BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0012.p (269 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DD91.1 B1DD91_9BACL Binding-protein-dependent transport system... 251 4e-65 A6LUS9.1 A6LUS9_CLOB8 Binding-protein-dependent transport system... 203 1e-50 B0MP49.1 B0MP49_9FIRM Putative uncharacterized protein 149 2e-34 B1VT54.1 B1VT54_STRGG Putative ABC transporter permease protein 120 1e-25 Q1M715.1 Q1M715_RHIL3 Putative permease component of ABC transpo... 120 2e-25 >B1DD91.1 B1DD91_9BACL Binding-protein-dependent transport systems inner membrane component Length = 271 Score = 251 bits (642), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 129/254 (50%), Positives = 173/254 (68%) Query: 14 LFVWIFGLLAVWEAVSWWLLHIAKTPLAQSKLPYVHEVAAALWKYSSTLLKEXXXXXXXX 73 L +W+ G L +WEA +W+L IA SKLPY+H V AL K+ STL ++ Sbjct: 15 LAMWVAGALVLWEAAAWYLADIAHVLAPASKLPYLHLVIEALIKHWSTLAEQGAVTFGNS 74 Query: 74 XXXXXXXXXXXXXXXXXMSLSKTVEQLAFPYAVASQMIPILGLAPIIYGIVRDEQASRII 133 MSLS+T+E PY +ASQM+PI+GLAPI+YGI+ D SR++ Sbjct: 75 ILGFLIGTGVGTALAIIMSLSRTIELTLSPYMIASQMVPIIGLAPILYGIIHDPAMSRVL 134 Query: 134 ISGYITFFPVALNMLRGLRSVDLPAVELMRSLAAKPWALYWKLRFPAALPGLFSGLKIAA 193 ++GY+TFFPVA++MLRGL+S+ +LMRS AA W Y KLR A+LPGLF+GLK++A Sbjct: 135 MAGYVTFFPVAIHMLRGLQSIKPEQEDLMRSYAASAWTTYTKLRLMASLPGLFAGLKLSA 194 Query: 194 PLAVTGAILVELMGARHGIGVIMLRNLYYGPSHTYMFWSTVLVGALLGIASYWLMSLVER 253 PLA+T +I+VELMGA +GIGV+ML +LYYG S YMFWST+LV ++G+ + L++L ER Sbjct: 195 PLAITASIIVELMGAPNGIGVLMLSSLYYGSSQVYMFWSTILVSVVIGLIWFLLVTLAER 254 Query: 254 LAAPWQPEFRPKGG 267 L PWQPEFR +GG Sbjct: 255 LLTPWQPEFRSQGG 268 >A6LUS9.1 A6LUS9_CLOB8 Binding-protein-dependent transport systems inner membrane component Length = 258 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 104/254 (40%), Positives = 158/254 (62%), Gaps = 2/254 (0%) Query: 8 RERVLPLFVWIFGLLAVWEAVSWWLLHIAKTPLAQSKLPYVHEVAAALWKYSSTLLKEXX 67 +E+ VW G+ WE V+++L + P+A +KLPY H V ++ + + L+ Sbjct: 5 KEKYKVNLVWAIGIFIAWELVAFFLEQVMHDPMAGAKLPYPHSVIISIAENFTDLMSAAG 64 Query: 68 XXXXXXXXXXXXXXXXXXXXXXXMSLSKTVEQLAFPYAVASQMIPILGLAPIIYGIVRDE 127 MSLSK E+++ PY + SQMIP+LGLAPII+ +VRD Sbjct: 65 LTFSRAVFGFALGAAIGFVLAIIMSLSKIAEKISLPYLIISQMIPVLGLAPIIFTLVRDM 124 Query: 128 QASRIIISGYITFFPVALNMLRGLRSVDLPAVELMRSLAAKPWALYWKLRFPAALPGLFS 187 SRI+I+ YITFFPV++NML GL SV+ EL+ S AAK ++Y+KL P ++P LF+ Sbjct: 125 NTSRIVIAAYITFFPVSVNMLSGLNSVESDKKELLYSYAAKKKSIYYKLMIPYSMPYLFA 184 Query: 188 GLKIAAPLAVTGAILVELMGARHGIGVIMLRNLYYGPSHTYMFWSTVLVGALLGIASYWL 247 GLKIAAP+++T +ILV+++G+ GIGV +L +LY G +FW +V+ AL+GI SY++ Sbjct: 185 GLKIAAPMSITASILVDMLGSSGGIGVKLLYSLYSGTKD--VFWGSVVTSALMGILSYFI 242 Query: 248 MSLVERLAAPWQPE 261 + L E++ PW+ + Sbjct: 243 VILFEKICMPWRKQ 256 >B0MP49.1 B0MP49_9FIRM Putative uncharacterized protein Length = 273 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 138/252 (54%), Gaps = 13/252 (5%) Query: 16 VWIFGLLAVWEAVSWWLLHIAKTPLAQSKLPYVHEVAAALWKYSST----------LLKE 65 VW+ GL+ +WE ++ + +TP+ + LP+++ + + + S + Sbjct: 15 VWVLGLVVIWEICAFIVGATQRTPV--NVLPHLYRIIGSFFDTKSITGSGDTIATLVFSS 72 Query: 66 XXXXXXXXXXXXXXXXXXXXXXXXXMSLSKTVEQLAFPYAVASQMIPILGLAPIIYGIVR 125 M LS VE++AFPY + QMIPILG+API+ I Sbjct: 73 AAETLSRALIGFIIGMVLGYILALLMHLSHIVEKIAFPYLMIIQMIPILGMAPIVLSITG 132 Query: 126 DEQASRIIISGYITFFPVALNMLRGLRSVDLPAVELMRSLAAKPWALYWKLRFPAALPGL 185 D ++RIII+ +TF+PV+ N L G +SV ELMRS A + LY K+ P+A+ Sbjct: 133 DISSARIIIAAILTFYPVSTNTLAGFKSVGRERHELMRSYGASKFQLYTKMLIPSAMSYF 192 Query: 186 FSGLKIAAPLAVTGAILVELMGARHGIGVIMLRNLYYGPSHTYMFWSTVLVGALLGIASY 245 F+GLKI+AP+A+T +ILV+ + +G+G ++ ++L G ++FW V+ A++G+ S+ Sbjct: 193 FTGLKISAPMAITASILVDTLQGGNGLGCMLSQSL-KGSMTRFVFWDIVIFSAVIGVLSF 251 Query: 246 WLMSLVERLAAP 257 +LM ++ER P Sbjct: 252 YLMGVIERAITP 263 >B1VT54.1 B1VT54_STRGG Putative ABC transporter permease protein Length = 287 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 67/180 (37%), Positives = 112/180 (62%), Gaps = 12/180 (6%) Query: 94 SKTVEQLAFPYAVASQMIPILGLAPII-----YGIVRDEQASRIIISGYITFFPVALNML 148 S TVE+ +P + +Q++P + +AP+ +GI A +I+I+ I FFPV ++M+ Sbjct: 112 SSTVERTLYPILLFAQVVPKIAIAPLFVVWLGFGI-----APKILIAVLIAFFPVVISMV 166 Query: 149 RGLRSVDLPAVELMRSLAAKPWALYWKLRFPAALPGLFSGLKIAAPLAVTGAILVELMGA 208 GL++VD ++L ++ AKPW + K+RFPA+LP LFSGLK+A LAVTGA++ E +GA Sbjct: 167 TGLKAVDPEMLQLSATMGAKPWQTFVKIRFPASLPHLFSGLKVAVTLAVTGAVVGEFVGA 226 Query: 209 RHGIGVIMLRNLYYGPSHTYMFWSTVLVGALLGIASYWLMSLVERLAAPWQPEFRPKGGS 268 G+G ++L+ G T M ++ +LV +L+G+ + ++ + E+L PW R + Sbjct: 227 NEGLGYVILQA--NGNLDTPMLFAGLLVMSLIGVVLFVVVEIAEKLLLPWHASRRESSAT 284 >Q1M715.1 Q1M715_RHIL3 Putative permease component of ABC transporter Length = 275 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 131/252 (51%), Gaps = 8/252 (3%) Query: 9 ERVLPLFVWIFGLLAVWEAVSWWLLHIAKTPLAQSKLPYVHEVAAALWKYSSTLLKEXXX 68 R LP + GL+ +W+ V W I K P + P +V A ++TL + Sbjct: 28 SRNLPAILAGLGLVVLWQVVIW----IFKIPTFMAPSP--ADVVLAFRDNAATLWRNFLP 81 Query: 69 XXXXXXXXXXXXXXXXXXXXXXMSLSKTVEQLAFPYAVASQMIPILGLAPIIYGIVRDEQ 128 S T E+ +P AV + IPI+ LAPI+ I + Sbjct: 82 TLLEATLGFLFGNLVAILLAVWFVHSTTAEKAFYPIAVFIKAIPIIALAPILVLIFGNGL 141 Query: 129 ASRIIISGYITFFPVALNMLRGLRSVDLPAVELMRSLAAKPWALYWKLRFPAALPGLFSG 188 A +III+G I FFP +NM++GLR+ ++LMR L+A + WK+RFP++LP LF+ Sbjct: 142 APKIIIAGLICFFPTLVNMVQGLRAASPAMLDLMRVLSATNSEILWKVRFPSSLPFLFAA 201 Query: 189 LKIAAPLAVTGAILVELMGARHGIGVIMLRNLYYGPSHTYMFWSTVLVGALLGIASYWLM 248 LKIAA +V GAI+ E +G+ G+G +++ Y S + ++TV++ ALL + + L+ Sbjct: 202 LKIAATSSVMGAIVAEWIGSSFGLGALIIEATYNFRSP--LLYATVVIAALLAVVLFALV 259 Query: 249 SLVERLAAPWQP 260 S+VE W+P Sbjct: 260 SVVEAKVVRWKP 271 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.139 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,445,136,445 Number of extensions: 52816450 Number of successful extensions: 226515 Number of sequences better than 1.0e-05: 2066 Number of HSP's gapped: 225726 Number of HSP's successfully gapped: 2077 Length of query: 269 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 136 Effective length of database: 1,807,701,208 Effective search space: 245847364288 Effective search space used: 245847364288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)