BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0011.p
         (101 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B0MP50.1 B0MP50_9FIRM Putative uncharacterized protein                152   1e-35
A6LUS8.1 A6LUS8_CLOB8 ABC transporter related                         150   4e-35
B9NT77.1 B9NT77_9RHOB Aliphatic sulfonates import ATP-binding pr...   124   4e-27
Q0FIW0.1 Q0FIW0_9RHOB ABC transporter, ATP-binding protein            123   6e-27
B5J2P0.1 B5J2P0_9RHOB ABC transporter, ATP-binding protein            121   2e-26

>B0MP50.1 B0MP50_9FIRM Putative uncharacterized protein
          Length = 260

 Score =  152 bits (384), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 88/101 (87%)

Query: 1   MEPEILLMDEPFSALDEFTRERLNEELLAVWSKVQSTIVFVTHSIPESIFLSDRVFVLSP 60
           ++P+ILLMDEPFSALDEFTRE+LN+++L++W K   T++FVTH+I ES+++SDR+ VLSP
Sbjct: 160 IQPDILLMDEPFSALDEFTREKLNDDVLSIWRKTNKTVLFVTHNISESVYMSDRICVLSP 219

Query: 61  HPGRLSAIVDIPLPRPRTAEMRNSPEFFELVARIRDSFEGV 101
           HPGRLSAIVD+ LPRPR  +MR +PEF  LV ++R+SFEG+
Sbjct: 220 HPGRLSAIVDVNLPRPRVPDMRGTPEFAALVEKVRNSFEGI 260


>A6LUS8.1 A6LUS8_CLOB8 ABC transporter related
          Length = 277

 Score =  150 bits (379), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 87/101 (86%)

Query: 1   MEPEILLMDEPFSALDEFTRERLNEELLAVWSKVQSTIVFVTHSIPESIFLSDRVFVLSP 60
           + PEILLMDEPFSALDEFTRE+L+E+LL +W+K + T+VFVTH+I E++FLSD+V VLSP
Sbjct: 177 INPEILLMDEPFSALDEFTREKLHEDLLEIWTKTKKTVVFVTHNISEAVFLSDKVVVLSP 236

Query: 61  HPGRLSAIVDIPLPRPRTAEMRNSPEFFELVARIRDSFEGV 101
           HPGR+SA++DI +PRPR  E + S +F++ + +IR+SFEGV
Sbjct: 237 HPGRVSAVIDIDIPRPRNMESKQSKQFYDYITKIRNSFEGV 277


>B9NT77.1 B9NT77_9RHOB Aliphatic sulfonates import ATP-binding protein SsuB
          Length = 256

 Score =  124 bits (310), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 76/97 (78%)

Query: 2   EPEILLMDEPFSALDEFTRERLNEELLAVWSKVQSTIVFVTHSIPESIFLSDRVFVLSPH 61
           + EILLMDEPF ALDE  R+ LNE+LLA+W++ + TI FVTHSIPE+++LS R+ V+SP 
Sbjct: 152 DAEILLMDEPFGALDEIVRDHLNEQLLALWARTEKTIGFVTHSIPEAVYLSTRIVVMSPR 211

Query: 62  PGRLSAIVDIPLPRPRTAEMRNSPEFFELVARIRDSF 98
           PGR++ ++D PLPR R  ++R++PEF E+  R+R+  
Sbjct: 212 PGRITDVIDSPLPRERPLDIRDTPEFIEVAHRVREGL 248


>Q0FIW0.1 Q0FIW0_9RHOB ABC transporter, ATP-binding protein
          Length = 267

 Score =  123 bits (308), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 76/97 (78%)

Query: 2   EPEILLMDEPFSALDEFTRERLNEELLAVWSKVQSTIVFVTHSIPESIFLSDRVFVLSPH 61
           E +ILLMDEPF ALDE  R+ LNE+LLA+W++ Q TI FVTHSIPE+++LS ++ V+SP 
Sbjct: 164 EADILLMDEPFGALDEIVRDHLNEQLLALWARTQKTICFVTHSIPEAVYLSTKIVVMSPR 223

Query: 62  PGRLSAIVDIPLPRPRTAEMRNSPEFFELVARIRDSF 98
           PGR++ +++ PLP+ R  ++R++PEF E+  R+R+  
Sbjct: 224 PGRITDVIESPLPKERPLDIRDTPEFLEIAHRVREGL 260


>B5J2P0.1 B5J2P0_9RHOB ABC transporter, ATP-binding protein
          Length = 259

 Score =  121 bits (304), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 75/97 (77%)

Query: 2   EPEILLMDEPFSALDEFTRERLNEELLAVWSKVQSTIVFVTHSIPESIFLSDRVFVLSPH 61
           + +ILLMDEPF ALDE  R+ LNE+LL +W++ + TI FVTHSIPE+++LS ++ V+SP 
Sbjct: 156 DADILLMDEPFGALDEIVRDHLNEQLLKLWARTEKTIGFVTHSIPEAVYLSTKIVVMSPR 215

Query: 62  PGRLSAIVDIPLPRPRTAEMRNSPEFFELVARIRDSF 98
           PGR++ ++D PLP+ R  ++R+SPEF E+  R+RD  
Sbjct: 216 PGRITDVIDSPLPKERPLDIRDSPEFIEIAHRVRDGL 252


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 600,922,080
Number of extensions: 21794766
Number of successful extensions: 149419
Number of sequences better than 1.0e-05: 5367
Number of HSP's gapped: 151889
Number of HSP's successfully gapped: 5390
Length of query: 101
Length of database: 3,060,696,203
Length adjustment: 69
Effective length of query: 32
Effective length of database: 2,410,646,168
Effective search space: 77140677376
Effective search space used: 77140677376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)