Sbjct: 87 SALATREKGVALVNIAQPFKKSGMMLTCLKESGVKSPEDFKGKTLGVWFFGNEYPFLSWM 146 Query: 182 DKYKLDSNKDLN---FTKQGFTMDQFLGGEIDAASAMTYNEYQVILESGVKAEDLNVIDM 238 K+ ++ N KQGF +D + + S MTYNEY ++++G+K EDL Sbjct: 147 SHLKIPTDGGPNGVTVLKQGFNVDPLIQKQAACISTMTYNEYWQVIDAGIKPEDLVTFKY 206 Query: 239 NDEGVAMLEDNLFANKEWLE--ANKETAAKFVRASLKGWKDAIADPEAAVDSVMKLAEEG 296 D+GVA LED L+ ++ L+ A KE KFVRAS+KGWK A +P+ A D V++ G Sbjct: 207 EDQGVATLEDGLYVLEDKLKDPAFKERMVKFVRASMKGWKYAEENPDEAADLVLENDSTG 266 Query: 297 STTREHQLTMMTEVAKLIQPEGFDASRLGYTDAAAFQQTADIALKFGVIKTASKTDE-AY 355 + T +HQ MM E+AKL A G D A F++T L G SK E A+ Sbjct: 267 AQTEKHQKRMMGEIAKLT------AGSNGALDEADFKRTVQSLLAGGSDPVISKEPEGAW 320 Query: 356 TNEIVEMAAK 365 T+++ + A K Sbjct: 321 THDVTDAALK 330 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.132 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,862,458,471 Number of extensions: 73506189 Number of successful extensions: 198136 Number of sequences better than 1.0e-05: 837 Number of HSP's gapped: 197475 Number of HSP's successfully gapped: 838 Length of query: 365 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 228 Effective length of database: 1,770,017,148 Effective search space: 403563909744 Effective search space used: 403563909744 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)