BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0003.p (190 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B5YDX3.1 B5YDX3_DICT6 Cobalt import ATP-binding protein CbiO 1 135 2e-30 C1I8Z0.1 C1I8Z0_9CLOT Cobalt transporter ATP-binding subunit 134 5e-30 C4XGV1.1 C4XGV1_9DELT Putative ABC transporter ATP-binding protein 132 2e-29 B1RKE9.1 B1RKE9_CLOPE Cobalt ABC transporter, ATP-binding protein 132 2e-29 B1V791.1 B1V791_CLOPE Cobalt ABC transporter, ATP-binding protein 131 4e-29 >B5YDX3.1 B5YDX3_DICT6 Cobalt import ATP-binding protein CbiO 1 Length = 287 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 74/154 (48%), Positives = 95/154 (61%), Gaps = 7/154 (4%) Query: 18 LTDISLDIREGTLTVLCGVTGSGKSTLLRLLSGLAQPASGTIAFDGGQPPAGK------- 70 LT++SLDI +G + G TGSGKSTL++L+ GL P G I G + Sbjct: 24 LTNVSLDIEQGERIGILGKTGSGKSTLIQLIGGLIYPVVGEIYIKGKEIKKWNSKELCKV 83 Query: 71 VSMVFQQPETQLFAGSVHKELEYGLAERGVPGPQRLELIRSALARVGLPYDEFGRRSPFL 130 V +VFQ PE Q FA +V +E+ +G GVP + + +R AL VGL YDE RSPF Sbjct: 84 VGIVFQYPEYQFFAETVFEEVAFGPRNVGVPEEKIEDCVRGALESVGLSYDELKDRSPFH 143 Query: 131 LSGGEKRRLCIAAAIASAPGLLVLDEPTAGLDPQ 164 LSGGEKRRL IA+ +A P +L+LDEPTA LDP+ Sbjct: 144 LSGGEKRRLAIASILAMDPEVLILDEPTANLDPK 177 >C1I8Z0.1 C1I8Z0_9CLOT Cobalt transporter ATP-binding subunit Length = 286 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 97/156 (62%), Gaps = 9/156 (5%) Query: 18 LTDISLDIREGTLTVLCGVTGSGKSTLLRLLSGLAQPASGTIAFDGGQPPAG-------- 69 L +++++I EG L G TGSGKSTL++ ++GL +P SG I DG Sbjct: 23 LNNVNIEINEGEFVALIGHTGSGKSTLIQHMNGLLKPTSGRIVVDGEDITKDGVKLTDIR 82 Query: 70 -KVSMVFQQPETQLFAGSVHKELEYGLAERGVPGPQRLELIRSALARVGLPYDEFGRRSP 128 KV +VFQ PE QLF ++ K++E+G G+ + + ++ ++ VGL YD + +SP Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIEFGPRNLGLSDDEITKRVKRSMEMVGLDYDTYRNKSP 142 Query: 129 FLLSGGEKRRLCIAAAIASAPGLLVLDEPTAGLDPQ 164 F LSGG+KRR+ IA IA P +L+LDEPTAGLDP+ Sbjct: 143 FDLSGGQKRRVAIAGVIAMEPKVLILDEPTAGLDPK 178 >C4XGV1.1 C4XGV1_9DELT Putative ABC transporter ATP-binding protein Length = 472 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/156 (48%), Positives = 94/156 (60%), Gaps = 3/156 (1%) Query: 8 VSFRYD-KLPVLTDISLDIREGTLTVLCGVTGSGKSTLLRLLSGLAQPASGTIAFDGGQP 66 V F Y PVL + L +R G + L G G+GKST+LRL+ GL +PA G +A G Sbjct: 262 VGFSYSPTAPVLRGLDLAVRPGEVVALLGANGAGKSTVLRLIKGLGKPAVGRVALGAGLT 321 Query: 67 PAGKVSMVFQQPETQLFAGSVHKELEYGLAERGVPGPQRLELIRSALARVGLPYDEFGRR 126 A V ++FQ PE QLFA +V E Y L RGV +RL R+ALA GL D R Sbjct: 322 AASDVGLMFQNPEEQLFAHTVAAECGYWLENRGVAPEERLARCRAALAGFGL--DAMLSR 379 Query: 127 SPFLLSGGEKRRLCIAAAIASAPGLLVLDEPTAGLD 162 +PF LS GEKRRLC+AA + + P +L LDEPT GLD Sbjct: 380 APFSLSFGEKRRLCLAAILVAEPAVLCLDEPTTGLD 415 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 80/171 (46%), Gaps = 13/171 (7%) Query: 3 IQADHVSF--RYDKLPVLTDISLDIREGTLTVLCGVTGSGKSTLLRLLSG-----LAQPA 55 I+ D VSF P L +L I +G + G +GSGKSTL L G LA Sbjct: 2 IELDDVSFVPAGATCPTLAHATLRIGQGERVGIVGPSGSGKSTLGYHLCGAHRLALAGRT 61 Query: 56 SGTIAFDGGQ----PPAGKVSMVFQQPETQLFAGSVHKELEYGLAERGVPGPQRLELIRS 111 G +AF G P G +V Q PE QLF +V+ EL L RG + + Sbjct: 62 DGRLAFAGRDGTDGAPVGFAGLVGQNPEAQLFCRTVYDELALALLARGEDEACCRQTAAT 121 Query: 112 ALARVGLPYDEFGRRSPFLLSGGEKRRLCIAAAIASAPGLLVLDEPTAGLD 162 L + G + E G S LS G+K+ + + +A P +L+LDEPT LD Sbjct: 122 LLGQYG--FAERGEASLGSLSLGQKQLTAVLSMLAMEPRVLLLDEPTNYLD 170 >B1RKE9.1 B1RKE9_CLOPE Cobalt ABC transporter, ATP-binding protein Length = 285 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 95/156 (60%), Gaps = 9/156 (5%) Query: 18 LTDISLDIREGTLTVLCGVTGSGKSTLLRLLSGLAQPASGTIAFDGGQPPAGKVSM---- 73 L +I+ +I++G L G TGSGKST ++ L+GL P SG I DG KV + Sbjct: 23 LNNINCEIKDGEFIALIGHTGSGKSTFIQHLNGLLSPTSGNIIVDGVNIADKKVKLSDIR 82 Query: 74 -----VFQQPETQLFAGSVHKELEYGLAERGVPGPQRLELIRSALARVGLPYDEFGRRSP 128 VFQ PE QLF ++ K++EYG G+ + + ++ ++ VGL Y+ + +SP Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIEYGPRNLGISEEEISKRVKKSMEMVGLDYETYKDKSP 142 Query: 129 FLLSGGEKRRLCIAAAIASAPGLLVLDEPTAGLDPQ 164 F LSGG+KRR+ IA IA P +L+LDEPTAGLDP+ Sbjct: 143 FDLSGGQKRRVAIAGVIAMEPKVLILDEPTAGLDPK 178 >B1V791.1 B1V791_CLOPE Cobalt ABC transporter, ATP-binding protein Length = 285 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 94/156 (60%), Gaps = 9/156 (5%) Query: 18 LTDISLDIREGTLTVLCGVTGSGKSTLLRLLSGLAQPASGTIAFDGGQPPAGKVSM---- 73 L +I+ +I +G L G TGSGKST ++ L+GL P SG I DG KV + Sbjct: 23 LNNINCEIEDGEFVALIGHTGSGKSTFIQHLNGLLSPTSGNIIVDGVNIADKKVKLSDIR 82 Query: 74 -----VFQQPETQLFAGSVHKELEYGLAERGVPGPQRLELIRSALARVGLPYDEFGRRSP 128 VFQ PE QLF ++ K++EYG G+ + + ++ ++ VGL Y+ + +SP Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIEYGPRNLGISEEEISKRVKKSMEMVGLDYETYKDKSP 142 Query: 129 FLLSGGEKRRLCIAAAIASAPGLLVLDEPTAGLDPQ 164 F LSGG+KRR+ IA IA P +L+LDEPTAGLDP+ Sbjct: 143 FDLSGGQKRRVAIAGVIAMEPKVLILDEPTAGLDPK 178 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.140 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,130,002,936 Number of extensions: 47005558 Number of successful extensions: 407306 Number of sequences better than 1.0e-05: 72607 Number of HSP's gapped: 335939 Number of HSP's successfully gapped: 76274 Length of query: 190 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 62 Effective length of database: 1,854,806,283 Effective search space: 114997989546 Effective search space used: 114997989546 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)