BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0176.0004.p (455 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL15.1 B3KL15_9BACI Glutamate-1-semialdehyde-2,1-aminomutase 714 0.0 B1DDS7.1 B1DDS7_9BACL Glutamate-1-semialdehyde-2,1-aminomutase 682 0.0 C0ZAH4.1 C0ZAH4_BREBN Glutamate-1-semialdehyde 2,1-aminomutase E... 626 e-177 C5D5K4.1 C5D5K4_9BACI Glutamate-1-semialdehyde-2,1-aminomutase 614 e-174 C3IY21.1 C3IY21_9BACI Glutamate-1-semialdehyde-2,1-aminomutase 611 e-173 >B3KL15.1 B3KL15_9BACI Glutamate-1-semialdehyde-2,1-aminomutase Length = 431 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/426 (80%), Positives = 380/426 (89%) Query: 30 RREEASRKAFEEAKQYIPGGVNSPVRAFKSVGLTPVYADHGAGSRIYDIDGNSFIDYVCS 89 R+EE SR AFEEAK YIPGGVNSPVRAFKSVGLTP+Y D G GSR+YDIDGNSFIDYV S Sbjct: 6 RKEELSRSAFEEAKLYIPGGVNSPVRAFKSVGLTPIYIDRGEGSRVYDIDGNSFIDYVGS 65 Query: 90 WGPLIMGHAHPEVVKALQETAVKGTSFGAPTLLETEMAKTVVGRVHSVDIVRMVNSGTEA 149 WGPLIMGHAHPEVV+ALQETA KGTSFGAPTLLET+MAK V RV S+++VRMVNSGTEA Sbjct: 66 WGPLIMGHAHPEVVEALQETAAKGTSFGAPTLLETKMAKLVCERVPSIEVVRMVNSGTEA 125 Query: 150 TMSAIRLARGYTGRSKILKFEGSYHGHADSLLIKAGSGVATLGLPDSPGVPEGVAVNTIT 209 TMSAIRLARGYTGRSKI+KFEGSYHGHADSLLIKAGSG+ATLGLPDSPGVPE VA NTI Sbjct: 126 TMSAIRLARGYTGRSKIIKFEGSYHGHADSLLIKAGSGIATLGLPDSPGVPESVASNTIA 185 Query: 210 VPYNDLEGVKIAFERYGNEIAAVIVEPIAGNMGVVPPLPGFLEGLRKVTTGYGALLIFDE 269 VPYNDLE V++AFER+G EIAAVIVEP+AGNMGVVPP PGFLEGLRKVT+ YG++LIFDE Sbjct: 186 VPYNDLESVQLAFERFGEEIAAVIVEPVAGNMGVVPPQPGFLEGLRKVTSDYGSILIFDE 245 Query: 270 VMTGFRVNRGCAQGLFGIEPDLTCFGKVIGGGLPVGAYGGKRELMEQIAPTGPIYQAGTL 329 VMTGFRV+ CAQG +G+ PDLTC GKVIGGGLPVGAYGGKRELM+QIAP GPIYQAGTL Sbjct: 246 VMTGFRVDLNCAQGRYGVTPDLTCLGKVIGGGLPVGAYGGKRELMDQIAPAGPIYQAGTL 305 Query: 330 SGNPLAMAAGLTTLKLLTPEVYDRLESLGARLEAGLRRNAADTGIPLTINRVGSMVCPFF 389 SGNPLAMAAG TTLKLLTP VY++LE GARL+AG ++A + GIPLTINR+GSMVCPFF Sbjct: 306 SGNPLAMAAGYTTLKLLTPAVYEQLEERGARLQAGFEQSAKEFGIPLTINRIGSMVCPFF 365 Query: 390 TEGPVTNYDTAKASNLNHFRAYFGKMLDQGISVPPSQFEGMFVSAAHSEQDIDDTLEAHY 449 T PV N+DTAK S+L+ FR YF M+ +G+SVPPSQFEGMF+SAAH+ +DID T+EA+Y Sbjct: 366 TNTPVVNFDTAKTSDLDRFRRYFAAMVQEGVSVPPSQFEGMFISAAHTVEDIDATIEANY 425 Query: 450 QALKSL 455 A KSL Sbjct: 426 NAFKSL 431 >B1DDS7.1 B1DDS7_9BACL Glutamate-1-semialdehyde-2,1-aminomutase Length = 433 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/426 (77%), Positives = 366/426 (85%) Query: 30 RREEASRKAFEEAKQYIPGGVNSPVRAFKSVGLTPVYADHGAGSRIYDIDGNSFIDYVCS 89 RR++ SR+AF AKQ +PGGVNSPVRAFKSVGL PVY DHG GSR+YDIDGNS+IDYV S Sbjct: 8 RRDDRSREAFARAKQVLPGGVNSPVRAFKSVGLNPVYMDHGKGSRVYDIDGNSYIDYVGS 67 Query: 90 WGPLIMGHAHPEVVKALQETAVKGTSFGAPTLLETEMAKTVVGRVHSVDIVRMVNSGTEA 149 WGPLIMGHAHPEV++A+++TA KGTSFGAPT LET MA+ VV RV SVDIVRMVNSGTEA Sbjct: 68 WGPLIMGHAHPEVIEAIKKTAEKGTSFGAPTELETLMAELVVERVPSVDIVRMVNSGTEA 127 Query: 150 TMSAIRLARGYTGRSKILKFEGSYHGHADSLLIKAGSGVATLGLPDSPGVPEGVAVNTIT 209 TMSA+RLARGYT RSKILKFEGSYHGHADSLLIKAGSGVATLGLPDSPGVPEGVA TIT Sbjct: 128 TMSALRLARGYTKRSKILKFEGSYHGHADSLLIKAGSGVATLGLPDSPGVPEGVASQTIT 187 Query: 210 VPYNDLEGVKIAFERYGNEIAAVIVEPIAGNMGVVPPLPGFLEGLRKVTTGYGALLIFDE 269 VPYNDLE K+AFE++G EIA +IVEP+AGNMGVVPPLPGFL+GLR++T YG+LLIFDE Sbjct: 188 VPYNDLESAKLAFEKFGEEIACIIVEPVAGNMGVVPPLPGFLQGLRELTEQYGSLLIFDE 247 Query: 270 VMTGFRVNRGCAQGLFGIEPDLTCFGKVIGGGLPVGAYGGKRELMEQIAPTGPIYQAGTL 329 VMTGFRVN CAQGL+ + PDLTCFGKVIGGGLPVGAYGGKRE+ME IAP+GPIYQAGTL Sbjct: 248 VMTGFRVNYNCAQGLYDVTPDLTCFGKVIGGGLPVGAYGGKREIMEMIAPSGPIYQAGTL 307 Query: 330 SGNPLAMAAGLTTLKLLTPEVYDRLESLGARLEAGLRRNAADTGIPLTINRVGSMVCPFF 389 SGNPLAMAAG TTLKLLT E Y+ LE RL+ G +NAA GI TINRVGSMVCPFF Sbjct: 308 SGNPLAMAAGYTTLKLLTKETYELLERQAVRLQLGFEKNAAKHGIATTINRVGSMVCPFF 367 Query: 390 TEGPVTNYDTAKASNLNHFRAYFGKMLDQGISVPPSQFEGMFVSAAHSEQDIDDTLEAHY 449 T+ V N++TAK SNL FRAYF MLD G+S+ PSQFEGMFVSA HS++DID T+ H Sbjct: 368 TDTHVINFETAKTSNLEQFRAYFSAMLDLGVSIAPSQFEGMFVSAVHSDEDIDATIAIHD 427 Query: 450 QALKSL 455 Q L SL Sbjct: 428 QVLASL 433 >C0ZAH4.1 C0ZAH4_BREBN Glutamate-1-semialdehyde 2,1-aminomutase EC=5.4.3.8 Length = 429 Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust. Identities = 307/422 (72%), Positives = 352/422 (83%), Gaps = 1/422 (0%) Query: 33 EASRKAFEEAKQYIPGGVNSPVRAFKSVGLTPVYADHGAGSRIYDIDGNSFIDYVCSWGP 92 E S + F EA+ YIPGGVNSPVRAFKSVG PVY + G GSRI+D+DGNS+IDY+ SWGP Sbjct: 4 EKSTQLFAEAQHYIPGGVNSPVRAFKSVGGNPVYIEKGEGSRIFDVDGNSYIDYIGSWGP 63 Query: 93 LIMGHAHPEVVKALQETAVKGTSFGAPTLLETEMAKTVVGRVHSVDIVRMVNSGTEATMS 152 LI+GHAHP V+ A+ E A GTSFGAPT ETEMAK V V SV++VRMVNSGTEATMS Sbjct: 64 LILGHAHPRVLAAITEVAALGTSFGAPTERETEMAKLVCEIVPSVEVVRMVNSGTEATMS 123 Query: 153 AIRLARGYTGRSKILKFEGSYHGHADSLLIKAGSGVATLGLPDSPGVPEGVAVNTITVPY 212 A+RLARGYT R+KI+KFEG YHGHADSLLIKAGSGVATLGLPDSPGVPEG A NTITVPY Sbjct: 124 ALRLARGYTRRNKIMKFEGCYHGHADSLLIKAGSGVATLGLPDSPGVPEGTAHNTITVPY 183 Query: 213 NDLEGVKIAFERYGNEIAAVIVEPIAGNMGVVPPLPGFLEGLRKVTTGYGALLIFDEVMT 272 NDLE VK+AFE +G+++AAVIVEPI GNMGVVPP PGFLEGLR++T +G LLIFDEVMT Sbjct: 184 NDLESVKLAFEAFGDDLAAVIVEPIGGNMGVVPPQPGFLEGLREITEKHGTLLIFDEVMT 243 Query: 273 GFRVNRGCAQGLFGIEPDLTCFGKVIGGGLPVGAYGGKRELMEQIAPTGPIYQAGTLSGN 332 GFRV G AQ L+GI PDLT GKVIGGGLPVGAYGGKRE+M+Q+AP GPIYQAGTLSGN Sbjct: 244 GFRVALGGAQELYGITPDLTTMGKVIGGGLPVGAYGGKREIMQQVAPAGPIYQAGTLSGN 303 Query: 333 PLAMAAGLTTLKLLT-PEVYDRLESLGARLEAGLRRNAADTGIPLTINRVGSMVCPFFTE 391 PLAMAAGLTTL+ L+ P Y+RLE + ARL GL NA GIP T+NRVGSMVC FFTE Sbjct: 304 PLAMAAGLTTLQELSKPGAYERLEKMSARLAEGLADNAKKLGIPHTLNRVGSMVCLFFTE 363 Query: 392 GPVTNYDTAKASNLNHFRAYFGKMLDQGISVPPSQFEGMFVSAAHSEQDIDDTLEAHYQA 451 PV NY+TAK S+L F AYF +L++G+ +PPSQFEGMFVS AH+++DI+ T+EA YQA Sbjct: 364 TPVINYETAKTSDLERFSAYFSYLLEEGVMIPPSQFEGMFVSLAHTDEDIERTIEASYQA 423 Query: 452 LK 453 +K Sbjct: 424 MK 425 >C5D5K4.1 C5D5K4_9BACI Glutamate-1-semialdehyde-2,1-aminomutase Length = 432 Score = 614 bits (1583), Expect = e-174, Method: Compositional matrix adjust. Identities = 296/428 (69%), Positives = 346/428 (80%) Query: 28 LARREEASRKAFEEAKQYIPGGVNSPVRAFKSVGLTPVYADHGAGSRIYDIDGNSFIDYV 87 + R E S+ A+EEA + +PGGVNSPVRAFKSV +TP++ G GS+IYDIDGN +IDYV Sbjct: 1 MVRSYERSKAAYEEAVRLLPGGVNSPVRAFKSVKMTPIFMARGKGSKIYDIDGNEYIDYV 60 Query: 88 CSWGPLIMGHAHPEVVKALQETAVKGTSFGAPTLLETEMAKTVVGRVHSVDIVRMVNSGT 147 SWGPLI+GHA+P VV+AL++ GTSFGAPTL+E E+AK V+ RV S++IVRMVNSGT Sbjct: 61 LSWGPLILGHANPRVVEALKKVTENGTSFGAPTLIENELAKLVIERVPSIEIVRMVNSGT 120 Query: 148 EATMSAIRLARGYTGRSKILKFEGSYHGHADSLLIKAGSGVATLGLPDSPGVPEGVAVNT 207 EATMSA+RLARGYTGR+KI+KFEG YHGH DSLLIKAGSGVATLGLPDSPGVPE VA NT Sbjct: 121 EATMSALRLARGYTGRNKIVKFEGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEAVAQNT 180 Query: 208 ITVPYNDLEGVKIAFERYGNEIAAVIVEPIAGNMGVVPPLPGFLEGLRKVTTGYGALLIF 267 ITVPYNDLE V+ AFER+G +IAAVIVEP+AGNMGVVPP+PGFL+GLR +T YGALLIF Sbjct: 181 ITVPYNDLESVRYAFERFGEDIAAVIVEPVAGNMGVVPPVPGFLQGLRDITKQYGALLIF 240 Query: 268 DEVMTGFRVNRGCAQGLFGIEPDLTCFGKVIGGGLPVGAYGGKRELMEQIAPTGPIYQAG 327 DEVMTGFRV+ CAQG FGIEPDLTC GKVIGGGLPVGAYGGK E+ME++AP+GPIYQAG Sbjct: 241 DEVMTGFRVDYHCAQGYFGIEPDLTCLGKVIGGGLPVGAYGGKAEIMEKVAPSGPIYQAG 300 Query: 328 TLSGNPLAMAAGLTTLKLLTPEVYDRLESLGARLEAGLRRNAADTGIPLTINRVGSMVCP 387 TLSGNPLAM AG TL LTPE YD RLE GLR A IP TINR GSM+ Sbjct: 301 TLSGNPLAMTAGYETLIQLTPETYDEFRKKADRLEEGLREAAEKYEIPHTINRAGSMIGF 360 Query: 388 FFTEGPVTNYDTAKASNLNHFRAYFGKMLDQGISVPPSQFEGMFVSAAHSEQDIDDTLEA 447 FFT VTNY+ AK SNL F AY+ +M +QGI +PPSQFEG+F+S H+++DI+ T+ A Sbjct: 361 FFTNEEVTNYEKAKTSNLEMFAAYYREMAEQGIFLPPSQFEGLFLSTEHTDEDIEKTIAA 420 Query: 448 HYQALKSL 455 +A + Sbjct: 421 AERAFAKI 428 >C3IY21.1 C3IY21_9BACI Glutamate-1-semialdehyde-2,1-aminomutase Length = 430 Score = 611 bits (1576), Expect = e-173, Method: Compositional matrix adjust. Identities = 298/428 (69%), Positives = 350/428 (81%) Query: 28 LARREEASRKAFEEAKQYIPGGVNSPVRAFKSVGLTPVYADHGAGSRIYDIDGNSFIDYV 87 + R E S+ A+EEA + +PGGVNSPVRAFKSVG+TP++ G G++IYDIDGN +IDYV Sbjct: 1 MMRSYERSKAAYEEAVKLMPGGVNSPVRAFKSVGMTPIFMARGQGAKIYDIDGNEYIDYV 60 Query: 88 CSWGPLIMGHAHPEVVKALQETAVKGTSFGAPTLLETEMAKTVVGRVHSVDIVRMVNSGT 147 SWGPLI+GHA+P+VV+AL+ A +GTSFGAPTLLE E+AK V+ RV SV+IVRMVNSGT Sbjct: 61 LSWGPLILGHANPQVVEALKRVAEQGTSFGAPTLLENELAKLVIERVPSVEIVRMVNSGT 120 Query: 148 EATMSAIRLARGYTGRSKILKFEGSYHGHADSLLIKAGSGVATLGLPDSPGVPEGVAVNT 207 EATMSA+RLARGYT R+KI+KFEGSYHGH DSLLIKAGSGVATLGLPDSPGVPE VA +T Sbjct: 121 EATMSALRLARGYTKRNKIIKFEGSYHGHGDSLLIKAGSGVATLGLPDSPGVPESVAQHT 180 Query: 208 ITVPYNDLEGVKIAFERYGNEIAAVIVEPIAGNMGVVPPLPGFLEGLRKVTTGYGALLIF 267 ITVPYNDL+ V+ AFER+G +IAAVIVEP+AGNMGVVPP+PGFLEGLRKVT YGALLIF Sbjct: 181 ITVPYNDLDSVRYAFERFGEDIAAVIVEPVAGNMGVVPPVPGFLEGLRKVTKQYGALLIF 240 Query: 268 DEVMTGFRVNRGCAQGLFGIEPDLTCFGKVIGGGLPVGAYGGKRELMEQIAPTGPIYQAG 327 DEVMTGFRV+ CAQG +GIEPDLTC GKVIGGGLPVGAYGGK E+ME +AP GP+YQAG Sbjct: 241 DEVMTGFRVDYHCAQGYYGIEPDLTCLGKVIGGGLPVGAYGGKAEIMELVAPNGPVYQAG 300 Query: 328 TLSGNPLAMAAGLTTLKLLTPEVYDRLESLGARLEAGLRRNAADTGIPLTINRVGSMVCP 387 TLSGNPLAM AG TL+ LTPE Y+ L ARL GL + A IP TINR GSM+ Sbjct: 301 TLSGNPLAMTAGYETLRQLTPETYEELGRKAARLADGLHQAAEKYDIPHTINRAGSMIGF 360 Query: 388 FFTEGPVTNYDTAKASNLNHFRAYFGKMLDQGISVPPSQFEGMFVSAAHSEQDIDDTLEA 447 FFT PV NY+TAK S+L F AY+ +M ++GI +PPSQFEG+F+S AHS+ DI+ T+ A Sbjct: 361 FFTNEPVVNYETAKTSDLELFAAYYREMANEGIFLPPSQFEGLFLSTAHSDDDIEYTIAA 420 Query: 448 HYQALKSL 455 + L Sbjct: 421 AERVFARL 428 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,787,786,123 Number of extensions: 122652186 Number of successful extensions: 360941 Number of sequences better than 1.0e-05: 8207 Number of HSP's gapped: 340271 Number of HSP's successfully gapped: 8290 Length of query: 455 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 316 Effective length of database: 1,751,175,118 Effective search space: 553371337288 Effective search space used: 553371337288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)