BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0175.0012.p (216 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q927J7.1 Q927J7_LISIN Lin2791 protein 127 9e-28 A0ALX8.1 A0ALX8_LISW6 Complete genome 122 2e-26 B0A8E6.1 B0A8E6_9CLOT Putative uncharacterized protein 117 8e-25 Q4EFN0.1 Q4EFN0_LISMO Serine/threonine protein phosphatase famil... 117 9e-25 Q71WD6.1 Q71WD6_LISMF Serine/threonine protein phosphatase famil... 117 1e-24 >Q927J7.1 Q927J7_LISIN Lin2791 protein Length = 443 Score = 127 bits (318), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 76/210 (36%), Positives = 109/210 (51%), Gaps = 18/210 (8%) Query: 1 MHHNLLSHTSMSVAGFKLNNSQEAMKTLRRNNLNLVLSGHIHMQDIARDPKSGNEGTAGA 60 MHHNL H + G+ +N +Q+ + L N+N LSGHIH Q+I R KS + Sbjct: 242 MHHNLTDHNDVIQKGYTINYNQQVIDALTAGNMNFSLSGHIHTQNI-RSAKSSD------ 294 Query: 61 GESPVYDIATSAFAVNPHQYGAMTFDPATRATTYHSTSVDVEGWAKANGITDPNLLHFTA 120 G+ + DI T+A +V PH+YG +T+ + TY S +D+E WAK G +D NLL+F A Sbjct: 295 GKE-ITDIVTNALSVYPHKYGNLTYSAKNKTFTYQSQKLDIEAWAKETGTSDKNLLNFDA 353 Query: 121 YAEKVFADQSYKKAMARLKES----TFSEPEKKSMAEVMAKLNVNYFAGTTSDALDEIKA 176 Y + F + Y KAM L S +S+ +K+ MA+ MA N+ +FAG Sbjct: 354 YDYETFYNSGYDKAMMDLMTSESYKNYSQTDKEKMADTMALNNMAFFAGIAP------PK 407 Query: 177 MPGYKLWMGMDGGFMSGYIQSMAVDKALSN 206 G LW F+ Y+ S +V SN Sbjct: 408 SAGMDLWDSAPNSFLKDYVLSSSVPPKQSN 437 >A0ALX8.1 A0ALX8_LISW6 Complete genome Length = 443 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/203 (36%), Positives = 107/203 (52%), Gaps = 18/203 (8%) Query: 1 MHHNLLSHTSMSVAGFKLNNSQEAMKTLRRNNLNLVLSGHIHMQDIARDPKSGNEGTAGA 60 MHHNL +H+ + GF +N +Q+ + TL N+ LSGHIH Q+I R KS T G Sbjct: 242 MHHNLTNHSDVIQRGFTINYNQQVIDTLTAGNMEFSLSGHIHTQNI-RTAKS----TDG- 295 Query: 61 GESPVYDIATSAFAVNPHQYGAMTFDPATRATTYHSTSVDVEGWAKANGITDPNLLHFTA 120 + DI T+A +V PH+YG +T+ + TY S +D+E WAK +G TD NLL+F Sbjct: 296 --KEITDIVTNALSVYPHKYGNITYSAKNKNFTYQSQKLDIESWAKEHGKTDKNLLNFDQ 353 Query: 121 YAEKVFADQSYKKAMARLKES----TFSEPEKKSMAEVMAKLNVNYFAGTTSDALDEIKA 176 + F + Y KA+ L S T+S+ +K+ MA+ M N+ +FAGT Sbjct: 354 FDYDTFYNSGYDKAIMDLMTSDAYKTYSQSDKEKMADTMGLNNMYFFAGTAP------PK 407 Query: 177 MPGYKLWMGMDGGFMSGYIQSMA 199 G LW F+ Y+ S + Sbjct: 408 SAGMALWDSAPNSFLKDYVLSTS 430 >B0A8E6.1 B0A8E6_9CLOT Putative uncharacterized protein Length = 446 Score = 117 bits (292), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 70/213 (32%), Positives = 111/213 (52%), Gaps = 9/213 (4%) Query: 2 HHNLLSHTSMSVAGFKLNNSQEAMKTLRRNNLNLVLSGHIHMQDIARDPKSGNEGTAGAG 61 HH+L+ H + G+ + N+Q ++ + N+ L LSGH+H+Q I K G + Sbjct: 225 HHSLVDHNDLLNKGYTIENNQRLVELYAKYNIILNLSGHLHIQHI----KPG--YSKKIK 278 Query: 62 ESPVYDIATSAFAVNPHQYGAMTFDPATRATTYHSTSV-DVEGWAKANGITDPNLLHFTA 120 +YDIATS+ V +QY +T++P + + Y+ T V +V WA GI D NLLHF Sbjct: 279 NKKIYDIATSSLLVCRNQYATLTYEP--KKSIYYKTKVLNVSRWAFERGILDNNLLHFNY 336 Query: 121 YAEKVFADQSYKKAMARLKESTFSEPEKKSMAEVMAKLNVNYFAGTTSDALDEIKAMPGY 180 Y+ Q+YKK L SE E K M+ ++KLN +F+GT + I+ Y Sbjct: 337 YSYNYAYSQTYKKIYYELLRRNLSEYEAKMMSSTLSKLNPAFFSGTVVEIYRIIEVSDNY 396 Query: 181 KLWMGMDGGFMSGYIQSMAVDKALSNVSLEMNL 213 K+W + F YI S+ ++ + +L ++L Sbjct: 397 KVWSLVSDIFYHKYIDSIMKERKYDHNTLRLSL 429 >Q4EFN0.1 Q4EFN0_LISMO Serine/threonine protein phosphatase family protein Length = 443 Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 106/201 (52%), Gaps = 18/201 (8%) Query: 1 MHHNLLSHTSMSVAGFKLNNSQEAMKTLRRNNLNLVLSGHIHMQDIARDPKSGNEGTAGA 60 +HHNL H + G+ +N +Q+ + L +++ LSGHIH Q+I R KS T G Sbjct: 242 LHHNLTDHNDVIQKGYTINYNQQVIDALTEGSMDFSLSGHIHTQNI-RSAKS----TDG- 295 Query: 61 GESPVYDIATSAFAVNPHQYGAMTFDPATRATTYHSTSVDVEGWAKANGITDPNLLHFTA 120 + DI T+A +V PH+YG +T+ + TY S +D+E WAKA G TD NLL+F Sbjct: 296 --KEITDIVTNALSVFPHKYGNITYSAKNKNFTYQSQKLDMEAWAKAQGSTDENLLNFNQ 353 Query: 121 YAEKVFADQSYKKAMARL--KES--TFSEPEKKSMAEVMAKLNVNYFAGTTSDALDEIKA 176 + + F + Y KAM L ES +++ +K+ MA+ M N+ +FAGT D Sbjct: 354 FDYETFYNSGYDKAMMDLMTDESYDKYNQADKEKMADTMGLNNMYFFAGTAPPKSD---- 409 Query: 177 MPGYKLWMGMDGGFMSGYIQS 197 G LW F+ Y+ S Sbjct: 410 --GMALWDSAPNSFLKDYVLS 428 >Q71WD6.1 Q71WD6_LISMF Serine/threonine protein phosphatase family protein Length = 443 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 106/201 (52%), Gaps = 18/201 (8%) Query: 1 MHHNLLSHTSMSVAGFKLNNSQEAMKTLRRNNLNLVLSGHIHMQDIARDPKSGNEGTAGA 60 +HHNL H + G+ +N +Q+ + L +++ LSGHIH Q+I R KS T G Sbjct: 242 LHHNLTDHNDVIQKGYTINYNQQVIDALTEGSMDFSLSGHIHTQNI-RSAKS----TDG- 295 Query: 61 GESPVYDIATSAFAVNPHQYGAMTFDPATRATTYHSTSVDVEGWAKANGITDPNLLHFTA 120 + DI T+A +V PH+YG +T+ + TY S +D+E WAKA G TD NLL+F Sbjct: 296 --KEITDIVTNALSVFPHKYGNITYSAKNKNFTYQSQKLDMEAWAKAQGSTDENLLNFNQ 353 Query: 121 YAEKVFADQSYKKAMARL--KES--TFSEPEKKSMAEVMAKLNVNYFAGTTSDALDEIKA 176 + + F + Y KAM L ES +++ +K+ MA+ M N+ +FAGT D Sbjct: 354 FDYETFYNSGYDKAMMDLMTDESYDKYNQADKEKMADTMGLNNMYFFAGTAPPKSD---- 409 Query: 177 MPGYKLWMGMDGGFMSGYIQS 197 G LW F+ Y+ S Sbjct: 410 --GMALWDSAPNSFLKDYVLS 428 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.126 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,236,214,622 Number of extensions: 48171585 Number of successful extensions: 96274 Number of sequences better than 1.0e-05: 40 Number of HSP's gapped: 96227 Number of HSP's successfully gapped: 40 Length of query: 216 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 86 Effective length of database: 1,835,964,253 Effective search space: 157892925758 Effective search space used: 157892925758 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 128 (53.9 bits)