BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0175.0008.p (403 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D9R7.1 B1D9R7_9BACL PpiC-type peptidyl-prolyl cis-trans isomerase 311 9e-83 B3KGQ0.1 B3KGQ0_9BACI PpiC-type peptidyl-prolyl cis-trans isomerase 296 3e-78 A6CMQ7.1 A6CMQ7_9BACI Post-translocation molecular chaperone 192 5e-47 B0TBA8.1 B0TBA8_HELMI Ppic-type ppiase domain protein, putative 176 3e-42 Q2B212.1 Q2B212_9BACI Post-translocation molecular chaperone 176 4e-42 >B1D9R7.1 B1D9R7_9BACL PpiC-type peptidyl-prolyl cis-trans isomerase Length = 392 Score = 311 bits (796), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 161/292 (55%), Positives = 202/292 (69%), Gaps = 2/292 (0%) Query: 82 TGGRGWMXXXXXXXXXXXXXXXXQPFKKDDSKVAVATVNGTDISKAELYDKLVEAGGEAT 141 +GG+ W+ PF D AVATVNG I+K +LYD LVE GG++T Sbjct: 71 SGGKAWIAVSAILAIVLIIVLIKPPFGAGDK--AVATVNGAKITKDKLYDSLVEQGGKST 128 Query: 142 LQNLITKTLVDQEAKKANITVTDADIQAELEDLKTQFGGEEALNNALQQSSMTLDDLKKQ 201 L N+IT L+DQ A A +TVT+AD+ E+E+LK FG E+ N L Q MT+D L++ Sbjct: 129 LDNMITTELIDQAAADAKVTVTEADVDKEIENLKKSFGSEDEFNQTLAQYGMTVDSLRED 188 Query: 202 MPLQVEIRKLVEPKVKVTDEEISKYYEENKASFNQEEEVRASHILVKTKEEADAIVKQLA 261 +QV+IRK++EP+VKVTD++I YY+ NKAS + E++RASHILV TKEEA+ I+KQL Sbjct: 189 AEVQVKIRKILEPQVKVTDDDIKAYYDANKASMSTPEQIRASHILVATKEEAEDILKQLK 248 Query: 262 GGADFAALAKEKSADTGSKEKGGDLNFFKKGDMVPEFSAAAFKLKVGETSGAVKTDYGYH 321 GADFA LAKEKS DTG+K+ GGDLNFF KG M P F AAF LK GE SG V+T YGYH Sbjct: 249 AGADFATLAKEKSTDTGTKDNGGDLNFFGKGSMEPAFEDAAFALKKGELSGVVQTSYGYH 308 Query: 322 VIKVTDRKEAHNYSLAEKKEEITKKLKAQKVSEMSSTWLQELTAGAKITNTL 373 +IK TD K A +L EKKE+I +L QKVSE+SSTW+ +L A AKITNTL Sbjct: 309 IIKKTDEKAAVTPTLEEKKEDIKYQLVTQKVSELSSTWMADLKAKAKITNTL 360 >B3KGQ0.1 B3KGQ0_9BACI PpiC-type peptidyl-prolyl cis-trans isomerase Length = 390 Score = 296 bits (757), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 158/302 (52%), Positives = 203/302 (67%), Gaps = 1/302 (0%) Query: 72 DGTPPSSPASTGGRGWMXXXXXXXXXXXXXXXXQPFKKDDSKVAVATVNGTDISKAELYD 131 D PP+ G +GWM PF K A+A VN +I+K LYD Sbjct: 71 DEQPPADGGGNGSKGWMIASLVLAAALIVVLIVPPFAKGSGNEAIAKVNDVNITKDNLYD 130 Query: 132 KLVEAGGEATLQNLITKTLVDQEAKKANITVTDADIQAELEDLKTQFGGEEALNNALQQS 191 +LV GG+ TL ++IT+ L+ QE K +ITVTDAD+ E++ LK F EE N ALQQ+ Sbjct: 131 ELVSVGGKQTLNSMITEELIQQELKNKSITVTDADVNKEVDALKASFPSEEQFNMALQQN 190 Query: 192 SMTLDDLKKQMPLQVEIRKLVEPKVKVTDEEISKYYEENKASFNQEEEVRASHILVKTKE 251 MTLD+LK+Q QVE++KL+ K+KVTDEE+ + Y++NK SF E+VRASHILV+TKE Sbjct: 191 GMTLDNLKEQTKTQVELKKLMADKIKVTDEEVKEVYDQNKESFATPEQVRASHILVETKE 250 Query: 252 EADAIVKQLAGGADFAALAKEKSADTGSKEKGGDLNFFKKGDMVPEFSAAAFKLKVGETS 311 EA+AIVKQL GADFA +AKEK+ D +K+ GGDLNFF +G+M P F AAFKLK E S Sbjct: 251 EAEAIVKQLKEGADFATIAKEKNQD-ATKDTGGDLNFFGRGEMDPAFEEAAFKLKKDEIS 309 Query: 312 GAVKTDYGYHVIKVTDRKEAHNYSLAEKKEEITKKLKAQKVSEMSSTWLQELTAGAKITN 371 VK+ +GYH+IKVTDRKEA N +L +KKEEI +L+ QKV S+ ++QEL A ITN Sbjct: 310 EPVKSSFGYHIIKVTDRKEATNPTLEDKKEEIRSQLENQKVYAESTAYIQELKDKATITN 369 Query: 372 TL 373 TL Sbjct: 370 TL 371 >A6CMQ7.1 A6CMQ7_9BACI Post-translocation molecular chaperone Length = 313 Score = 192 bits (488), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 107/254 (42%), Positives = 154/254 (60%), Gaps = 3/254 (1%) Query: 107 FKKDDSKVAVATVNGTDISKAELYDKLVEAGGEATLQNLITKTLVDQEAKKANITVTDAD 166 F KD+ VA V ISK ELY LV+ GEA L LI +V+ E+ + I VTD + Sbjct: 50 FSKDE---VVAKVGKDSISKDELYTMLVDQYGEAALDTLIADKIVELESDEQKIKVTDGE 106 Query: 167 IQAELEDLKTQFGGEEALNNALQQSSMTLDDLKKQMPLQVEIRKLVEPKVKVTDEEISKY 226 I+ EL L +G EEA N AL S +L +K + + +KL++ +V +TD+++ +Y Sbjct: 107 IEEELHKLHESYGDEEAFNQALTSSGTSLQSVKDNIHSYLLTKKLLQDRVSITDDQVQEY 166 Query: 227 YEENKASFNQEEEVRASHILVKTKEEADAIVKQLAGGADFAALAKEKSADTGSKEKGGDL 286 +E NK SF Q+E+V ASHILV+ +E A + + L G DFA LA+E S DT + GG+L Sbjct: 167 FETNKDSFAQQEQVEASHILVENEETAKEVKEMLDNGEDFAQLAEEYSVDTSNAGSGGEL 226 Query: 287 NFFKKGDMVPEFSAAAFKLKVGETSGAVKTDYGYHVIKVTDRKEAHNYSLAEKKEEITKK 346 +F KG+MV EF AF +++ E S ++T++G+H+IKVTD+KEA L + KEEI + Sbjct: 227 GYFAKGEMVAEFEEKAFSMEIEEISNPIETEFGFHIIKVTDKKEAEEAVLEDHKEEIQEI 286 Query: 347 LKAQKVSEMSSTWL 360 L Q + WL Sbjct: 287 LYEQALQTEYPVWL 300 >B0TBA8.1 B0TBA8_HELMI Ppic-type ppiase domain protein, putative Length = 338 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 109/280 (38%), Positives = 160/280 (57%), Gaps = 22/280 (7%) Query: 116 VATVNGTDISKAEL-------YDKLVEAGG-----------EATLQNLITKTLVDQEAKK 157 VA+VNG IS+++L ++L +GG L+++I + L QEAKK Sbjct: 30 VASVNGETISRSDLDKRINRYKEELSRSGGADSKELMANLERQELEHMIDEMLFTQEAKK 89 Query: 158 ANITVTDADIQAELEDLKTQFGGEEALNNALQQSSMTLDDLKKQMPLQVEIRKL---VEP 214 NI V+D + AEL K QF + AL++ +T D+L + ++ L V Sbjct: 90 RNIEVSDGQVAAELAKEKQQFPSDAEFQEALKRYRLTEDELSGIIRTRLIFNGLYDAVTS 149 Query: 215 KVKVTDEEISKYYEENKASFNQEEEVRASHILVKTKEEADAIVKQLAGGADFAALAKEKS 274 ++++D ++ KYY +N F Q +V+ASHIL+KT+EEA AI+ +L GADFA LA +KS Sbjct: 150 DIQISDADVEKYYRDNPDKFKQNRQVKASHILLKTEEEAKAIIAELERGADFAQLAVQKS 209 Query: 275 ADTGSKEKGGDLNFFKKGDMVPEFSAAAFKLKVGETSGA-VKTDYGYHVIKVTDRKEAHN 333 D+ + + GDL +F+ DMV EFS AAF +K GETS VK+++GYHVI+V D KEA Sbjct: 210 TDSTAAQNKGDLGYFQAEDMVKEFSDAAFSMKKGETSRTPVKSNFGYHVIRVEDIKEARQ 269 Query: 334 YSLAEKKEEITKKLKAQKVSEMSSTWLQELTAGAKITNTL 373 E K++I L A + E +W ++ A AKI L Sbjct: 270 QRFDEVKDQIRVDLGADRKQERFESWFADVKAQAKIERKL 309 >Q2B212.1 Q2B212_9BACI Post-translocation molecular chaperone Length = 293 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 103/246 (41%), Positives = 152/246 (61%) Query: 115 AVATVNGTDISKAELYDKLVEAGGEATLQNLITKTLVDQEAKKANITVTDADIQAELEDL 174 AVA+V I K ELY LV+ G+ L L+T +++ EAKK +T+++ + + EL++L Sbjct: 33 AVASVGSESIKKEELYSLLVKQYGDEALDALVTDKIIEMEAKKEKVTISNKEKEEELKNL 92 Query: 175 KTQFGGEEALNNALQQSSMTLDDLKKQMPLQVEIRKLVEPKVKVTDEEISKYYEENKASF 234 K +GGEE AL+QS +T + + + ++ KL+EP++ + ++EI Y+EENK F Sbjct: 93 KESYGGEEGFKAALEQSGVTEAGIAEDIEKYLKTEKLLEPRIDLKEDEIKAYFEENKDQF 152 Query: 235 NQEEEVRASHILVKTKEEADAIVKQLAGGADFAALAKEKSADTGSKEKGGDLNFFKKGDM 294 Q+E+V+ASHILV+ + A + +L G +FA LAKE S D + E GG+L +F KG+M Sbjct: 153 AQQEQVKASHILVEDEATAKEVKSKLDKGEEFADLAKEYSTDASNAESGGELGYFGKGEM 212 Query: 295 VPEFSAAAFKLKVGETSGAVKTDYGYHVIKVTDRKEAHNYSLAEKKEEITKKLKAQKVSE 354 F AAF+LK E SG VKTDYGYH+IKV D+KEA + KE K L +++ Sbjct: 213 EAAFEEAAFELKANEISGPVKTDYGYHIIKVEDKKEAKEAVYEDSKEAAKKALFDERMQT 272 Query: 355 MSSTWL 360 WL Sbjct: 273 EYYNWL 278 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.305 0.123 0.329 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,963,825,612 Number of extensions: 73022237 Number of successful extensions: 193329 Number of sequences better than 1.0e-05: 2806 Number of HSP's gapped: 190063 Number of HSP's successfully gapped: 3142 Length of query: 403 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 265 Effective length of database: 1,760,596,133 Effective search space: 466557975245 Effective search space used: 466557975245 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (22.0 bits) S2: 132 (55.5 bits)