BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0004.p (270 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1PDA1.1 C1PDA1_BACCO ABC transporter related 198 4e-49 C4KZL7.1 C4KZL7_EXISA ABC transporter related 189 2e-46 Q9Z9J3.1 CBIO1_BACHD Cobalt import ATP-binding protein cbiO 1 EC... 188 4e-46 B0TC87.1 B0TC87_HELMI Cobalt import ATP-binding protein cbio 2 182 4e-44 C0ZIK9.1 C0ZIK9_BREBN ABC transporter ATP-binding protein 181 6e-44 >C1PDA1.1 C1PDA1_BACCO ABC transporter related Length = 282 Score = 198 bits (503), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 107/263 (40%), Positives = 163/263 (61%), Gaps = 2/263 (0%) Query: 9 LSFRDGQRRLPVLQGISIHIRRGEWVALTGANGCGKSSLIRTFNGLNIPTGGSLSAAGLD 68 +SFR ++ L IS + +GEW+A+ G NG GKS+L R NGL P G+++ +GL Sbjct: 14 VSFRYPEQETYALTNISFQVYKGEWLAIVGHNGSGKSTLARLLNGLQFPGKGTITVSGLK 73 Query: 69 LRSPANRAAVKRHIQLVFQNPEAQTVGSTPFEDVAFGLENRGLSRSVMLAKIEDVLGQVG 128 L S N ++R + +VFQNP+ Q VG+T +DVAFGLEN G+ R M+ ++ D L +V Sbjct: 74 L-SDENVWEIRRRVGMVFQNPDNQFVGTTVQDDVAFGLENHGVPREEMVKRVHDALKRVR 132 Query: 129 LAHKARADVSTLSGGERQRLAVACCLALDTEMIIFDEVTSMLDPAGRRDILELARQLWAQ 188 ++ + LSGG++QR+A+A +AL E+II DE TSMLDP GR+++LE RQL + Sbjct: 133 MSDFLDREPHHLSGGQKQRVAIAGIIALKPEVIILDEATSMLDPVGRKEVLETIRQLKQE 192 Query: 189 -GTTVLWVTQRMEELAESPRVAVMGQGKMLYDGDPRTLFYASGLPDALDWPAAPVIRIGQ 247 G TV+ +T +EE A++ R+ VM +G++ +G PR +F AL +++ + Sbjct: 193 AGLTVISITHDLEEAAQAERMIVMNRGEVYREGTPRDIFQMDETLTALGLDIPFPVKMAK 252 Query: 248 LLQAKGWPLDSLPLTERELEAAL 270 L+A+G L + LT+ EL AL Sbjct: 253 ALKARGLDLPEIYLTDEELVDAL 275 >C4KZL7.1 C4KZL7_EXISA ABC transporter related Length = 278 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 104/253 (41%), Positives = 157/253 (62%), Gaps = 10/253 (3%) Query: 19 PVLQGISIHIRRGEWVALTGANGCGKSSLIRTFNGLNIPTGGSLSAAGLDLRSPANRAAV 78 P L G+S+ + +GEW+A+ G NG GKS+L + +NGL IP G + LD + A+ V Sbjct: 20 PALNGLSLDVYKGEWLAIVGHNGSGKSTLTKLWNGLLIPEQGEVRVETLDPSNAADVWDV 79 Query: 79 KRHIQLVFQNPEAQTVGSTPFEDVAFGLENRGLSRSVMLAKIEDVLGQVGLAHKARADVS 138 + I +VFQNP+ Q VG+T +DVAF LEN GL R M+ +I+D L +VGL+ A + Sbjct: 80 RTRIGVVFQNPDNQFVGATVRDDVAFSLENMGLPRQEMVRRIDDSLARVGLSELADREPH 139 Query: 139 TLSGGERQRLAVACCLALDTEMIIFDEVTSMLDPAGRRDILELARQLWAQGTTVLWVTQR 198 LSGG++QR+A+A LA+ +++ DE TSMLDP GR+++L+ RQL ++G TV+ +T Sbjct: 140 QLSGGQKQRVAIAAALAMRPRVLVLDEATSMLDPIGRQEVLQTVRQLVSEGMTVVAITHE 199 Query: 199 MEELAESPRVAVMGQGKMLYDGDPRTLFYASGLPDA-----LDWPAAPVIRIGQLLQAKG 253 ++E+ + R+ + +GK+ G P +F PD LD P ++R+ L+A+G Sbjct: 200 LDEVLFADRIIALSKGKIAMTGTPEDVFQD---PDTLRDIQLDVPF--IVRMQLELKARG 254 Query: 254 WPLDSLPLTEREL 266 PLD L L EL Sbjct: 255 IPLDRLMLQHSEL 267 >Q9Z9J3.1 CBIO1_BACHD Cobalt import ATP-binding protein cbiO 1 EC=3.6.3.- Length = 278 Score = 188 bits (478), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 104/265 (39%), Positives = 165/265 (62%), Gaps = 4/265 (1%) Query: 8 TLSFRDGQRRLPVLQGISIHIRRGEWVALTGANGCGKSSLIRTFNGLNIPTGGSLSAAGL 67 ++S++ PVL+ I IH+ GEWVA+ G NG GKS+L + NGL +PT G ++ G+ Sbjct: 9 SVSYQYDANAAPVLKEIDIHVPLGEWVAVIGPNGSGKSTLAKLLNGLLLPTSGRVTFNGM 68 Query: 68 DLRSPANRAAVKRHIQLVFQNPEAQTVGSTPFEDVAFGLENRGLSRSVMLAKIEDVLGQV 127 +++ + LVFQNPE Q V +T +D+AFG+ENRG R M+ +IE+V QV Sbjct: 69 STMDEGTHWEIRQQVGLVFQNPEHQFVATTVRDDLAFGMENRGFPREKMIQRIEEVSIQV 128 Query: 128 GLAHKARADVSTLSGGERQRLAVACCLALDTEMIIFDEVTSMLDPAGRRDILELARQLWA 187 G+ H + LSGG++QR+A+A LA++ +I+FDE TSMLDP GR+D+LE +QL Sbjct: 129 GIDHLLDEEPHRLSGGQKQRVAIAGILAVEPSVIVFDEATSMLDPQGRKDVLETMKQLHE 188 Query: 188 QGTTVLWVTQRMEELAESPRVAVMGQGKMLYDGDPRTLFYASGLPDA--LDWPAAPVIRI 245 G T++ +T + E +++ RV ++ +G+++ DG P +F+ +A +D P A +++ Sbjct: 189 NGMTIISITHDVNEASQAGRVLLLEKGEVMLDGSPAVVFHEQDKLEAAGIDRPFAYQLQL 248 Query: 246 GQLLQAKGWPLDSLPLTERELEAAL 270 LQ++G L+ L + EL AL Sbjct: 249 A--LQSRGIQLEGALLKKEELVEAL 271 >B0TC87.1 B0TC87_HELMI Cobalt import ATP-binding protein cbio 2 Length = 284 Score = 182 bits (461), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 103/266 (38%), Positives = 154/266 (57%), Gaps = 6/266 (2%) Query: 1 MIRAEHLTLSFR--DGQRRLPVLQGISIHIRRGEWVALTGANGCGKSSLIRTFNGLNIPT 58 +I E+++ +R DG + L +SI IR GEWVA+ GANG GKS+L + N L P Sbjct: 6 LISVENVSFQYRNPDGDA-IQALSNVSITIRSGEWVAVLGANGSGKSTLAKHLNALLTPA 64 Query: 59 GGSLSAAGLDLRSPANRAAVKRHIQLVFQNPEAQTVGSTPFEDVAFGLENRGLSRSVMLA 118 G + GLD + R ++R + +VFQNP+ Q V +T EDVAFG EN GL + Sbjct: 65 EGRVLVDGLDTKDARQRYDIRRRVGMVFQNPDNQLVATTVEEDVAFGPENLGLPSEEIRR 124 Query: 119 KIEDVLGQVGLAHKARADVSTLSGGERQRLAVACCLALDTEMIIFDEVTSMLDPAGRRDI 178 +++ L VGL LSGG++QR+A+A LAL ++FDE TSMLDP RR++ Sbjct: 125 RVDAALAVVGLQSLRERPPHDLSGGQKQRVAIAGALALQPAYLVFDEATSMLDPQSRREV 184 Query: 179 LELARQLWAQ-GTTVLWVTQRMEELAESPRVAVMGQGKMLYDGDPRTLFYASGLPDALDW 237 L+ R+L + TV+ +T M+E AE+ R+ VM QG++++DG P +LF L + Sbjct: 185 LQTVRRLHKELAMTVITITHDMDEAAEAERLVVMSQGRVVFDGLPESLFREESLLEQAGL 244 Query: 238 PAAPVIRIGQLLQAKGW--PLDSLPL 261 P I + L+ +G PL+++ + Sbjct: 245 EPPPSAEIARRLRERGLTIPLEAVTM 270 >C0ZIK9.1 C0ZIK9_BREBN ABC transporter ATP-binding protein Length = 283 Score = 181 bits (459), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 103/258 (39%), Positives = 156/258 (60%), Gaps = 6/258 (2%) Query: 2 IRAEHLTLSFRDGQRRLPVLQGISIHIRRGEWVALTGANGCGKSSLIRTFNGLNIPTGGS 61 +R T DGQR +PVLQG+ + I++G +V++ G NG GKS++ + N L +P GG+ Sbjct: 9 LRDVSYTYDGEDGQR-VPVLQGVDLTIQKGSFVSVLGHNGSGKSTMAKLMNALLLPEGGT 67 Query: 62 LSAAGLDLRSPANRAAVKRHIQLVFQNPEAQTVGSTPFEDVAFGLENRGLSRSVMLAKIE 121 + +G+D + ++RH+ +VFQNP+ Q VG+T +DVAFGLEN G+ M +I+ Sbjct: 68 VLISGMDTKDGEQLWEIRRHVGMVFQNPDNQIVGATVEDDVAFGLENMGVDPKEMRDRID 127 Query: 122 DVLGQVGLAHKARADVSTLSGGERQRLAVACCLALDTEMIIFDEVTSMLDPAGRRDILEL 181 + L VG+ +A LSGG++QR+A+A +A+ +II DE T+MLDP GR ++L L Sbjct: 128 EALVSVGMESYLQAQPHRLSGGQKQRVAIAGIMAMRPSVIILDEATAMLDPQGRMEVLNL 187 Query: 182 ARQL-WAQGTTVLWVTQRMEELAESPRVAVMGQGKMLYDGDPRTLFYASGLPD--ALDWP 238 ARQL +G T++ +T EE S +V VM G++L +G P +F LD P Sbjct: 188 ARQLNRDEGLTIINITHFPEEAIYSDKVIVMNAGEVLMEGKPSEVFNEVDRLKQVGLDVP 247 Query: 239 AAPVIRIGQLLQAKGWPL 256 A +R+ LQ+KG L Sbjct: 248 FA--VRLRHALQSKGIDL 263 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,609,461,811 Number of extensions: 66881545 Number of successful extensions: 437256 Number of sequences better than 1.0e-05: 83520 Number of HSP's gapped: 358086 Number of HSP's successfully gapped: 89789 Length of query: 270 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 137 Effective length of database: 1,807,701,208 Effective search space: 247655065496 Effective search space used: 247655065496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)