BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0013.p
         (181 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DD90.1 B1DD90_9BACL Binding-protein-dependent transport system...   106   7e-22
A6LUT0.1 A6LUT0_CLOB8 Binding-protein-dependent transport system...   100   1e-19
B0MP48.1 B0MP48_9FIRM Putative uncharacterized protein                 80   5e-14
A8IA09.1 A8IA09_AZOC5 ABC transporter permease protein                 62   3e-08
Q6AQZ4.1 Q6AQZ4_DESPS Probable ABC transporter, permease protein       60   1e-07

>B1DD90.1 B1DD90_9BACL Binding-protein-dependent transport systems inner
           membrane component
          Length = 298

 Score =  106 bits (265), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 79/103 (76%)

Query: 72  FHKLLELKKYQLPLPSAIAEAMRDNFSLLLSYTGYTLAEAVVGMLIGSACGFLIALAATA 131
           FHKL  L+ YQLP+PSAI +A++ N  LL +Y+ YT AE + G LIGSA G L A+AA+ 
Sbjct: 68  FHKLFHLELYQLPIPSAIGKAIQTNRDLLWNYSLYTGAEMIGGCLIGSAIGLLAAIAASF 127

Query: 132 WPRWGGGSLTLVAALNAVPIVALAPIMNLWFGDGIGSRAAIVA 174
             + G G++TLVAALNAVPIVALAP+MN WFGDG+ S+ AIVA
Sbjct: 128 ITQAGKGAITLVAALNAVPIVALAPVMNNWFGDGVASKMAIVA 170


>A6LUT0.1 A6LUT0_CLOB8 Binding-protein-dependent transport systems inner
           membrane component
          Length = 255

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 69/103 (66%)

Query: 71  VFHKLLELKKYQLPLPSAIAEAMRDNFSLLLSYTGYTLAEAVVGMLIGSACGFLIALAAT 130
           + H  L  K +QLP+PS I + + DNFS  L+ T  T++ A+VG+ +G   GF++A+ AT
Sbjct: 26  IIHDALGFKPFQLPVPSQIIKTLSDNFSKALTDTMITVSGALVGLALGCIIGFIVAVIAT 85

Query: 131 AWPRWGGGSLTLVAALNAVPIVALAPIMNLWFGDGIGSRAAIV 173
            +P+WG   L+++AA NA+PIVAL+PIMN WF  G   +  +V
Sbjct: 86  QFPKWGYTGLSVIAAFNAIPIVALSPIMNRWFTSGFAQKVGVV 128


>B0MP48.1 B0MP48_9FIRM Putative uncharacterized protein
          Length = 267

 Score = 80.5 bits (197), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 60/95 (63%)

Query: 70  QVFHKLLELKKYQLPLPSAIAEAMRDNFSLLLSYTGYTLAEAVVGMLIGSACGFLIALAA 129
           +V H L +  +  LPLP+ I   + DNF+ +L     TL  A+ G+++GS  G+ I +A 
Sbjct: 30  KVLHALFKTDEIILPLPTRIGSIIGDNFTNMLPQIASTLIVALGGLVLGSILGYFIGVAG 89

Query: 130 TAWPRWGGGSLTLVAALNAVPIVALAPIMNLWFGD 164
             + +WG G LT+V+A NA+P+VALAP++N W  D
Sbjct: 90  AVFKKWGMGGLTIVSAFNAIPLVALAPVINNWTRD 124


>A8IA09.1 A8IA09_AZOC5 ABC transporter permease protein
          Length = 258

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 4/103 (3%)

Query: 72  FHKLLELKKYQLPLPSAIAEAMRDNFSLLLSYTGYTLAEAVVGMLIGSACGFLIALAATA 131
           FH    L  Y LP  S I  ++    ++LL+  G+TL EA+VG ++G+  G  +A+  T 
Sbjct: 39  FH----LPAYTLPAVSDILASIYAKRAVLLTAAGFTLTEALVGYVLGALIGIGLAIVITL 94

Query: 132 WPRWGGGSLTLVAALNAVPIVALAPIMNLWFGDGIGSRAAIVA 174
            P      L    A+N+VP+VA +P++ LWFG G+GS+  +VA
Sbjct: 95  IPPTRAVLLPAATAINSVPVVAYSPLILLWFGIGMGSKFVMVA 137


>Q6AQZ4.1 Q6AQZ4_DESPS Probable ABC transporter, permease protein
          Length = 248

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 53/93 (56%)

Query: 80  KYQLPLPSAIAEAMRDNFSLLLSYTGYTLAEAVVGMLIGSACGFLIALAATAWPRWGGGS 139
            Y LP P  +  A+ D++S L+ +   TL E + G+L+G+A G   AL  T  P      
Sbjct: 28  HYILPGPLPVFHAIIDHWSTLMGHLQTTLTEIIFGILLGTALGISAALTMTFSPLLKRWL 87

Query: 140 LTLVAALNAVPIVALAPIMNLWFGDGIGSRAAI 172
           L ++    A+P+ ALAPI+ LWFG G+ S+ A+
Sbjct: 88  LPVLVISQAIPVFALAPILVLWFGYGMASKIAM 120


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 965,876,213
Number of extensions: 34357008
Number of successful extensions: 122173
Number of sequences better than 1.0e-05: 172
Number of HSP's gapped: 122669
Number of HSP's successfully gapped: 172
Length of query: 181
Length of database: 3,060,696,203
Length adjustment: 127
Effective length of query: 54
Effective length of database: 1,864,227,298
Effective search space: 100668274092
Effective search space used: 100668274092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)