BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0010.p
         (154 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6LUS8.1 A6LUS8_CLOB8 ABC transporter related                         176   5e-43
B0MP50.1 B0MP50_9FIRM Putative uncharacterized protein                175   1e-42
A5EP70.1 A5EP70_BRASB Putative ABC transporter, ATP-binding protein   169   9e-41
B1DD92.1 B1DD92_9BACL ABC transporter related                         168   2e-40
B1ZB21.1 B1ZB21_METPB ABC transporter related                         164   3e-39

>A6LUS8.1 A6LUS8_CLOB8 ABC transporter related
          Length = 277

 Score =  176 bits (447), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 80/125 (64%), Positives = 99/125 (79%)

Query: 10  VLALHQVSLDIAKGEFVSLLGPSGCGKTTLLRLMADLLTPTGGDVTVAGKSAREARLAQK 69
           V AL  V+L+I +GEF+SLLGPSGCGKTTLLR++ADLL P+ G V V G+S RE RL +K
Sbjct: 44  VTALKNVNLEIKEGEFISLLGPSGCGKTTLLRIIADLLQPSSGKVIVRGQSPREIRLQKK 103

Query: 70  YGIVFQSPVLYDWRKVRHNITLPLELMGVKKSIREDKALELLDLVGLQGFADKYPWQLSG 129
           YGIVFQ+PVLYDWR VR N+ +P+EL+G+KK  R  +  E+LDLVGL  F   YP++LSG
Sbjct: 104 YGIVFQNPVLYDWRTVRRNVCMPMELLGMKKQDRTSRVTEMLDLVGLTNFGTHYPYELSG 163

Query: 130 GMQQR 134
           GMQQR
Sbjct: 164 GMQQR 168


>B0MP50.1 B0MP50_9FIRM Putative uncharacterized protein
          Length = 260

 Score =  175 bits (443), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/125 (65%), Positives = 100/125 (80%)

Query: 10  VLALHQVSLDIAKGEFVSLLGPSGCGKTTLLRLMADLLTPTGGDVTVAGKSAREARLAQK 69
           V AL  VS+DI KGEF+SLLGPSGCGK+TLLR+++DLLTPT G+VTV GK+ RE RL QK
Sbjct: 27  VQALKNVSIDIQKGEFISLLGPSGCGKSTLLRIVSDLLTPTSGEVTVCGKTPRETRLEQK 86

Query: 70  YGIVFQSPVLYDWRKVRHNITLPLELMGVKKSIREDKALELLDLVGLQGFADKYPWQLSG 129
           +GIVFQ+PVL DWR VR NI LPLE+M V K  +  +  ++L+LVGL+ F + YP QLSG
Sbjct: 87  FGIVFQNPVLLDWRTVRKNIRLPLEMMKVPKEEQASRIEQVLELVGLKEFGNSYPGQLSG 146

Query: 130 GMQQR 134
           GMQQR
Sbjct: 147 GMQQR 151


>A5EP70.1 A5EP70_BRASB Putative ABC transporter, ATP-binding protein
          Length = 261

 Score =  169 bits (427), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 80/134 (59%), Positives = 100/134 (74%)

Query: 1   MRYQTDTADVLALHQVSLDIAKGEFVSLLGPSGCGKTTLLRLMADLLTPTGGDVTVAGKS 60
           + +QT    V AL   +L IAKGEFVS +GPSGCGKTTLLR++ADL  PT G +TV G +
Sbjct: 14  LTFQTGDGPVYALADANLTIAKGEFVSFIGPSGCGKTTLLRVIADLEQPTSGSITVNGLA 73

Query: 61  AREARLAQKYGIVFQSPVLYDWRKVRHNITLPLELMGVKKSIREDKALELLDLVGLQGFA 120
            R+ARL ++YG VFQ+P LY WR V  N+ LPLE+ G+ K+ R ++A + LDLV L GFA
Sbjct: 74  PRDARLKRQYGYVFQAPALYPWRTVEANVMLPLEVFGLPKAERRERARKHLDLVRLSGFA 133

Query: 121 DKYPWQLSGGMQQR 134
           +KYPWQLSGGMQQR
Sbjct: 134 NKYPWQLSGGMQQR 147


>B1DD92.1 B1DD92_9BACL ABC transporter related
          Length = 267

 Score =  168 bits (425), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/126 (61%), Positives = 97/126 (76%)

Query: 9   DVLALHQVSLDIAKGEFVSLLGPSGCGKTTLLRLMADLLTPTGGDVTVAGKSAREARLAQ 68
           +V AL QVS DI + EFVSLLGPSGCGK+TLLRL+ADLL PT G +T+  +  RE RL +
Sbjct: 26  EVTALSQVSFDIRRKEFVSLLGPSGCGKSTLLRLIADLLQPTSGRITIGEEEPREVRLKR 85

Query: 69  KYGIVFQSPVLYDWRKVRHNITLPLELMGVKKSIREDKALELLDLVGLQGFADKYPWQLS 128
           K+GIVFQSP L++WR V+ NI LP+E++G+KKS     +  L+++VGL  F D YPWQLS
Sbjct: 86  KFGIVFQSPTLFEWRTVKDNIELPMEVLGLKKSEYSAISSRLIEMVGLTQFKDHYPWQLS 145

Query: 129 GGMQQR 134
           GGMQQR
Sbjct: 146 GGMQQR 151


>B1ZB21.1 B1ZB21_METPB ABC transporter related
          Length = 289

 Score =  164 bits (415), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 77/134 (57%), Positives = 94/134 (70%)

Query: 1   MRYQTDTADVLALHQVSLDIAKGEFVSLLGPSGCGKTTLLRLMADLLTPTGGDVTVAGKS 60
           + Y T    V AL  V L +A GEFVS +GPSGCGKTTLLR +ADL  PTGG++TV G  
Sbjct: 41  LTYTTADGPVHALSNVDLAVAPGEFVSFIGPSGCGKTTLLRCVADLEQPTGGELTVNGVG 100

Query: 61  AREARLAQKYGIVFQSPVLYDWRKVRHNITLPLELMGVKKSIREDKALELLDLVGLQGFA 120
           A  ARL + YG VFQ+P LY WR +  N+ LPLE+ GV ++ R ++    LDLV L GFA
Sbjct: 101 AEAARLRRDYGFVFQAPALYPWRTIARNVALPLEIFGVPRAERRERVAHYLDLVQLSGFA 160

Query: 121 DKYPWQLSGGMQQR 134
           +K+PWQLSGGMQQR
Sbjct: 161 NKFPWQLSGGMQQR 174


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 931,784,741
Number of extensions: 35960285
Number of successful extensions: 338150
Number of sequences better than 1.0e-05: 48116
Number of HSP's gapped: 303116
Number of HSP's successfully gapped: 48882
Length of query: 154
Length of database: 3,060,696,203
Length adjustment: 116
Effective length of query: 38
Effective length of database: 1,967,858,463
Effective search space: 74778621594
Effective search space used: 74778621594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)