BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0008.p (284 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZDV0.1 C0ZDV0_BREBN Putative uncharacterized protein 315 4e-84 A8FJA0.1 A8FJA0_BACP2 Zn-dependent hydrolase 210 1e-52 B4AK54.1 B4AK54_BACPU Zn-dependent hydrolase 204 7e-51 B1YIG9.1 B1YIG9_EXIS2 Beta-lactamase domain protein 190 1e-46 C4L086.1 C4L086_EXISA Beta-lactamase domain protein 185 3e-45 >C0ZDV0.1 C0ZDV0_BREBN Putative uncharacterized protein Length = 286 Score = 315 bits (806), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 143/280 (51%), Positives = 198/280 (70%), Gaps = 1/280 (0%) Query: 5 FQQLSPHILIMHAEHETDRPVLAAITGDRRTLLMDAGNSPGHAELFRQELAKRGIRVPEL 64 +Q++ HILIMHA H+TDRP+LAAITG+R+TLL+DAGNSP HA LFRQEL + G+R+P+L Sbjct: 4 IEQITEHILIMHASHDTDRPILAAITGERKTLLIDAGNSPAHAALFRQELQRLGVRLPDL 63 Query: 65 LVLTHWHWDHSFGLSAWQAPVIXXXXXXXXXXXXXXRSWSDEDLAELVLAGVLSEESAQH 124 L+LTHWHWDH+FG+S W P I +WSDE + +L +++ + H Sbjct: 64 LILTHWHWDHTFGMSEWDLPTIAQAKTAHSLSKLMGLNWSDEVMEQLCTEKIINASTMAH 123 Query: 125 IRLEYGDARE-ITVMKPDIVFSGNIAIDLGGVTCELSHVGGDHSADSCFLYIREDNVLFL 183 I+ EYG R+ I ++ PDI+F +I IDLGGVTC+++ VGGDHS DSC++Y++ED LFL Sbjct: 124 IKKEYGMNRDLIRIVDPDILFDESITIDLGGVTCQVNLVGGDHSEDSCYVYVKEDQTLFL 183 Query: 184 GDALGPSVYGGPRRYSSTSFLKLLGLAYGYNAQWYVESHGLPLSLAEFRADLAPWERLAR 243 GDALGPSVYGGPR Y+++ FL++L AY A +VESHG PL A F+ +L WE+LA Sbjct: 184 GDALGPSVYGGPRSYTASRFLRVLKQAYQSEAILFVESHGRPLDRAAFQRELRDWEQLAL 243 Query: 244 IVDVFGHNRERVVQELKDYLALEELPAGLLRGVEYFMAGS 283 + + +G NRE++V + +L + ELP +E+FM G+ Sbjct: 244 LTEQYGQNREQIVSAMCTFLQVSELPHEFSEALEWFMVGA 283 >A8FJA0.1 A8FJA0_BACP2 Zn-dependent hydrolase Length = 282 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 108/281 (38%), Positives = 159/281 (56%), Gaps = 2/281 (0%) Query: 3 HQFQQLSPHILIMHAEHETDRPVLAAITGDRRTLLMDAGNSPGHAELFRQELAKRGIRVP 62 H +++S + TDRP+L + G+ +TL++DAGNS HA+ F +E K P Sbjct: 2 HTIKKISKTFSYITPVSRTDRPILGMVEGNNKTLMIDAGNSEDHAKYFIKETLKHENAQP 61 Query: 63 ELLVLTHWHWDHSFGLSAWQAPV-IXXXXXXXXXXXXXXRSWSDEDLAELVLAGVLSEES 121 +L+VLTHWHWDH FGL A V I SWSDE + E V G E Sbjct: 62 DLVVLTHWHWDHIFGLPALSDSVSIASTKTRKEMEKLVPFSWSDEAIDERVREGTEIEFC 121 Query: 122 AQHIRLEYGDAREITVMKPDIVFSGNIAIDLGGVTCELSHVGGDHSADSCFLYIREDNVL 181 A+ I+ EY + R+I V+ PD+ F I IDLGGVTC + HVGGDH+ADS +Y++E+ +L Sbjct: 122 AKAIKEEYQNHRDIQVVLPDMTFDRRIEIDLGGVTCVVQHVGGDHAADSVIVYVKEEKIL 181 Query: 182 FLGDALGPSVYGGPRRYSSTSFLKLLGLAYGYNAQWYVESHGLPLSLAEFRADLAPWERL 241 FLGD++ P +Y ++ L+LL ++A+ Y+ SH P S EFR + + Sbjct: 182 FLGDSIYPKMYAEKVHFTVKEVLRLLDELDAFDAETYIPSHQRPWSKEEFRQETDKLRIM 241 Query: 242 ARIVDVFGHNRERVVQELKDYLALEELPAGLLRGVEYFMAG 282 A+ D+FG +++++ E + Y+ EL L +EYF+ G Sbjct: 242 AKYTDLFGGDQQKITNEYQKYVN-RELKEDELESIEYFVNG 281 >B4AK54.1 B4AK54_BACPU Zn-dependent hydrolase Length = 282 Score = 204 bits (519), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 104/263 (39%), Positives = 150/263 (57%), Gaps = 2/263 (0%) Query: 21 TDRPVLAAITGDRRTLLMDAGNSPGHAELFRQELAKRGIRVPELLVLTHWHWDHSFGLSA 80 TDRP+L + G+ +TL++DAGNS HA F Q+ K P+++VLTHWHWDH FGL A Sbjct: 20 TDRPILGMVVGNNKTLMIDAGNSKDHANYFIQKTLKHENAKPDMVVLTHWHWDHIFGLPA 79 Query: 81 WQAPV-IXXXXXXXXXXXXXXRSWSDEDLAELVLAGVLSEESAQHIRLEYGDAREITVMK 139 V I SWSDE + E V G E A+ I+ EY D R+I V+ Sbjct: 80 LPDTVSIASAKTRMEMEKILPFSWSDEAIDERVREGTEIEFCAKAIKEEYQDHRDIKVVL 139 Query: 140 PDIVFSGNIAIDLGGVTCELSHVGGDHSADSCFLYIREDNVLFLGDALGPSVYGGPRRYS 199 PD+ F + IDLGGVTC + HVGGDH+ADS +Y++E+ +LFLGD + P +Y Y+ Sbjct: 140 PDVTFDHRMEIDLGGVTCVVQHVGGDHAADSVIVYVKEEKILFLGDCIYPKMYAEKVHYT 199 Query: 200 STSFLKLLGLAYGYNAQWYVESHGLPLSLAEFRADLAPWERLARIVDVFGHNRERVVQEL 259 ++LL ++A Y+ SH P + EFR + +A+ D++G +R+R+V E Sbjct: 200 LKEIMRLLDELEAFDADTYIPSHQRPWTKEEFRQEADKLRMIAKYTDLYGGDRQRIVSEY 259 Query: 260 KDYLALEELPAGLLRGVEYFMAG 282 + +L EL + + YF+ G Sbjct: 260 QAHLN-RELKEDEVETIAYFVNG 281 >B1YIG9.1 B1YIG9_EXIS2 Beta-lactamase domain protein Length = 283 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 97/233 (41%), Positives = 131/233 (56%) Query: 3 HQFQQLSPHILIMHAEHETDRPVLAAITGDRRTLLMDAGNSPGHAELFRQELAKRGIRVP 62 QF+QL+ I ETDRP++A ITGD R+L++DAGNS HA LF +E+ +G+ P Sbjct: 2 QQFKQLTDRIWYQTPVSETDRPIVAVITGDDRSLVIDAGNSSQHATLFLEEMKNQGLGRP 61 Query: 63 ELLVLTHWHWDHSFGLSAWQAPVIXXXXXXXXXXXXXXRSWSDEDLAELVLAGVLSEESA 122 +L+ LTHWHWDH FG+ P I W+DE L E + G+ A Sbjct: 62 DLVALTHWHWDHIFGIKQMAVPTIATHRTVEEIQKMLDYEWTDEALEERIRQGIEIPFCA 121 Query: 123 QHIRLEYGDAREITVMKPDIVFSGNIAIDLGGVTCELSHVGGDHSADSCFLYIREDNVLF 182 I+LE+G REI V+ P I F+G +AIDLGGVTC L V DHS S +YI E+ VLF Sbjct: 122 DAIKLEFGKDREIEVILPTIRFTGELAIDLGGVTCLLRQVENDHSPGSALVYIPEERVLF 181 Query: 183 LGDALGPSVYGGPRRYSSTSFLKLLGLAYGYNAQWYVESHGLPLSLAEFRADL 235 LGDA+ ++ Y+ +LL Y A +YV SHG ++ F ++ Sbjct: 182 LGDAMYADIFSDKWNYTVNQTTRLLDTIAEYEADYYVWSHGEAMAKDAFEQEV 234 >C4L086.1 C4L086_EXISA Beta-lactamase domain protein Length = 285 Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 101/238 (42%), Positives = 134/238 (56%), Gaps = 1/238 (0%) Query: 21 TDRPVLAAITGDRRTLLMDAGNSPGHAELFRQELAKRGIRVPELLVLTHWHWDHSFGLSA 80 TDRP+L A+ GD TLL+DAGNS HA F ++L K+G+R P ++ LTHWHWDH FGL A Sbjct: 20 TDRPILGAVVGDTHTLLIDAGNSVSHASFFLEQLEKQGLRAPSMVALTHWHWDHIFGLPA 79 Query: 81 WQAPV-IXXXXXXXXXXXXXXRSWSDEDLAELVLAGVLSEESAQHIRLEYGDAREITVMK 139 + V I +W D L E V G+ E AQ IR EYGD R+I ++ Sbjct: 80 LEGKVSIASEATKQGMEKLVPYAWDDVSLDERVAQGIEIEFCAQAIREEYGDTRDIEIVL 139 Query: 140 PDIVFSGNIAIDLGGVTCELSHVGGDHSADSCFLYIREDNVLFLGDALGPSVYGGPRRYS 199 P + F ++ +DLGGV L HVGGDH+ D+ LY+ E+ VLFLGDAL +Y R + Sbjct: 140 PTLTFQESLTLDLGGVHVVLRHVGGDHAKDAVVLYVVEERVLFLGDALYADIYSPTWRMT 199 Query: 200 STSFLKLLGLAYGYNAQWYVESHGLPLSLAEFRADLAPWERLARIVDVFGHNRERVVQ 257 L+LL + ++AQ V SHG +S F D R+A I F N + + Q Sbjct: 200 PEETLRLLNVLESFDAQQIVWSHGEMVSREAFAEDCLALRRIATISCDFPGNIDGITQ 257 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,711,299,372 Number of extensions: 69082823 Number of successful extensions: 149917 Number of sequences better than 1.0e-05: 110 Number of HSP's gapped: 149823 Number of HSP's successfully gapped: 111 Length of query: 284 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 150 Effective length of database: 1,798,280,193 Effective search space: 269742028950 Effective search space used: 269742028950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)