BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0175.0013.p (505 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8A6.1 B3K8A6_9BACI Copper amine oxidase domain protein 340 2e-91 B1DJ29.1 B1DJ29_9BACL Copper amine oxidase domain protein 171 2e-40 A9U7K0.1 A9U7K0_PHYPA Predicted protein (Fragment) 71 2e-10 B3KD28.1 B3KD28_9BACI Copper amine oxidase domain protein 71 3e-10 Q2RFZ0.1 Q2RFZ0_MOOTA Copper amine oxidase-like 61 3e-07 >B3K8A6.1 B3K8A6_9BACI Copper amine oxidase domain protein Length = 512 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 192/507 (37%), Positives = 287/507 (56%), Gaps = 9/507 (1%) Query: 3 KMKARTKWXXXXXXXX-XXXXGCQSVAGFDVNKALLGDLDVKSSESSTTLSVNAVPA-AG 60 KM + KW GCQ+V G D+NKA+L LDVKSSESS ++ VPA Sbjct: 9 KMYKKFKWLTVLIAAVLVVMTGCQAVGGLDINKAMLTSLDVKSSESSASIRFEVVPADKA 68 Query: 61 ISAEDQKMVDLINSFSLNIGHVKLQDNGSISASGVVGYKQLSIPFTFFMDTTAVVFTAKG 120 +S+ED++ +DLINS SLNI H ++D+ ++S G V Y +P MD + G Sbjct: 69 LSSEDKEAIDLINSLSLNIDHAIVEDSNTVSMQGSVHYSDKKVPLHLSMDAKGMAIQLDG 128 Query: 121 AKQPFYYPLEGYEESLGLKGFDQNKTTELSKLLTQFVVKNLPNPGAISIASVNESVYGEQ 180 AKQPFY ++ + + ++ K V+K+ PNP +S+ V E V GE Sbjct: 129 AKQPFYLSMDTTVPGMPDTSQYEQAIQDVVKKAAGLVLKHFPNPSKVSVKPVQEKVNGES 188 Query: 181 LSLTKLHTEITGEELPALVKSFLKSISKDTEGFTAFISGLYDYLYPLLEANGIGASELSD 240 L+LT L E+TGEE+ +VK F +S+ KD G I YD +YP++ + IG + D Sbjct: 189 LNLTHLQMELTGEEILNMVKPFAESLLKDEAGLKQVIGDAYDAIYPMMTS--IGEAYGED 246 Query: 241 LGLGDIPLEDKEGVVTXXXXXXXXXXXXXXXXXXKQLDNLYSSTPELKTVLSKDTKLNVD 300 + L +P E KE VV +Q + L P +TV KDT L +D Sbjct: 247 VEL--LPQESKEEVVASLYEIVHGALTEFTENYDEQKEQLLEELPGSETVFGKDTTLKLD 304 Query: 301 LFVDNGFHVRKQNIDLNVALPASEDLPLQSISLKLGTQTWNVNGPVTADRIST-EGALDM 359 + D + RK ++L VALPASEDLPL+++ + + WN+ G V A+++ T +G LD+ Sbjct: 305 YYFDEQLNTRKNALELTVALPASEDLPLKAVKVYSEGEVWNIGGAVKANKVDTSKGVLDV 364 Query: 360 SSTNLTPGETLRSFEQGSDLYNLLKNDMGITSKSLV--IAPDDDYYYPIVEGGTTYVPLR 417 + ++TPG+ LR+FE+ S +YN+LK+D+ IT KS+ I+ +D Y I + ++VPLR Sbjct: 365 LNDSVTPGQVLRNFEKDSLIYNVLKDDLKITQKSMYLNISNEDFGYGAIKKNHQSFVPLR 424 Query: 418 YLAEDLDAAVEWDGANRAIKVTDDVYGDQLVFKIGSDKVQINGATVKLPQPVFIDEYGDA 477 YLA+ LDA V+W + I V +D+ G+++V +GS K + G +V LP+ F+ G Sbjct: 425 YLADQLDAEVKWTKGSNKIIVINDLTGEEIVVTVGSKKASVGGKSVTLPEAPFVHSNGST 484 Query: 478 YVPLRLLAEALHAKVETDEDGYIYIDR 504 YVPLR +AEAL A + + DG+I ++R Sbjct: 485 YVPLRFMAEALGATLYLEGDGWISVER 511 >B1DJ29.1 B1DJ29_9BACL Copper amine oxidase domain protein Length = 525 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 147/500 (29%), Positives = 233/500 (46%), Gaps = 38/500 (7%) Query: 23 GCQSVAGFDVNKALLGDLDVKSSESSTT----LSVNAVPAAGISAEDQKMVDLINSFSLN 78 GCQ++ G D N L L V S+ES + L +N G+ ED ++ L ++ L Sbjct: 24 GCQAIQGVDFNTVLKNTLKVTSAESKQSVELKLLMNEEAYEGMPEEDIALMKLFSNMKLQ 83 Query: 79 IGHVKLQDNGSISASGVVGY-KQLSIPFTFFMDTTAVVFTAKGAKQPFYYPLEGY----- 132 + VK+QD S +G + + ++SI F+ TA V +GAK P + G Sbjct: 84 LDSVKVQDASHASYAGKLIFGDKVSIGFSIKQSDTAAVIEVEGAKLPIVLDVTGAGIGSM 143 Query: 133 --EESLG--LKGFDQNKTTELSKLL----TQFVVKNLPNPGAISIASVNESVYGEQLSLT 184 LG +G D T + K + T F + NLPNP IS+ +V E + G SL Sbjct: 144 LGTAELGGTAEGSDDESVTAIGKEVLDSATSFFIDNLPNPDKISVNAVQEPINGVNTSLF 203 Query: 185 KLHTEITGEELPALVKSFLKSISKDTEGFTAFISGLYDYL--YP-LLEANGIGASELSDL 241 + E++G E+ A +K ++ ++ D +G F+ + + +P E G+ E + L Sbjct: 204 HVKAEMSGTEIWAWIKKYVDVLASDRDGLETFVKEIVAIMSSHPEFWEEMGVNPFEQTGL 263 Query: 242 GLGDIPLEDKEGVVTXXXXXXXXXXXXXXXXXXKQLDNLYSSTPELKTVLSKDTKLNVDL 301 D+P D + K ++ S +LK V + D+ + +L Sbjct: 264 ---DMPTTDD---MIKEMTDELEATFVSLQEELKAMEE--ESDEDLKAVFNDDSSIKAEL 315 Query: 302 FVDNGFHVRKQNIDLNVALPASEDLPLQSISLKLGTQTWNVNGPVTADR--ISTEGALDM 359 +VD+ +RKQ ID+ + PL +SL + ++ WNVNG V AD I + Sbjct: 316 YVDSKMDIRKQVIDVTLKPSDQALFPLDGLSLHMESELWNVNGKVEADAPVIPAQAIHSD 375 Query: 360 SSTNLTPGETLRSFEQGSDLYNLLKNDMGITSKSLVIAPDDDYYYPIVEGG-TTYVPLRY 418 ++ + LR F + S Y+LL + +GI +++ ++ D Y IV T VPLR Sbjct: 376 QLDSMQGYQYLRMFNKQSAAYSLL-DQLGIGEQTVELSVDSRLYPAIVTPKYVTIVPLRR 434 Query: 419 LAEDLDAAVEWDGANRAIKVTDDVYGDQLVFKIGSDKVQINGATVKLPQPVFIDEYGDA- 477 +AE L A V++D + + V D+ +V K GSD+V +NG K F+ + D Sbjct: 435 VAEQLGATVKYDKKTKNVTVYDEATNTTIVLKEGSDRVTVNG---KAATWSFVAKTVDGA 491 Query: 478 -YVPLRLLAEALHAKVETDE 496 YVP R A AL AKV D+ Sbjct: 492 LYVPGRDFANALGAKVRWDD 511 >A9U7K0.1 A9U7K0_PHYPA Predicted protein (Fragment) Length = 279 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 4/97 (4%) Query: 405 PIVEGGTTYVPLRYLAEDLDAAVEWDGANRAIKVTDDVYGDQ-LVFKIGSDKVQINGATV 463 P+++ GTT++PLR + E +DA V W+ + + V V GD+ ++ IGS +NG V Sbjct: 181 PVIKNGTTFIPLRGVFEKMDAKVTWNQQKKQVTV---VKGDKKILLTIGSRAAYVNGEAV 237 Query: 464 KLPQPVFIDEYGDAYVPLRLLAEALHAKVETDEDGYI 500 KL ++ G YVPLR ++E + A+V D+ Y+ Sbjct: 238 KLNSAPYVTPAGSTYVPLRFISETIGAQVVWDQTNYL 274 >B3KD28.1 B3KD28_9BACI Copper amine oxidase domain protein Length = 159 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 3/93 (3%) Query: 405 PIVEGGTTYVPLRYLAEDLDAAVEWDGANRAIKVTDDVYGDQLVFKIGSDKVQINGATVK 464 P V+ G TYVP R +AE L+A V W+ R+I V+ D QL+ +GS +NG + Sbjct: 58 PFVKKGNTYVPFRAIAEALEAEVIWNPEKRSITVSKDGVSIQLL--VGSKTASVNGKKIS 115 Query: 465 LPQPVFIDEYGDAYVPLRLLAEALHAKVETDED 497 L P + + G+ YVP+R ++EAL+A V+ + + Sbjct: 116 LDAPATVTK-GNTYVPIRFISEALNATVKWESE 147 >Q2RFZ0.1 Q2RFZ0_MOOTA Copper amine oxidase-like Length = 249 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 8/110 (7%) Query: 387 MGITSKSLVIAPDDDYYYPIVEGGTTYVPLRYLAEDLDAAVEWDGANRAIKVTDDVYGDQ 446 +G ++K L IAP Y +GGTT VP R++ E L A V+++ + T + Sbjct: 139 VGSSTKELPIAP-----YQAGQGGTTMVPFRFIGEALGAKVDYNANTNTVSYTTPAH--S 191 Query: 447 LVFKIGSDKVQINGATVKLPQPVFIDEYGDAYVPLRLLAEALHAKVETDE 496 ++ KIG+ I+G V LP P + G VPLR++++ L A V+ D+ Sbjct: 192 VILKIGAPAATIDGREVTLPMPATLVN-GTTMVPLRVISQGLGAMVDWDQ 240 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,773,145,044 Number of extensions: 114695832 Number of successful extensions: 212715 Number of sequences better than 1.0e-05: 14 Number of HSP's gapped: 212847 Number of HSP's successfully gapped: 14 Length of query: 505 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 365 Effective length of database: 1,741,754,103 Effective search space: 635740247595 Effective search space used: 635740247595 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)