BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0175.0020.p (163 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2BBF9.1 Q2BBF9_9BACI General stress protein 26, putative 214 3e-54 C1PBU6.1 C1PBU6_BACCO Pyridoxamine 5'-phosphate oxidase-related ... 207 4e-52 B1DB73.1 B1DB73_9BACL Pyridoxamine 5'-phosphate oxidase-related ... 199 7e-50 B3K4X3.1 B3K4X3_9BACI Pyridoxamine 5'-phosphate oxidase-related ... 194 2e-48 B1YMF7.1 B1YMF7_EXIS2 Pyridoxamine 5'-phosphate oxidase-related ... 194 3e-48 >Q2BBF9.1 Q2BBF9_9BACI General stress protein 26, putative Length = 159 Score = 214 bits (544), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 99/155 (63%), Positives = 126/155 (81%) Query: 9 QEAVETVRELIKGIDTAMFTTISEEGLVFRPMKTQEVEFDGDLWFMTKKDTSKFGEIIHD 68 QE +ET+RELIK +DTAM TT+SEEGLV RPMKTQEVEFDGDLWF TKK+T K+ EI+HD Sbjct: 4 QEEMETLRELIKDVDTAMLTTVSEEGLVSRPMKTQEVEFDGDLWFFTKKETDKYEEILHD 63 Query: 69 PRVNVVYADKSYVSIRGTAKIVEDLEKKKEFWSAGYNTFLKTTYNDPDVILIQVHAEAAE 128 VNV YA KSYVS+RG A+IVED+ KKKE WS Y ++T+Y+DP V+LI+V AEAAE Sbjct: 64 KDVNVAYAGKSYVSVRGRAEIVEDIGKKKELWSKMYEKIMQTSYDDPSVVLIKVKAEAAE 123 Query: 129 YWKSGNLAEMATYMFKRITHQDTEKSDLNKTIELE 163 YW+SG+ + A +M KRIT QD E++ +N+T+++E Sbjct: 124 YWESGSFTKKAVFMLKRITGQDAEEAGVNETVQME 158 >C1PBU6.1 C1PBU6_BACCO Pyridoxamine 5'-phosphate oxidase-related FMN-binding Length = 162 Score = 207 bits (526), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 96/156 (61%), Positives = 125/156 (80%) Query: 8 HQEAVETVRELIKGIDTAMFTTISEEGLVFRPMKTQEVEFDGDLWFMTKKDTSKFGEIIH 67 ++EAV +RELIK IDTAM TT+S++GLV RPMKTQ+VEFDGDLWF TKKDT KF EI+H Sbjct: 7 NREAVSKLRELIKDIDTAMLTTMSDKGLVARPMKTQDVEFDGDLWFFTKKDTDKFHEILH 66 Query: 68 DPRVNVVYADKSYVSIRGTAKIVEDLEKKKEFWSAGYNTFLKTTYNDPDVILIQVHAEAA 127 + VNV YA KSYVS+RGTA+IVED KKKE+WSAGY LKT+Y+DP+VIL++V+ ++A Sbjct: 67 NREVNVTYAGKSYVSVRGTAEIVEDPAKKKEYWSAGYEKLLKTSYDDPNVILLKVNVKSA 126 Query: 128 EYWKSGNLAEMATYMFKRITHQDTEKSDLNKTIELE 163 EYW SGN A+M + F R+ +T+ LN+T++ + Sbjct: 127 EYWDSGNFAKMVIHFFNRVVGNETDDDHLNETLKFK 162 >B1DB73.1 B1DB73_9BACL Pyridoxamine 5'-phosphate oxidase-related FMN-binding Length = 164 Score = 199 bits (506), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 90/158 (56%), Positives = 125/158 (79%) Query: 5 DKSHQEAVETVRELIKGIDTAMFTTISEEGLVFRPMKTQEVEFDGDLWFMTKKDTSKFGE 64 + ++QEA+E +RELIK I AM TT+SEEGLV RPMKTQ+V+FDG LWF+TKKDT KF E Sbjct: 6 NSNNQEAIEKIRELIKDIKIAMLTTVSEEGLVSRPMKTQDVDFDGSLWFLTKKDTDKFHE 65 Query: 65 IIHDPRVNVVYADKSYVSIRGTAKIVEDLEKKKEFWSAGYNTFLKTTYNDPDVILIQVHA 124 ++ + +VNV YADKS+VSIRG A++V+ +K KEFW+ Y L+TTY+DP ++LI+V A Sbjct: 66 LLQNKQVNVAYADKSFVSIRGVAELVDSTDKIKEFWNKAYEEILETTYDDPSLVLIKVDA 125 Query: 125 EAAEYWKSGNLAEMATYMFKRITHQDTEKSDLNKTIEL 162 EAAEYW SGN +M ++F R+ ++TE ++LN+T+E+ Sbjct: 126 EAAEYWDSGNKFKMVKFLFNRLMGKNTEGTELNQTVEM 163 >B3K4X3.1 B3K4X3_9BACI Pyridoxamine 5'-phosphate oxidase-related FMN-binding Length = 164 Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 91/163 (55%), Positives = 127/163 (77%), Gaps = 1/163 (0%) Query: 1 MSTLDKSHQEAVETVRELIKGIDTAMFTTISEEGLVFRPMKTQEVEFDGDLWFMTKKDTS 60 MS +QEAVETV+++IK I+TAMF+TISE G+ RPM+TQ++EFDGDLWF+TK+DTS Sbjct: 1 MSNGTVVNQEAVETVKDIIKDIETAMFSTISEGGINARPMQTQDIEFDGDLWFLTKRDTS 60 Query: 61 KFGEIIHDPRVNVVYADKSYVSIRGTAKIVEDLEKKKEFWSAGYNTFLKTTYNDPDVILI 120 K+ EI+ +P VNV Y KSYVSIRG A++V+DLEKKK W+A Y FL+T+Y+DP++ILI Sbjct: 61 KYEEILANPNVNVAYVGKSYVSIRGKAEVVDDLEKKKALWNAAYEKFLQTSYDDPNIILI 120 Query: 121 QVHAEAAEYWKSGNLAEMATYMFKRITHQDTE-KSDLNKTIEL 162 +V + AEYW++GN + FK++ Q+ + SD+NKT++L Sbjct: 121 KVDTDTAEYWETGNKTKTVKAFFKKMVGQEPKGDSDINKTVDL 163 >B1YMF7.1 B1YMF7_EXIS2 Pyridoxamine 5'-phosphate oxidase-related FMN-binding Length = 161 Score = 194 bits (492), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 91/162 (56%), Positives = 121/162 (74%), Gaps = 1/162 (0%) Query: 1 MSTLDKSHQEAVETVRELIKGIDTAMFTTISEEGLVFRPMKTQEVEFDGDLWFMTKKDTS 60 MST S+QEAVETV++LI I+TAM TTIS+EGLV RPM+TQ++EFDGDLWF+T KDT Sbjct: 1 MSTNHTSNQEAVETVKKLIDKIETAMLTTISDEGLVSRPMQTQDIEFDGDLWFLTSKDTG 60 Query: 61 KFGEIIHDPRVNVVYADKSYVSIRGTAKIVEDLEKKKEFWSAGYNTFLKTTYNDPDVILI 120 K+ EI+ +P VNV Y DKSYVSIRG A+ VED+ +KKE WS Y +L TTY DP V+LI Sbjct: 61 KYNEILKNPNVNVAYVDKSYVSIRGKAEFVEDVARKKELWSPRYEAYLGTTYEDPKVVLI 120 Query: 121 QVHAEAAEYWKSGNLAEMATYMFKRITHQDTEKSDLNKTIEL 162 +V+ E AEYW++GN + + K+ D + +++NK ++L Sbjct: 121 KVNTEGAEYWETGNTTKSVKQLLKKAVGND-DSNEINKKVDL 161 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.131 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 932,503,986 Number of extensions: 36516738 Number of successful extensions: 96207 Number of sequences better than 1.0e-05: 117 Number of HSP's gapped: 96104 Number of HSP's successfully gapped: 117 Length of query: 163 Length of database: 3,060,696,203 Length adjustment: 123 Effective length of query: 40 Effective length of database: 1,901,911,358 Effective search space: 76076454320 Effective search space used: 76076454320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 125 (52.8 bits)