BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0175.0017.p (369 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3B2.1 B3K3B2_9BACI NADH:flavin oxidoreductase/NADH oxidase 434 e-120 A1U7C2.1 A1U7C2_MARAV NADH:flavin oxidoreductase/NADH oxidase 384 e-105 C0TM48.1 C0TM48_9PSEU NADH:flavin oxidoreductase 379 e-103 A0YAD6.1 A0YAD6_9GAMM FMN oxidoreductase 372 e-101 B4RZV9.1 B4RZV9_ALTMD NADH-dependent flavin oxidoreductase, Oye ... 371 e-101 >B3K3B2.1 B3K3B2_9BACI NADH:flavin oxidoreductase/NADH oxidase Length = 374 Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust. Identities = 216/373 (57%), Positives = 271/373 (72%), Gaps = 5/373 (1%) Query: 1 MTKPQEQIYSLETLFEPYTIHRLTIPNRIVMSPMARAFSPEGVPGEDMAAYYRRRAENGV 60 M+ + + S +LF PYTI LT+P+R+VM+PM R FSP GVPG D+AAYYRRRAENGV Sbjct: 1 MSNQNQSVRSAASLFVPYTIGNLTLPSRVVMAPMTRGFSPNGVPGPDVAAYYRRRAENGV 60 Query: 61 GLIITVG-MIDHPAATSDPGLANIFGEAAMNGWREVIRQVHEAGGRIVPQLSHMGMIRPM 119 GLIIT G +I+HPAAT +P + N GEAA+NGW EV+RQVHEAGG+I+PQ+ H+GM RP+ Sbjct: 61 GLIITEGTLINHPAATDNPNVPNFHGEAALNGWAEVVRQVHEAGGKIMPQIWHIGMTRPL 120 Query: 120 GSQPYPDAPSIGPSGLDMQGNKISEPMTEEEIARVIRXXXXXXXXXXXXGFDGIELSGGH 179 G++P P+A IGPSGLD+ GN +++PMT++EI +V++ GFDG+E+ G H Sbjct: 121 GAEPNPEALPIGPSGLDLDGNVVTKPMTKDEIEQVVQAYADAAANAKRLGFDGVEIHGAH 180 Query: 180 GLLIDQFFWEKTNQRTDRYGGDFLKRTRFXXXXXXXXXXXXGPDYPISIRLSQWKMGDYT 239 G LIDQF WE+TN+RTD YGGD LKR RF GPD+P++IRLSQWK Y Sbjct: 181 GYLIDQFLWERTNRRTDEYGGDMLKRARFAIEVVKAVRQAVGPDFPVAIRLSQWKTNQYE 240 Query: 240 AKLVDTPEQLEQFLNVLVQAGVDIFHISTRRFWDPEFAGSELGFAGWVKKLTGKTTIAVG 299 AKL DTPE+L Q L L AGVDIFH STRRFW+PEF GS+L FAGW KKLTGKT I VG Sbjct: 241 AKLADTPEKLGQLLTALSDAGVDIFHCSTRRFWEPEFEGSDLNFAGWAKKLTGKTVITVG 300 Query: 300 SVGMD----NDPAEGEETDHQGMEELLKRLDNQEFDLVAVGRALLGDPSWAKKIREGRPE 355 SVG+D + +G+ + +EELL RL+ EFDLVAVGRALL DP WA K+R+GR + Sbjct: 301 SVGLDEVFTSLFTQGKGAGQRDLEELLNRLEENEFDLVAVGRALLADPEWAAKVRDGRFD 360 Query: 356 EIQAFTPDAAAKL 368 E+ FTP++ L Sbjct: 361 ELAPFTPESLQTL 373 >A1U7C2.1 A1U7C2_MARAV NADH:flavin oxidoreductase/NADH oxidase Length = 370 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/367 (51%), Positives = 242/367 (65%), Gaps = 7/367 (1%) Query: 10 SLETLFEPYTIHRLTIPNRIVMSPMARAFSPEGVPGEDMAAYYRRRAENGVGLIITVG-M 68 +L LFEP+ +H L + NR+ M+PM R FSP+GVPG+D+ YYRRRAE GVGLIIT G + Sbjct: 4 NLGPLFEPFELHNLKLRNRVAMAPMTRNFSPKGVPGQDVVDYYRRRAEAGVGLIITEGTV 63 Query: 69 IDHPAATSDPGLANIFGEAAMNGWREVIRQVHEAGGRIVPQLSHMGMIRPMGSQPYPDAP 128 ++H AA P + +G+ A+ GW++V+ VHEAGG I PQL H+G +R G +P P P Sbjct: 64 VNHAAANGYPNVPAFYGDEALAGWKKVVDAVHEAGGAIFPQLWHVGAVRKEGIEPDPSVP 123 Query: 129 SIGPSGLDMQGNKISEPMTEEEIARVIRXXXXXXXXXXXXGFDGIELSGGHGLLIDQFFW 188 PSGL G + MT+E+I VI+ GFDG+E+ G HG L+DQF W Sbjct: 124 GYSPSGLFAPGKPNGKAMTKEDIQDVIKAFGDAAQDAKALGFDGVEIHGAHGYLLDQFLW 183 Query: 189 EKTNQRTDRYGGDFLKRTRFXXXXXXXXXXXXGPDYPISIRLSQWKMGDYTAKLVDTPEQ 248 E TNQR D YGG R RF GPDYPI +R SQWK DY AKLV++PE+ Sbjct: 184 EGTNQRDDEYGGSLENRLRFVVEIVEEVRHRVGPDYPIMLRFSQWKQQDYEAKLVNSPEE 243 Query: 249 LEQFLNVLVQAGVDIFHISTRRFWDPEFAGSELGFAGWVKKLTGKTTIAVGSVGMDNDPA 308 LE+FL LV+AGVDIFH STRRFW+PEF GS L AGW +K+TGK T++VGSVG+ D Sbjct: 244 LERFLKPLVEAGVDIFHASTRRFWEPEFEGSNLNLAGWTQKITGKPTMSVGSVGLTEDFI 303 Query: 309 EG------EETDHQGMEELLKRLDNQEFDLVAVGRALLGDPSWAKKIREGRPEEIQAFTP 362 G E + G++EL++R++N EFDL+AVGRALL DP W K++EGR E++AF Sbjct: 304 SGTFASKKEAVEQSGIDELVERMNNGEFDLIAVGRALLQDPEWLVKVKEGRLNEVEAFAK 363 Query: 363 DAAAKLY 369 + AKLY Sbjct: 364 KSLAKLY 370 >C0TM48.1 C0TM48_9PSEU NADH:flavin oxidoreductase Length = 374 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 193/373 (51%), Positives = 242/373 (64%), Gaps = 8/373 (2%) Query: 2 TKPQEQIYSLETLFEPYTIHRLTIPNRIVMSPMARAFSPEGVPGEDMAAYYRRRAENGVG 61 T E+ SL L P+T+ LT+P R+ M+PM RAFSP+G PG D+A+YY RRA GVG Sbjct: 3 TSSAERAASL--LSRPFTVGSLTVPGRVAMAPMTRAFSPDGTPGADVASYYARRAAGGVG 60 Query: 62 LIITVGM-IDHPAATSDPGLANIFGEAAMNGWREVIRQVHEAGGRIVPQLSHMGMIRPMG 120 LI+T G ++H +A + GEA + GW V+ QVH AGG IVPQL H+GM RP G Sbjct: 61 LIVTEGTYVNHRSAGLSDRIPRFHGEAQLAGWANVVEQVHAAGGTIVPQLWHVGMARPAG 120 Query: 121 SQPYPDAPSIGPSGLDMQGNKISEPMTEEEIARVIRXXXXXXXXXXXXGFDGIELSGGHG 180 S P PDAPSIGPSG+ + G + MT+ +I V+ GFDGIEL G HG Sbjct: 121 SAPNPDAPSIGPSGVGIGGTADGDTMTQRDIDDVVAAFATAAADAERIGFDGIELHGAHG 180 Query: 181 LLIDQFFWEKTNQRTDRYGGDFLKRTRFXXXXXXXXXXXXGPDYPISIRLSQWKMGDYTA 240 LIDQF W TN+RTD YGGD + RTRF PD+P+ +R+SQWKMGDY A Sbjct: 181 YLIDQFLWAGTNRRTDAYGGDPVARTRFAAEVIAAVRAAVSPDFPLILRMSQWKMGDYAA 240 Query: 241 KLVDTPEQLEQFLNVLVQAGVDIFHISTRRFWDPEFAG-SELGFAGWVKKLTGKTTIAVG 299 ++ DTP++LE L L AGVD+FH STRR+WDPEF G +L AGWVKKLTGK TI+VG Sbjct: 241 RIADTPQELEAILAPLAAAGVDVFHASTRRYWDPEFDGEGDLNLAGWVKKLTGKATISVG 300 Query: 300 SVGMDNDPAE---GEETDHQG-MEELLKRLDNQEFDLVAVGRALLGDPSWAKKIREGRPE 355 SVG+D D ++ G+ + + ++ LL RL+ EFDL+AVGRALL DP W K+ GR + Sbjct: 301 SVGLDADVSKFFGGDPSAARADIDALLDRLERDEFDLIAVGRALLADPEWVAKVVSGRAD 360 Query: 356 EIQAFTPDAAAKL 368 EI FT DAA L Sbjct: 361 EITPFTKDAATTL 373 >A0YAD6.1 A0YAD6_9GAMM FMN oxidoreductase Length = 373 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 184/372 (49%), Positives = 240/372 (64%), Gaps = 4/372 (1%) Query: 1 MTKPQEQIYSLETLFEPYTIHRLTIPNRIVMSPMARAFSPEGVPGEDMAAYYRRRAENGV 60 MTK ++ +LF+P+T L + NRIVM+PM R FSPEG+P ++A YYRRRAE G Sbjct: 1 MTKDNRMSSTVASLFKPFTSKNLELDNRIVMAPMTREFSPEGIPDAEVAGYYRRRAEGGT 60 Query: 61 GLIITVGM-IDHPAATSDPGLANIFGEAAMNGWREVIRQVHEAGGRIVPQLSHMGMIRPM 119 GLIIT G ++ P AT + I G+ A+ GW+ VI +VH A G+I+PQL H+GM R Sbjct: 61 GLIITEGTTVNDPVATMGASVPRIHGDDALAGWKNVIEEVHAADGKIMPQLWHVGMARNS 120 Query: 120 GSQPYPDAPSIGPSGLDMQGNKISEPMTEEEIARVIRXXXXXXXXXXXXGFDGIELSGGH 179 + P+P+ PS GPSGL G +++EPMT + I VI GFDGIE+ G H Sbjct: 121 KTAPFPELPSAGPSGLVQPGKQVAEPMTVQHIEAVIEAFASAAADSQRIGFDGIEIHGAH 180 Query: 180 GLLIDQFFWEKTNQRTDRYGGDFLKRTRFXXXXXXXXXXXXGPDYPISIRLSQWKMGDYT 239 G L+DQFFWE TNQR+D +GG R RF GPD+PI +R SQWK DYT Sbjct: 181 GYLVDQFFWEGTNQRSDVWGGSMENRGRFGEEIIKAIRAATGPDFPIILRYSQWKQQDYT 240 Query: 240 AKLVDTPEQLEQFLNVLVQAGVDIFHISTRRFWDPEFAGSELGFAGWVKKLTGKTTIAVG 299 A+L ++P+ LEQFL L AGVD+FH STRR+W+PEF GS+L AGW KK+TGK TI VG Sbjct: 241 ARLAESPDLLEQFLAPLADAGVDVFHCSTRRYWEPEFDGSDLNLAGWTKKITGKPTITVG 300 Query: 300 SVGMDND---PAEGEETDHQGMEELLKRLDNQEFDLVAVGRALLGDPSWAKKIREGRPEE 356 SVG+D D G++ + +++L++RLD EFD+V VGRALL DP WA KIR R +E Sbjct: 301 SVGLDGDFFGAFAGQDAPTRSVDDLVERLDKGEFDMVGVGRALLQDPEWANKIRHSRLDE 360 Query: 357 IQAFTPDAAAKL 368 ++ + A L Sbjct: 361 VRQYDGKALGTL 372 >B4RZV9.1 B4RZV9_ALTMD NADH-dependent flavin oxidoreductase, Oye family protein Length = 365 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 183/359 (50%), Positives = 236/359 (65%), Gaps = 4/359 (1%) Query: 14 LFEPYTIHRLTIPNRIVMSPMARAFSPEGVPGEDMAAYYRRRAENGVGLIITVGM-IDHP 72 LF+PY+ L++ NRIVM+PM R FSP GVP D+A YY+RRA+ G GLIIT G ++ Sbjct: 6 LFKPYSQGNLSLTNRIVMAPMTRQFSPNGVPTSDVAGYYKRRAQGGTGLIITEGTTVNDK 65 Query: 73 AATSDPGLANIFGEAAMNGWREVIRQVHEAGGRIVPQLSHMGMIRPMGSQPYPDAPSIGP 132 AT D + GE A+ GW+ V+ +VH GG+I+PQL H+GM R PYP+ S GP Sbjct: 66 VATMDANIPQFHGEEALTGWKNVVDEVHSVGGKIMPQLWHVGMARVAEKAPYPELSSAGP 125 Query: 133 SGLDMQGNKISEPMTEEEIARVIRXXXXXXXXXXXXGFDGIELSGGHGLLIDQFFWEKTN 192 SGL G + +EPMTEE I VI G DG+E+ G HG LIDQFFWE TN Sbjct: 126 SGLFKPGKQGAEPMTEEHIESVIAAFAQAAADAKSIGMDGVEIHGAHGYLIDQFFWEGTN 185 Query: 193 QRTDRYGGDFLKRTRFXXXXXXXXXXXXGPDYPISIRLSQWKMGDYTAKLVDTPEQLEQF 252 QRTD +GG R RF GPD+PI +R SQWK DYTA+L TP++LEQF Sbjct: 186 QRTDSWGGSMDNRGRFAVEIIKAIRAATGPDFPIVLRYSQWKQQDYTARLATTPQELEQF 245 Query: 253 LNVLVQAGVDIFHISTRRFWDPEFAGSELGFAGWVKKLTGKTTIAVGSVGMDND---PAE 309 L L AGVDIFH S RR+W+ EF GS+L AGW KK+TGK TI VGSVG+++D + Sbjct: 246 LMPLSSAGVDIFHCSQRRYWESEFDGSDLNLAGWTKKITGKPTITVGSVGLNDDFFGAFK 305 Query: 310 GEETDHQGMEELLKRLDNQEFDLVAVGRALLGDPSWAKKIREGRPEEIQAFTPDAAAKL 368 G+++ + +++LL+RL+ EFDLVAVGRALL DP+WA KI+E R +E++ ++ A A L Sbjct: 306 GQDSSTRAVDDLLERLEEGEFDLVAVGRALLQDPNWANKIKENRTDELEQYSGKALASL 364 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,254,743,808 Number of extensions: 95041728 Number of successful extensions: 222302 Number of sequences better than 1.0e-05: 3761 Number of HSP's gapped: 214162 Number of HSP's successfully gapped: 3773 Length of query: 369 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 232 Effective length of database: 1,770,017,148 Effective search space: 410643978336 Effective search space used: 410643978336 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)