BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0175.0010.p (199 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2TFA9.1 C2TFA9_BACCE Putative uncharacterized protein 281 2e-74 C2VEF6.1 C2VEF6_BACCE Putative uncharacterized protein 281 2e-74 C2U032.1 C2U032_BACCE Putative uncharacterized protein 281 2e-74 C2UXW4.1 C2UXW4_BACCE Putative uncharacterized protein 281 2e-74 C3FMQ7.1 C3FMQ7_BACTB Putative uncharacterized protein 281 3e-74 >C2TFA9.1 C2TFA9_BACCE Putative uncharacterized protein Length = 204 Score = 281 bits (720), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 129/199 (64%), Positives = 159/199 (79%) Query: 1 MSKNFLEAVKGRRSIYAISKESPVSDAEIQEIVEAAVLHSPTSFNSQSSRAVVLLGDKHD 60 M+K+F A++ RRSIYAISKE VSD EIQE++ AV H+P++FNSQS+R VVLLG++HD Sbjct: 6 MAKDFYSAIEDRRSIYAISKEQVVSDEEIQEVIYHAVKHTPSAFNSQSARVVVLLGEQHD 65 Query: 61 KVWDITADTLRKIVPTEQFEGTAQKLASFKAGYGTVLFFEDQAVVKHLQENFALYAENFP 120 K+WDIT +TLRKIVP F T +K+ +FK+GYGTVL+FED VV+ LQENFALY +NFP Sbjct: 66 KLWDITKETLRKIVPENNFASTEEKMNAFKSGYGTVLYFEDNQVVEELQENFALYKDNFP 125 Query: 121 IWSNQSSGILQFVVWTAFAEAGLGASLQHYNPLIDDEVKATFDIPADWKLIAQMPFGKTV 180 IWS QSSG+LQF +WTA G GA+LQHYNPLID+EV+ +++P WKLIAQMPFGK V Sbjct: 126 IWSQQSSGMLQFAIWTALEIEGFGATLQHYNPLIDEEVRKEWEVPESWKLIAQMPFGKPV 185 Query: 181 TAPGEKEFQPIEERVKVIK 199 GEKEFQP+E RVK K Sbjct: 186 VPAGEKEFQPLENRVKFYK 204 >C2VEF6.1 C2VEF6_BACCE Putative uncharacterized protein Length = 199 Score = 281 bits (719), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 132/199 (66%), Positives = 159/199 (79%) Query: 1 MSKNFLEAVKGRRSIYAISKESPVSDAEIQEIVEAAVLHSPTSFNSQSSRAVVLLGDKHD 60 M+K+F A+K RR+ Y I+KE VSD +I+EIVE V H+P++FNSQ++R VVL G+ HD Sbjct: 1 MTKDFYTALKERRTYYGINKEVQVSDEKIKEIVEFTVKHTPSAFNSQTARLVVLFGEAHD 60 Query: 61 KVWDITADTLRKIVPTEQFEGTAQKLASFKAGYGTVLFFEDQAVVKHLQENFALYAENFP 120 K+WDIT +TLRK+V F GT QK+ SFKAGYGTVLFFED+A+VK LQE FA YAENFP Sbjct: 61 KLWDITTETLRKVVGDGDFSGTQQKMDSFKAGYGTVLFFEDEAIVKSLQEKFAAYAENFP 120 Query: 121 IWSNQSSGILQFVVWTAFAEAGLGASLQHYNPLIDDEVKATFDIPADWKLIAQMPFGKTV 180 IWS+Q+SG+ Q VVWT GLGASLQHYNPLIDDEVK +++PA+WKLIAQMPFG Sbjct: 121 IWSHQASGMHQLVVWTGLEAEGLGASLQHYNPLIDDEVKQEWNVPANWKLIAQMPFGNPT 180 Query: 181 TAPGEKEFQPIEERVKVIK 199 APGEKEFQP+EERVK K Sbjct: 181 AAPGEKEFQPLEERVKFHK 199 >C2U032.1 C2U032_BACCE Putative uncharacterized protein Length = 199 Score = 281 bits (719), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 132/199 (66%), Positives = 159/199 (79%) Query: 1 MSKNFLEAVKGRRSIYAISKESPVSDAEIQEIVEAAVLHSPTSFNSQSSRAVVLLGDKHD 60 M+K+F A+K RR+ Y I+KE VSD +I+EIVE V H+P++FNSQ++R VVL G+ HD Sbjct: 1 MTKDFYTALKERRTYYGINKEVQVSDEKIKEIVEFTVKHTPSAFNSQTARLVVLFGEAHD 60 Query: 61 KVWDITADTLRKIVPTEQFEGTAQKLASFKAGYGTVLFFEDQAVVKHLQENFALYAENFP 120 K+WDIT +TLRK+V F GT QK+ SFKAGYGTVLFFED+A+VK LQE FA YAENFP Sbjct: 61 KLWDITTETLRKVVGDGDFSGTQQKMDSFKAGYGTVLFFEDEAIVKSLQEKFAAYAENFP 120 Query: 121 IWSNQSSGILQFVVWTAFAEAGLGASLQHYNPLIDDEVKATFDIPADWKLIAQMPFGKTV 180 IWS+Q+SG+ Q VVWT GLGASLQHYNPLIDDEVK +++PA+WKLIAQMPFG Sbjct: 121 IWSHQASGMHQLVVWTGLEAEGLGASLQHYNPLIDDEVKQEWNVPANWKLIAQMPFGNPT 180 Query: 181 TAPGEKEFQPIEERVKVIK 199 APGEKEFQP+EERVK K Sbjct: 181 AAPGEKEFQPLEERVKFHK 199 >C2UXW4.1 C2UXW4_BACCE Putative uncharacterized protein Length = 200 Score = 281 bits (719), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 132/199 (66%), Positives = 160/199 (80%) Query: 1 MSKNFLEAVKGRRSIYAISKESPVSDAEIQEIVEAAVLHSPTSFNSQSSRAVVLLGDKHD 60 M+K+F A+K RR+ Y I+KE VSD +I+EIVE AV ++P++FNSQ++R VVL G+ HD Sbjct: 2 MTKDFYTALKERRTYYGINKEVQVSDEKIKEIVEFAVKYTPSAFNSQTARVVVLFGEAHD 61 Query: 61 KVWDITADTLRKIVPTEQFEGTAQKLASFKAGYGTVLFFEDQAVVKHLQENFALYAENFP 120 K+WDIT +TLRK+V F GT QK+ SFKAGYGTVLFFED+A+VK LQE FA YAENFP Sbjct: 62 KLWDITTETLRKVVGDGDFSGTQQKMDSFKAGYGTVLFFEDEAIVKSLQEKFAAYAENFP 121 Query: 121 IWSNQSSGILQFVVWTAFAEAGLGASLQHYNPLIDDEVKATFDIPADWKLIAQMPFGKTV 180 IWS+Q+SG+ Q VVWT GLGASLQHYNPLIDDEVK +++PA+WKLIAQMPFG Sbjct: 122 IWSHQASGMHQLVVWTGLEAEGLGASLQHYNPLIDDEVKTEWNVPANWKLIAQMPFGNPT 181 Query: 181 TAPGEKEFQPIEERVKVIK 199 APGEKEFQP+EERVK K Sbjct: 182 AAPGEKEFQPLEERVKFHK 200 >C3FMQ7.1 C3FMQ7_BACTB Putative uncharacterized protein Length = 199 Score = 281 bits (718), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 132/199 (66%), Positives = 160/199 (80%) Query: 1 MSKNFLEAVKGRRSIYAISKESPVSDAEIQEIVEAAVLHSPTSFNSQSSRAVVLLGDKHD 60 M+K+F A+K RR+ Y I+KE VSD +I+EIVE AV ++P++FNSQ++R VVL G+ HD Sbjct: 1 MTKDFYTALKERRTYYGINKEVQVSDEKIKEIVEFAVKYTPSAFNSQTARLVVLFGEAHD 60 Query: 61 KVWDITADTLRKIVPTEQFEGTAQKLASFKAGYGTVLFFEDQAVVKHLQENFALYAENFP 120 K+WDIT +TLRK+V F GT QK+ SFKAGYGTVLFFED+A+VK LQE FA YAENFP Sbjct: 61 KLWDITTETLRKVVGDGDFSGTQQKMDSFKAGYGTVLFFEDEAIVKSLQEKFAAYAENFP 120 Query: 121 IWSNQSSGILQFVVWTAFAEAGLGASLQHYNPLIDDEVKATFDIPADWKLIAQMPFGKTV 180 IWS+Q+SG+ Q VVWT GLGASLQHYNPLIDDEVK +++PA+WKLIAQMPFG Sbjct: 121 IWSHQASGMHQLVVWTGLEAEGLGASLQHYNPLIDDEVKTEWNVPANWKLIAQMPFGNPT 180 Query: 181 TAPGEKEFQPIEERVKVIK 199 APGEKEFQP+EERVK K Sbjct: 181 AAPGEKEFQPLEERVKFHK 199 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.132 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,167,042,311 Number of extensions: 45577036 Number of successful extensions: 115702 Number of sequences better than 1.0e-05: 476 Number of HSP's gapped: 115421 Number of HSP's successfully gapped: 476 Length of query: 199 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 70 Effective length of database: 1,845,385,268 Effective search space: 129176968760 Effective search space used: 129176968760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)