BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0175.0022.p
         (110 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KAP1.1 B3KAP1_9BACI Penicillinase repressor                         194   1e-48
A6LSB6.1 A6LSB6_CLOB8 Transcriptional repressor, CopY family          100   3e-20
B6FSI7.1 B6FSI7_9CLOT Putative uncharacterized protein                 99   2e-19
C0D9M6.1 C0D9M6_9CLOT Putative uncharacterized protein                 89   1e-16
C5ERQ3.1 C5ERQ3_9FIRM Transcriptional repressor                        87   4e-16

>B3KAP1.1 B3KAP1_9BACI Penicillinase repressor
          Length = 124

 Score =  194 bits (494), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 89/110 (80%), Positives = 99/110 (90%)

Query: 1   MEAIWVCTPPVTSTELLNMFAQKGRDWKAQTISTFLSRLVDKGVLTVTRHGRLNKYVPSI 60
           ME IW CTPPVTSTELL +FAQ+GR+WKAQT+STFLSRLVDKG LT  R GR NKY P I
Sbjct: 15  MEVIWECTPPVTSTELLALFAQRGREWKAQTMSTFLSRLVDKGALTAARDGRTNKYTPRI 74

Query: 61  SPEEYKLIEAQHVLDGLYQGSVKNLISAMYDGDKLSDQDIDELKQWFSEK 110
           SPE+YKL+EAQHVLDGLYQGSVKNLISA+YDG+KLSD+DI ELKQWFS+K
Sbjct: 75  SPEDYKLMEAQHVLDGLYQGSVKNLISALYDGEKLSDEDIAELKQWFSQK 124


>A6LSB6.1 A6LSB6_CLOB8 Transcriptional repressor, CopY family
          Length = 122

 Score =  100 bits (250), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 73/109 (66%), Gaps = 1/109 (0%)

Query: 1   MEAIWVCTPPVTSTELLNMFAQKGRDWKAQTISTFLSRLVDKGVLTVTRHGRLNKYVPSI 60
           M+ IW     +T+ E+L+    K   WK  TI T +SRL +KG+L+VT+ G+LN Y P I
Sbjct: 14  MKIIWKKNDQITTAEILDALP-KENSWKVTTIMTLISRLTEKGILSVTKVGKLNNYFPKI 72

Query: 61  SPEEYKLIEAQHVLDGLYQGSVKNLISAMYDGDKLSDQDIDELKQWFSE 109
           + EEYK I+  + L+ +++GSVK+ ++ +++  K+S++DI ELK+W  E
Sbjct: 73  TEEEYKAIQTDNFLEDIHKGSVKSFMATLFNNKKISNKDIAELKEWLKE 121


>B6FSI7.1 B6FSI7_9CLOT Putative uncharacterized protein
          Length = 129

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 75/111 (67%), Gaps = 3/111 (2%)

Query: 1   MEAIWVC--TPPVTSTELLNMFAQKGRDWKAQTISTFLSRLVDKGVLTVTRHGRLNKYVP 58
           M AIW       +T++ L  +F +K + WK  +I TFLSRLV+KG L+  ++G+ N Y P
Sbjct: 12  MMAIWNAENKNSITASYLEEVFGEK-KGWKKTSILTFLSRLVEKGYLSCEKNGKSNFYEP 70

Query: 59  SISPEEYKLIEAQHVLDGLYQGSVKNLISAMYDGDKLSDQDIDELKQWFSE 109
            +S EE+   E++H+LD LY+ S+KN + ++YDGD+LS QD+ EL+++  E
Sbjct: 71  IVSYEEFSRRESKHILDKLYRNSLKNFVVSLYDGDELSRQDVKELREFLDE 121


>C0D9M6.1 C0D9M6_9CLOT Putative uncharacterized protein
          Length = 136

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 72/107 (67%)

Query: 1   MEAIWVCTPPVTSTELLNMFAQKGRDWKAQTISTFLSRLVDKGVLTVTRHGRLNKYVPSI 60
           ME IW     V   +L +    +G++WKA TI T L+RL ++G+++V + GRLN+Y+  +
Sbjct: 23  MEVIWDRGGSVMFADLSSELEARGKEWKANTILTLLARLAERGMVSVCKRGRLNEYMARV 82

Query: 61  SPEEYKLIEAQHVLDGLYQGSVKNLISAMYDGDKLSDQDIDELKQWF 107
           S E+Y+ ++A+ ++D ++ GS K+LISA+   + L+  D DELK+++
Sbjct: 83  SREDYQQMQARSLVDRVFGGSTKHLISALVKQEYLTKDDYDELKEFW 129


>C5ERQ3.1 C5ERQ3_9FIRM Transcriptional repressor
          Length = 125

 Score = 87.4 bits (215), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 65/110 (59%), Gaps = 1/110 (0%)

Query: 1   MEAIWVCTPPVTSTELLNMFAQKGRDWKAQTISTFLSRLVDKGVLTVTRHGRLNKYVPSI 60
           M+ IW   PPVT+T +      K ++WK QT+ T + RLV++G L   +HG+   Y P +
Sbjct: 15  MKVIWDNEPPVTTTSVREQLG-KEKEWKIQTVVTLMLRLVERGFLRSEKHGKERTYFPLV 73

Query: 61  SPEEYKLIEAQHVLDGLYQGSVKNLISAMYDGDKLSDQDIDELKQWFSEK 110
           S E+Y   E  + +   +  S+ NLI+ +YD + L+D+DIDEL  W  E+
Sbjct: 74  SKEDYLKFETGNFMKQYHNSSLFNLINTLYDDEALTDKDIDELLTWAKER 123


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 669,080,116
Number of extensions: 24015192
Number of successful extensions: 70258
Number of sequences better than 1.0e-05: 230
Number of HSP's gapped: 70237
Number of HSP's successfully gapped: 230
Length of query: 110
Length of database: 3,060,696,203
Length adjustment: 77
Effective length of query: 33
Effective length of database: 2,335,278,048
Effective search space: 77064175584
Effective search space used: 77064175584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)