BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0175.0014.p (223 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGN1.1 B3KGN1_9BACI TraX family protein 195 2e-48 B6FSD9.1 B6FSD9_9CLOT Putative uncharacterized protein 104 5e-21 A4XH28.1 A4XH28_CALS8 TraX family protein 99 3e-19 C0C385.1 C0C385_9CLOT Putative uncharacterized protein 96 3e-18 B9MMW7.1 B9MMW7_ANATD TraX family protein 96 3e-18 >B3KGN1.1 B3KGN1_9BACI TraX family protein Length = 207 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 106/205 (51%), Positives = 133/205 (64%) Query: 2 MQIIAMLTMLIDHIGYIFFPGEMGWRIVGRIAFPIYCYMLVQGHIHTSSRPRYLRRLLWI 61 MQ IAMLTMLIDHIG +FFP + WRI+GRIAFPIY Y LVQGH +TSSRP+Y+ RL I Sbjct: 1 MQWIAMLTMLIDHIGLVFFPHQEMWRIIGRIAFPIYVYALVQGHRYTSSRPKYIARLAVI 60 Query: 62 ALLTQIPYNLALDPGGWNXXXXXXXXXXXXXXXXXXPNPWYGIPVVILAFVLMDRLPLDY 121 A ++QIPY LALDP G N + VV+ A LM P DY Sbjct: 61 AAVSQIPYQLALDPEGLNVVVTLLAGALVLYVLERSDSRLLSWMVVVAACALMSEFPFDY 120 Query: 122 NAYGLLLVLIFRYVRSYWMILAHFLLNSFYLFYYGWTVQMLSIVPTLLIAGAPGFWRLLE 181 AYGLLL+LIFRY ++ W++ H LLN + F W +QM S++PT +IA P WR LE Sbjct: 121 GAYGLLLILIFRYAQAGWLVPLHMLLNLLFWFLNDWELQMWSVIPTAVIAYGPHLWRKLE 180 Query: 182 QKRLPRWIWWSFYPLHLAALALVKI 206 R+ RW+W SFYPLHL A+A++++ Sbjct: 181 SVRVSRWVWRSFYPLHLLAIAVLRV 205 >B6FSD9.1 B6FSD9_9CLOT Putative uncharacterized protein Length = 220 Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 115/213 (53%), Gaps = 16/213 (7%) Query: 2 MQIIAMLTMLIDHIGYIFFPGEMGWRIVGRIAFPIYCYMLVQGHIHTSSRPRYLRRLLWI 61 +++IAML+ML DHIG + FP ++ +R++GR+AFPI+ Y LV+G +T +Y+ R+ + Sbjct: 15 LKMIAMLSMLADHIGAVLFPEQILFRVIGRLAFPIFAYTLVEGFFYTHDIKKYMCRIGIL 74 Query: 62 ALLTQIPYNLA-----LDPGGWNXXXXXXXXXXXXXXXXXXPNPWYGIPVVILAFVLMDR 116 ALL++IP++L L+ G N + + V +++F++ D Sbjct: 75 ALLSEIPFDLTVSGKILEFGHQNIFFTLFIGLVMMYFLMKSSGKFEMVTVSLVSFLIADL 134 Query: 117 LPLDYNAYGLLLVLIFRYVRS--YWMILAHFLLNSFYLFYYGWTVQMLSIVPTLLIAGAP 174 L DY G+L++L F R W ++ +N L +L+++P L G Sbjct: 135 LRTDYGGVGVLMILCFYLFRDDMLWKTISVLFVN-IALMGGVQVFGVLALIPIYLYNGTQ 193 Query: 175 GFWRLLEQKRLPRWIWWSFYPLHLAALALVKIL 207 G K++ +W+++ FYP+HL AL L+K++ Sbjct: 194 G-------KKM-KWLFYGFYPVHLLALFLIKMI 218 >A4XH28.1 A4XH28_CALS8 TraX family protein Length = 232 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 114/213 (53%), Gaps = 21/213 (9%) Query: 1 MMQIIAMLTMLIDHIGYIFFPGEMGWRIVGRIAFPIYCYMLVQGHIHTSSRPRYLRRLLW 60 ++++IA +MLIDHIGY++FP + +RIVGRIAFPI+ + + G TS+ RYL+RL Sbjct: 28 LLKLIAAASMLIDHIGYLYFPNRVLFRIVGRIAFPIFAFQVAAGFKFTSNPKRYLKRLFI 87 Query: 61 IALLTQIPYNLAL-DPGGWNXXXXXXXXXXXXXXXXXXPNPWYG---IPVVILAFVLMDR 116 AL++QIP++L DP N WY IP+ I FV Sbjct: 88 FALVSQIPFSLMTGDPYELNVIATFFFAAVALFFIQ---KRWYFLVIIPLAISYFV---- 140 Query: 117 LPLDYNAYGLLLVLIF--RYVRSYWMILAHFLLNSFYLFYYGWTVQ---MLSIVPTLLIA 171 P+DY YG+L +LIF + ++ +L F + GW VQ ++S+V LLI Sbjct: 141 -PMDYGIYGVLSILIFYLSFDMPLLQLIGFCILTWFEVHLIGWPVQFYSIISVVLILLIR 199 Query: 172 GAPGFWRLLEQKRLPRWIWWSFYPLHLAALALV 204 P + L RL ++ ++ FYP+H+ L ++ Sbjct: 200 MLPVEFEL----RLNKYFFYWFYPVHMLLLVVI 228 >C0C385.1 C0C385_9CLOT Putative uncharacterized protein Length = 220 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 107/208 (51%), Gaps = 24/208 (11%) Query: 2 MQIIAMLTMLIDHIGYIFFPGEMGWRIVGRIAFPIYCYMLVQGHIHTSSRPRYLRRLLWI 61 ++ IA+++M+IDH G I +P EM +R +GRIAFPI+C++LV+G HT + RY+RR+L Sbjct: 15 LKCIAIISMVIDHTGAILYPDEMIFRYIGRIAFPIFCFLLVEGFCHTGNVYRYMRRMLVF 74 Query: 62 ALLTQIPYNLA-----LDPGGWNXXXXXXXXXXXXXXXXXXPNPWYGIPVVILAFVLMDR 116 A +++IPY+LA L+ G N ++L + Sbjct: 75 AFVSEIPYDLAFQGRILEFGHQNVFFTLFLGVILMWALQRAGEWPEKAAEIVLVMWIAGI 134 Query: 117 LPLDYNAYGLLLVLIFRYVRS-YWMILAH-----FLLNSFYLFYYGWTVQMLSIVPTLLI 170 L DY+ G+LL+ +F +R W+ LA F+ N F Y L+++P L Sbjct: 135 LKTDYSYTGILLIAVFYLLRDGLWIKLAAGTAWCFIWNGFVQKY-----GALAMIPVALY 189 Query: 171 AGAPGFWRLLEQKRLPRWIWWSFYPLHL 198 G E+ R ++ +++FYPLHL Sbjct: 190 NG--------ERGRSMKYFFYAFYPLHL 209 >B9MMW7.1 B9MMW7_ANATD TraX family protein Length = 225 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 108/209 (51%), Gaps = 14/209 (6%) Query: 1 MMQIIAMLTMLIDHIGYIFFPGEMGWRIVGRIAFPIYCYMLVQGHIHTSSRPRYLRRLLW 60 ++++IA +TM IDH G+++FP + RI+GRIAFPI+ Y + G HTS RYL+RLL Sbjct: 19 LLKLIASITMFIDHTGFLYFPQKPLLRIIGRIAFPIFAYQVAVGFWHTSDHKRYLKRLLI 78 Query: 61 IALLTQIPYNLALDPGGWNXXXXXXXXXXXXXXXXXXPNPWYGIPVVILAFVLMDRLPLD 120 A+++Q P+ L N WY + +V LA + +D Sbjct: 79 FAIISQYPFYLMTGDMELN---VIATFFFAALCLYFFKRSWYVLVIVPLAISYF--VSMD 133 Query: 121 YNAYGLLLVLIFR--YVRSYWMILAHFLLNSFYLFYYGWTVQMLSIVPTLLIAGAPGFWR 178 Y YG+L VLIF Y + ++ +L + GW +Q+ SI+ +LI F R Sbjct: 134 YGIYGVLAVLIFYFLYEKPILQLVGFSILTVIASYLLGWQLQVYSILSVVLIL----FVR 189 Query: 179 LLE---QKRLPRWIWWSFYPLHLAALALV 204 +L + RL ++ ++ FYP+H+ L V Sbjct: 190 MLPVDFEFRLNKYFFYWFYPVHMLFLVFV 218 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.334 0.149 0.528 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,328,874,558 Number of extensions: 51313998 Number of successful extensions: 192435 Number of sequences better than 1.0e-05: 58 Number of HSP's gapped: 192428 Number of HSP's successfully gapped: 58 Length of query: 223 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 92 Effective length of database: 1,826,543,238 Effective search space: 168041977896 Effective search space used: 168041977896 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 128 (53.9 bits)