BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0014.p (123 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DD90.1 B1DD90_9BACL Binding-protein-dependent transport system... 151 1e-35 C1XJA3.1 C1XJA3_MEIRU ABC-type nitrate/sulfonate/bicarbonate tra... 114 3e-24 C1XQK3.1 C1XQK3_9DEIN ABC-type nitrate/sulfonate/bicarbonate tra... 104 3e-21 A6LUT0.1 A6LUT0_CLOB8 Binding-protein-dependent transport system... 99 1e-19 A6E1U7.1 A6E1U7_9RHOB Binding-protein-dependent transport system... 97 6e-19 >B1DD90.1 B1DD90_9BACL Binding-protein-dependent transport systems inner membrane component Length = 298 Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 68/122 (55%), Positives = 95/122 (77%) Query: 1 MAAMAINAYKGMTAVDPLALDLMHSYAAGKPAVFRYLRIQNSLPYVFTALKINTTASMIG 60 MA MA++AYKG+ +V+P L+LMH+YAAG+ +F LR + +LP +FTALKIN +IG Sbjct: 174 MATMAVSAYKGLRSVEPAYLELMHAYAAGRFVIFLKLRFKLALPAIFTALKINMATGIIG 233 Query: 61 AIVGEFFFSSRGLGYLLSNSIKVAKMPLGWSCIVLAAIAGVIFYLMVERLEKVFIKWHSS 120 AIVGEFF SSRGLG+LLS+ IK+ MP+ WSCIV+AA+ G+ Y +++ LE++ I WH++ Sbjct: 234 AIVGEFFISSRGLGFLLSDQIKLGNMPIAWSCIVIAAVLGIALYYLIQLLERIAIPWHAA 293 Query: 121 RR 122 RR Sbjct: 294 RR 295 >C1XJA3.1 C1XJA3_MEIRU ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 314 Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 55/120 (45%), Positives = 83/120 (69%), Gaps = 1/120 (0%) Query: 4 MAINAYKGMTAVDPLALDLMHSYAAGKPAVFRYLRIQNSLPYVFTALKINTTASMIGAIV 63 M +N ++G+T V PL+LDLM SYAAG+ +R+LR+ N+LP++F ALK+ TT +MIGAIV Sbjct: 195 MVVNTFRGLTEVSPLSLDLMRSYAAGEVQQYRWLRLPNALPFIFNALKLGTTLAMIGAIV 254 Query: 64 GEFFFSS-RGLGYLLSNSIKVAKMPLGWSCIVLAAIAGVIFYLMVERLEKVFIKWHSSRR 122 GEFF ++ +GLG+ + + WS I++A++ G+ +Y +V LE+ F WH S R Sbjct: 255 GEFFGANGQGLGFRIQIEAGRFGFDIVWSAIIVASVIGIAWYGLVAWLERRFTGWHVSFR 314 >C1XQK3.1 C1XQK3_9DEIN ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 328 Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 51/120 (42%), Positives = 79/120 (65%), Gaps = 1/120 (0%) Query: 4 MAINAYKGMTAVDPLALDLMHSYAAGKPAVFRYLRIQNSLPYVFTALKINTTASMIGAIV 63 + +N ++G+T V PL+LDLM SYAA + + LRI N+LP++F ALK+ TT +MIGAIV Sbjct: 208 VVVNTFRGLTEVSPLSLDLMRSYAASEAQQYLSLRIPNALPFIFNALKLGTTLAMIGAIV 267 Query: 64 GEFFFS-SRGLGYLLSNSIKVAKMPLGWSCIVLAAIAGVIFYLMVERLEKVFIKWHSSRR 122 GEFF + +GLG+ + + W+ I++A++ G+++Y +V LE+ WH S R Sbjct: 268 GEFFGAGGQGLGFRIQIEAGRFGFDIVWAAIIVASLVGILWYNLVAWLERKITSWHVSFR 327 >A6LUT0.1 A6LUT0_CLOB8 Binding-protein-dependent transport systems inner membrane component Length = 255 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/123 (44%), Positives = 88/123 (71%), Gaps = 1/123 (0%) Query: 1 MAAMAINAYKGMTAVDPLALDLMHSYAAGKPAVFRYLRIQNSLPYVFTALKINTTASMIG 60 MAAMAIN+Y+G+ + P A DL+ SYAA + +F LR+ N LP V TALKIN A+++ Sbjct: 133 MAAMAINSYRGLNDLKPFAKDLLESYAAPEKIIFFKLRLPNCLPSVLTALKINVAAAIMA 192 Query: 61 AIVGEFF-FSSRGLGYLLSNSIKVAKMPLGWSCIVLAAIAGVIFYLMVERLEKVFIKWHS 119 A++ E+F S+ G+G+ + ++++ M +GWS IV+AA+ G++ YL++ +E+ IKWH+ Sbjct: 193 AMISEYFAASTSGIGFGIKDNLRKGMMAMGWSYIVMAALVGIVLYLIILLIERRTIKWHA 252 Query: 120 SRR 122 S+R Sbjct: 253 SQR 255 >A6E1U7.1 A6E1U7_9RHOB Binding-protein-dependent transport systems inner membrane component Length = 281 Score = 96.7 bits (239), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 52/121 (42%), Positives = 75/121 (61%), Gaps = 1/121 (0%) Query: 4 MAINAYKGMTAVDPLALDLMHSYAAGKPAVFRYLRIQNSLPYVFTALKINTTASMIGAIV 63 M +N +G+T D + DLM +YAAG LR+ ++P++F LKI TT ++IGAIV Sbjct: 159 MLVNTVQGLTDTDAMQRDLMRTYAAGYWQTLFKLRLPAAMPFIFNGLKIATTLALIGAIV 218 Query: 64 GEFFFSS-RGLGYLLSNSIKVAKMPLGWSCIVLAAIAGVIFYLMVERLEKVFIKWHSSRR 122 EFF S +G+G+ +S S+ + L W+ IV+AAIAG FY V +EK WH S+R Sbjct: 219 AEFFGSPIKGMGFRISTSVGQLALDLVWAEIVVAAIAGSGFYGAVALVEKAVTFWHPSQR 278 Query: 123 A 123 + Sbjct: 279 S 279 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.137 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 634,276,161 Number of extensions: 22021920 Number of successful extensions: 96548 Number of sequences better than 1.0e-05: 935 Number of HSP's gapped: 96498 Number of HSP's successfully gapped: 938 Length of query: 123 Length of database: 3,060,696,203 Length adjustment: 89 Effective length of query: 34 Effective length of database: 2,222,225,868 Effective search space: 75555679512 Effective search space used: 75555679512 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 125 (52.8 bits)