BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0007.p (280 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2B1R1.1 Q2B1R1_9BACI Putative uncharacterized protein 352 2e-95 O32135.2 O32135_BACSU Putative uncharacterized protein yunF 337 9e-91 A4ISH6.1 A4ISH6_GEOTN Putative uncharacterized protein 336 1e-90 Q8ET65.1 Q8ET65_OCEIH Hypothetical conserved protein 334 4e-90 B4BMX7.1 B4BMX7_9BACI Putative uncharacterized protein 334 5e-90 >Q2B1R1.1 Q2B1R1_9BACI Putative uncharacterized protein Length = 281 Score = 352 bits (904), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 163/282 (57%), Positives = 215/282 (76%), Gaps = 3/282 (1%) Query: 1 MIKIGLTGFGDHEELYGK-IKPAERLPVYSAHFPIVEIDSSFYAVQPVRNYAKWAEQTPE 59 MI IGLTG+GDH+ LY K I P ++L Y+A+FPIVE+D+SFYAVQP+RN KW E+TP+ Sbjct: 1 MINIGLTGWGDHDSLYKKGISPRDKLKEYAAYFPIVEVDASFYAVQPLRNAHKWTEETPD 60 Query: 60 GFQFIVKAYQGMTGHLRSKKNYFDTPEEMYQAFHASIEPVRSAGKLAMVLFQFPPWFDCT 119 GF+FIVKAYQGMTGH R + FD+ EEM+ AF S++P + KL M LFQFPPWFDC Sbjct: 61 GFEFIVKAYQGMTGHQRGEIP-FDSKEEMFTAFKESLQPYIAKDKLCMALFQFPPWFDCR 119 Query: 120 KDNVEFLREAKERIQDVPSAVEFRNESWYSPEMRGKTLHFLEQEGWIHTVADEPQAGSGS 179 ++NV++LR K+++ D+P A+EFRN++W+ PEM+ KTL F+EQE WIH++ DEPQ+G GS Sbjct: 120 RENVDYLRWCKDQMDDIPCALEFRNQTWFYPEMKDKTLRFMEQEEWIHSICDEPQSGEGS 179 Query: 180 IPIVPVSTGTDATYVRLHGRNISGWNQSSHPDWRKLRYLYRYSTEELTEWRDRLLELEKT 239 +P V ST VR HGRN+ GW + + +WR++RYLYRY+ EEL+ W L ELEK+ Sbjct: 180 VPTVMESTHPGKVLVRFHGRNVHGWQKKNAENWREVRYLYRYNEEELSGWAPALRELEKS 239 Query: 240 CRELYVVFNNNSGGDATDNAKELQSLLGID-GGLAPRQLDFF 280 +++Y VFNNNSGGDA DNA +L ++GI+ GLAPRQLD F Sbjct: 240 TKKVYAVFNNNSGGDAADNALQLVDMMGIEYTGLAPRQLDLF 281 >O32135.2 O32135_BACSU Putative uncharacterized protein yunF Length = 282 Score = 337 bits (863), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 159/283 (56%), Positives = 207/283 (73%), Gaps = 4/283 (1%) Query: 1 MIKIGLTGFGDHEELYG-KIKPAERLPVYSAHFPIVEIDSSFYAVQPVRNYAKWAEQTPE 59 MI IGLTG+GDH+ +Y K ++L YS+HFPIVE+D+SFYA+QP RN KW ++TPE Sbjct: 1 MIYIGLTGWGDHDSIYPPKTASQKKLQAYSSHFPIVELDASFYAIQPARNNEKWVKETPE 60 Query: 60 GFQFIVKAYQGMTGHLRSKKNYFDTPEEMYQAFHASIEPVRSAGKLAMVLFQFPPWFDCT 119 FQFIVKAYQGMTGH R + FD+ EEM+ AF S+ P + KLAMVLFQFPPWFDC Sbjct: 61 TFQFIVKAYQGMTGHQRGEIP-FDSKEEMFDAFKVSLTPYLHSNKLAMVLFQFPPWFDCK 119 Query: 120 KDNVEFLREAKERIQDVPSAVEFRNESWYSPEMRGKTLHFLEQEGWIHTVADEPQAGSGS 179 K+NV +LR K ++ D+P A+EFRN SW+SP +TL F++ EGWIH+V DEPQ G GS Sbjct: 120 KENVAYLRWCKHQMGDIPCALEFRNRSWFSPPFYEQTLSFMKAEGWIHSVCDEPQIGEGS 179 Query: 180 IPIVPVSTGTDATYVRLHGRNISGWNQ-SSHPDWRKLRYLYRYSTEELTEWRDRLLELEK 238 +P V +T + T VR HGRN GW + +WR++RYLYRY+ +EL +W+ L EL++ Sbjct: 180 VPTVLRATDENKTLVRFHGRNKQGWMKPDGGKNWREVRYLYRYNQQELEDWKKHLNELQQ 239 Query: 239 TCRELYVVFNNNSGGDATDNAKELQSLLGID-GGLAPRQLDFF 280 C++++V+FNNNSGGDA DN K++ LL I+ GLAPRQLD F Sbjct: 240 QCKDVFVLFNNNSGGDAADNGKQMLELLDIEYSGLAPRQLDLF 282 >A4ISH6.1 A4ISH6_GEOTN Putative uncharacterized protein Length = 284 Score = 336 bits (862), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 164/283 (57%), Positives = 207/283 (73%), Gaps = 4/283 (1%) Query: 1 MIKIGLTGFGDHEELYGK-IKPAERLPVYSAHFPIVEIDSSFYAVQPVRNYAKWAEQTPE 59 MI IGLTG+GDH+ LY + ++LP Y+AHFP VE+DS FYA+QP N KW +TP Sbjct: 3 MIYIGLTGWGDHDSLYPPGLAAKDKLPEYAAHFPTVEVDSYFYAIQPRANVEKWIRETPP 62 Query: 60 GFQFIVKAYQGMTGHLRSKKNYFDTPEEMYQAFHASIEPVRSAGKLAMVLFQFPPWFDCT 119 FQFIVKAYQGMTGH R Y + EEM+ AF SI P + AGKLAMVLFQFPPWFDC Sbjct: 63 SFQFIVKAYQGMTGHERGPIPYANK-EEMFAAFLESIAPFQEAGKLAMVLFQFPPWFDCR 121 Query: 120 KDNVEFLREAKERIQDVPSAVEFRNESWYSPEMRGKTLHFLEQEGWIHTVADEPQAGSGS 179 +++V +LR K R+ VP A+EFR++SW+SP KTL F+E+EGWIH++ DEPQAG GS Sbjct: 122 REHVTYLRWVKARMGAVPVALEFRHQSWFSPRFYDKTLRFMEEEGWIHSICDEPQAGEGS 181 Query: 180 IPIVPVSTGTDATYVRLHGRNISGWNQSSHPD-WRKLRYLYRYSTEELTEWRDRLLELEK 238 +P V T + T +RLHGRN+ GWN+++ D WR +RYLYRY+ EL+EW + + EL++ Sbjct: 182 VPTVLHPTDREKTLIRLHGRNVHGWNKATAGDNWRAVRYLYRYNERELSEWVNHIQELKE 241 Query: 239 TCRELYVVFNNNSGGDATDNAKELQSLLGID-GGLAPRQLDFF 280 +YV+FNNNSGGDA DNAK+L LLGI+ GLAPRQLD F Sbjct: 242 KTTHIYVLFNNNSGGDAADNAKQLIRLLGIEYTGLAPRQLDLF 284 >Q8ET65.1 Q8ET65_OCEIH Hypothetical conserved protein Length = 281 Score = 334 bits (857), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 155/282 (54%), Positives = 211/282 (74%), Gaps = 3/282 (1%) Query: 1 MIKIGLTGFGDHEELY-GKIKPAERLPVYSAHFPIVEIDSSFYAVQPVRNYAKWAEQTPE 59 MI IGLTG+GDH+ LY KP E+L YS+HFPIVE+D+SFYA+QP RN KW ++TPE Sbjct: 1 MIYIGLTGWGDHDTLYTADSKPQEKLQDYSSHFPIVELDASFYAIQPHRNIEKWIKETPE 60 Query: 60 GFQFIVKAYQGMTGHLRSKKNYFDTPEEMYQAFHASIEPVRSAGKLAMVLFQFPPWFDCT 119 FQF+VKAYQGMTGH R + F++ E M++AF S+ P + GKLA VLFQFPPWFDC Sbjct: 61 KFQFVVKAYQGMTGHQRGESP-FESKEAMFEAFKESMIPFQKTGKLATVLFQFPPWFDCK 119 Query: 120 KDNVEFLREAKERIQDVPSAVEFRNESWYSPEMRGKTLHFLEQEGWIHTVADEPQAGSGS 179 K++V+++R K+++ D+ A+EFR++SWYS R +T+ F++ GW+H++ADEPQAG GS Sbjct: 120 KEHVQYIRYCKKQMGDIQVALEFRHQSWYSDSFREQTISFMKDGGWMHSIADEPQAGKGS 179 Query: 180 IPIVPVSTGTDATYVRLHGRNISGWNQSSHPDWRKLRYLYRYSTEELTEWRDRLLELEKT 239 +P VP++T D T +RLHGRN GW +S + +WR++RYLY Y+ EEL + + +L K Sbjct: 180 VPFVPITTHPDTTIIRLHGRNFHGWTRSGNENWREVRYLYDYNKEELLTLANEVTQLNKP 239 Query: 240 CRELYVVFNNNSGGDATDNAKELQSLLGID-GGLAPRQLDFF 280 ++ V+FNNNSGG A +NAK+LQ +LGID GLAP+QLD F Sbjct: 240 NHDVIVLFNNNSGGHAANNAKQLQEMLGIDYQGLAPKQLDLF 281 >B4BMX7.1 B4BMX7_9BACI Putative uncharacterized protein Length = 284 Score = 334 bits (857), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 163/283 (57%), Positives = 206/283 (72%), Gaps = 4/283 (1%) Query: 1 MIKIGLTGFGDHEELYGK-IKPAERLPVYSAHFPIVEIDSSFYAVQPVRNYAKWAEQTPE 59 MI IGLTG+GDH+ LY + ++LP Y+AHFP VE+DS FYA+QP N KW +TP Sbjct: 3 MIYIGLTGWGDHDSLYPPGLAAKDKLPEYAAHFPTVEVDSYFYAIQPRANVEKWIRETPP 62 Query: 60 GFQFIVKAYQGMTGHLRSKKNYFDTPEEMYQAFHASIEPVRSAGKLAMVLFQFPPWFDCT 119 FQFIVKAYQGMTGH R Y + EEM+ AF SI P + AGKLAMVLFQFPPWFDC Sbjct: 63 SFQFIVKAYQGMTGHERGPIPYANK-EEMFAAFLESIAPFQEAGKLAMVLFQFPPWFDCR 121 Query: 120 KDNVEFLREAKERIQDVPSAVEFRNESWYSPEMRGKTLHFLEQEGWIHTVADEPQAGSGS 179 +++V +LR K R+ VP A+EFR++SW+SP KTL F+E+EGWIH++ DEPQAG GS Sbjct: 122 REHVTYLRWVKARMGAVPVALEFRHQSWFSPRFYDKTLRFMEEEGWIHSICDEPQAGEGS 181 Query: 180 IPIVPVSTGTDATYVRLHGRNISGWNQSSHPD-WRKLRYLYRYSTEELTEWRDRLLELEK 238 +P V T + T +RLHGRN+ GWN+++ D WR +RYLYRY+ EL+EW + + L++ Sbjct: 182 VPTVLHPTDREKTLIRLHGRNVHGWNKATAGDNWRAVRYLYRYNERELSEWVNHIQALKE 241 Query: 239 TCRELYVVFNNNSGGDATDNAKELQSLLGID-GGLAPRQLDFF 280 +YV+FNNNSGGDA DNAK+L LLGI+ GLAPRQLD F Sbjct: 242 KTTHIYVLFNNNSGGDAADNAKQLIRLLGIEYTGLAPRQLDLF 284 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,877,147,306 Number of extensions: 82491547 Number of successful extensions: 203930 Number of sequences better than 1.0e-05: 422 Number of HSP's gapped: 203038 Number of HSP's successfully gapped: 422 Length of query: 280 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 146 Effective length of database: 1,798,280,193 Effective search space: 262548908178 Effective search space used: 262548908178 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)