BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0176.0009.p (277 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL10.1 B3KL10_9BACI Cytochrome c assembly protein 239 1e-61 B1DDT2.1 B1DDT2_9BACL Cytochrome c assembly protein 135 3e-30 O69103.1 HEMX_BREBE Protein hemX 105 5e-21 Q2B6L1.1 Q2B6L1_9BACI Membrane-bound protein 100 2e-19 Q9K8F9.1 Q9K8F9_BACHD Negative effector of the concentration of ... 100 2e-19 >B3KL10.1 B3KL10_9BACI Cytochrome c assembly protein Length = 276 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 134/274 (48%), Positives = 178/274 (64%), Gaps = 4/274 (1%) Query: 5 QLLNGIYDXXXXXXXXXXXFVFSDCLKRSPXXXXXXXXXXXXXXILQAAGLAVRFSQEQG 64 LLN IY F SDC+ R+ +LQ AG+ +R + E G Sbjct: 1 MLLNIIYITGICIYALSLLFYISDCISRNSVAKRIGTGLLVITALLQFAGIGIR-AMEGG 59 Query: 65 ---LPIFTPYDFLFWFSFIIVLTSLAVAYTRGGEFTILLLSMAGFSVFLLNRVWLTAEDH 121 P+FT +DFLF +F I +TS+A+AY + EF +LL+++ GF V L+NR+W TA D+ Sbjct: 60 HFHFPVFTLFDFLFLLAFCISITSIALAYMKRSEFAVLLINLVGFCVMLVNRLWFTAGDN 119 Query: 122 TLQSWSAVHGWLALHIILANLSFAALTLGTVFAIMYLFLHTRLKHKKWDDRIRRLPSLET 181 L SW H L +HI LA++SFAALT+G VFA +Y+FLH +LKHK+W+D +RRLPSLE Sbjct: 120 ALYSWETEHRLLLIHIALASISFAALTVGAVFAAIYMFLHRKLKHKQWNDTVRRLPSLEK 179 Query: 182 MDKYSYTAILAGVPLLLASLVLAGMSIVAEGRTPLFQDTKVLTTLIGLAVYIIYILLKRS 241 +D YSY A++AG +L+ SLVLA MS+ GR LF D KVL+TL LA+Y++Y + +R Sbjct: 180 LDVYSYKALMAGTIILVMSLVLAVMSVAMAGRWTLFLDIKVLSTLTALAMYMVYFIKRRL 239 Query: 242 ARRSGTSMARWAIAGYGFIILNFLLNSWSEFHGW 275 RRSG A WA+ GYGFIILNF LN+WS FH W Sbjct: 240 WRRSGREAAIWALIGYGFIILNFFLNTWSAFHSW 273 >B1DDT2.1 B1DDT2_9BACL Cytochrome c assembly protein Length = 271 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 135/264 (51%) Query: 10 IYDXXXXXXXXXXXFVFSDCLKRSPXXXXXXXXXXXXXXILQAAGLAVRFSQEQGLPIFT 69 +YD F FSD + + ILQ L R + + Sbjct: 8 LYDAILYIYALSLLFYFSDFMDANRRAKRIGTGLLIFVWILQTVILVSRLVTHFEITAIS 67 Query: 70 PYDFLFWFSFIIVLTSLAVAYTRGGEFTILLLSMAGFSVFLLNRVWLTAEDHTLQSWSAV 129 +++ FS+++V SL ++ EF + L+++ FSV LN D A+ Sbjct: 68 SFEYWLGFSWLLVTISLVISQFFKIEFLVFLVNIISFSVLALNLYSRPGMDEQFGVSQAM 127 Query: 130 HGWLALHIILANLSFAALTLGTVFAIMYLFLHTRLKHKKWDDRIRRLPSLETMDKYSYTA 189 L +HI L ++A+LT+G++FA MYLFLH +LK K+W RRLPSL+ ++++S A Sbjct: 128 RDLLLVHISLVLCAYASLTIGSIFAGMYLFLHKQLKGKRWTPFTRRLPSLDRIERFSDRA 187 Query: 190 ILAGVPLLLASLVLAGMSIVAEGRTPLFQDTKVLTTLIGLAVYIIYILLKRSARRSGTSM 249 I+ GVPLL SL +A ++AEGR L D KVLT+ L Y+ YI+ + RR GT + Sbjct: 188 IIIGVPLLAMSLSVAVTVLLAEGRPQLLLDWKVLTSFATLIFYVNYIIQRAMLRRPGTQL 247 Query: 250 ARWAIAGYGFIILNFLLNSWSEFH 273 AR + + +I+N L + S FH Sbjct: 248 ARLHLIAFVMLIINLLSSYLSTFH 271 >O69103.1 HEMX_BREBE Protein hemX Length = 272 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 74/271 (27%), Positives = 135/271 (49%), Gaps = 11/271 (4%) Query: 10 IYDXXXXXXXXXXXFVFSDCLKRSPXXXXXXXXXXXXXXILQAAGLAVRFSQEQGLPIFT 69 IYD F F+D L+ + LQ A + + P+ T Sbjct: 7 IYDLTIFLYAASVLFYFNDFLQSNRKVNRLAFGLLVVVWALQTAFFVSQAVMKGYFPVIT 66 Query: 70 PYDFLFWFSFIIVLTSLAVAYTRGGEFTILLLSMAGFSVFLLNRVWLTAEDHTLQSWSAV 129 ++ LF++S+++V SLA+ Y + + L ++ GF V +++ + + +++ S++ Sbjct: 67 LFETLFFYSWVLVGLSLAIHYFFRIDLLVFLPNIIGFVVLVMS---MFLPETPIEAVSSI 123 Query: 130 --HGWLALHIILANLSFAALTLGTVFAIMYLFLHTRLKHKKWDDRIRRLPSLETMDKYSY 187 L H+ LA S+ A +L +F+ MYL H LK ++W +RRLPSL+ ++ Y+Y Sbjct: 124 LTSELLLTHVTLAMFSYGAFSLSMIFSAMYLLQHKMLKGRRWSPLLRRLPSLDQLEGYAY 183 Query: 188 TAILAGVPLLLASLVLA---GMSIVAEGRTPLFQDTKVLTTLIGLAVYIIYILLKRSARR 244 + GVP+LL S+VL G ++ E D+KVL + + LA+Y +++ + R Sbjct: 184 RMNMLGVPMLLLSIVLGIIWGKMVLGE---KFLLDSKVLLSELVLAIYSLWLYQRYRIRC 240 Query: 245 SGTSMARWAIAGYGFIILNFLLNSWSEFHGW 275 ++W + + +++NFL + S FH W Sbjct: 241 RCADSSQWNVLAFLLLLINFLGFTTSTFHDW 271 >Q2B6L1.1 Q2B6L1_9BACI Membrane-bound protein Length = 277 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 118/230 (51%), Gaps = 1/230 (0%) Query: 49 ILQAAGLAVRFSQEQGLPIFTPYDFLFWFSFIIVLTSLAVAYTRGGEFTILLLSMAGFSV 108 ILQ L + P+ T ++ L++++++++ SL + +F + ++ GF + Sbjct: 48 ILQTVFLFLYMKNTGRFPVLTIFEGLYFYAWVLITLSLGINRLLRVDFIVFFTNVLGFVI 107 Query: 109 FLLNRVWLTAEDHTLQSWSAVHGWLALHIILANLSFAALTLGTVFAIMYLFLHTRLKHKK 168 ++ + + + V L +HI +A LS+ A +L VF+++YL + LK KK Sbjct: 108 MAIHTFAPVQYESEVMAQQLVSELLLIHITVAILSYGAFSLSFVFSLLYLIQYDLLKRKK 167 Query: 169 WDDRIRRLPSLETMDKYSYTAILAGVPLLLASLVLAGMSIVAEGRTPLFQDTKVLTTLIG 228 W R+ R+ L ++ SY + GVP+L+ SL+L + + D KV+ + I Sbjct: 168 WGSRLLRIADLSKLEHMSYVLNVIGVPMLIISLILGTQWAYIKVPDMHWYDAKVIGSFIV 227 Query: 229 LAVYIIYILLKRSARRSGTSMARWAIAGYGFIILN-FLLNSWSEFHGWGS 277 L VY +Y+ ++ + SG S+A W +A + +++N FL S FH W S Sbjct: 228 LGVYSVYLYVRVARGFSGKSLALWNLASFLIVLINFFLFGRLSSFHFWSS 277 >Q9K8F9.1 Q9K8F9_BACHD Negative effector of the concentration of HemA Length = 271 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 124/231 (53%), Gaps = 7/231 (3%) Query: 49 ILQAAGLAVRFSQEQGLPIFTPYDFLFWFSFIIVLTSLAVAYTRGGEFTILLLSMAGFSV 108 +LQ +R LPI TP++ LF++++++V SL + +F + +++ GF Sbjct: 43 LLQTVFFIIRAIDLNRLPIITPFEGLFFYAWVVVTLSLIINRVFRVDFLVFFVNIIGFV- 101 Query: 109 FLLNRVWLTAEDHTLQSWSA--VHGWLALHIILANLSFAALTLGTVFAIMYLFLHTRLKH 166 +++ T + +S ++ + L +H+ + LS+A LTL F+ +Y+ H LK Sbjct: 102 -MMSFSLFTPDGDVPESLASLLISELLIIHVSMILLSYAGLTLAFAFSALYVLEHQMLKR 160 Query: 167 KKWDDRIRRLPSLETMDKYSYTAILAGVPLLLASLVLAGM-SIVAEGRTPLFQDTKVLTT 225 KKW R+ RL SL +D+Y++ + + PL L ++L + + + G P F D KV+++ Sbjct: 161 KKWGKRLLRLGSLTKLDQYAFHSTMFAFPLFLIGIILGFVWASIQFGELPWF-DAKVISS 219 Query: 226 LIGLAVYIIYILLKRSARRSGTSMARWAIAGYGFIILN-FLLNSWSEFHGW 275 +I + Y +Y+ + + G SMA +A + I++N FL S S FH W Sbjct: 220 MIVMCGYAVYLYQRVVKMKRGYSMALLNVACFLLILINYFLPGSLSTFHLW 270 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.141 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,429,499,668 Number of extensions: 51209283 Number of successful extensions: 213213 Number of sequences better than 1.0e-05: 170 Number of HSP's gapped: 213124 Number of HSP's successfully gapped: 170 Length of query: 277 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 143 Effective length of database: 1,798,280,193 Effective search space: 257154067599 Effective search space used: 257154067599 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)