BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0175.0002.p (346 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGP3.1 B3KGP3_9BACI Putative uncharacterized protein 422 e-116 B1D9T4.1 B1D9T4_9BACL Putative uncharacterized protein 308 6e-82 A4IKK9.1 A4IKK9_GEOTN Integral membrane protein 176 3e-42 B7GIJ8.1 B7GIJ8_ANOFW Uncharacterized conserved membrane protein 174 1e-41 C3J741.1 C3J741_9BACI Putative uncharacterized protein 170 2e-40 >B3KGP3.1 B3KGP3_9BACI Putative uncharacterized protein Length = 352 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 217/344 (63%), Positives = 272/344 (79%), Gaps = 3/344 (0%) Query: 3 LAFGARILKTGLAVTLALYLSALLQFSSPVGAAIAAIFAMQPSIYRSWRYFLDQIQTSTI 62 +AFGAR+ KTGLAVTLALYL+ L F SPV AAIAAIFAMQPSIYRSWRYFLDQ+QTST+ Sbjct: 1 MAFGARMFKTGLAVTLALYLAMLFDFKSPVVAAIAAIFAMQPSIYRSWRYFLDQLQTSTL 60 Query: 63 XXXXXXXXXXXXSNEPIAVGLVCILVIMISMKMKRADTIGLTLVTVISVMEASGQWEFAL 122 SN+PI+VGLVCILVIMI MK+K +TIGLTLVTVISVMEASGQW+FAL Sbjct: 61 GAILAMLGGYFLSNQPISVGLVCILVIMICMKLKMGETIGLTLVTVISVMEASGQWDFAL 120 Query: 123 TRFLLTLTGXXXXXXXXXXXXPPQPRKQYIQQIENVFGSLSLLLRTAVSHEMKESVFRDE 182 RF+LT+ G PP+P++QYI +I VFG +SLLLRTA+SHEMK+SV+R E Sbjct: 121 NRFILTIIGIISAFLINILVFPPKPKEQYITRIHIVFGKMSLLLRTAISHEMKDSVYRAE 180 Query: 183 KNALEASIRSLADKYALFEEEQKQLRRAKYSQTRQMVVYKNLLASLQKGFEVLEAVDRHY 242 K LE++I+SL+DKY LFEEEQK+L+RAKYSQ RQ+VVYK LL SL+KG+EVL+AV+ HY Sbjct: 181 KKELESAIKSLSDKYNLFEEEQKKLKRAKYSQARQLVVYKQLLQSLRKGYEVLDAVENHY 240 Query: 243 FQAERTGKTDELFDRHLEQLIKYHETILLKFEDKLKPXXXXDIDPLAEDNDRFLQAAING 302 FQA+R+ + DE FD +LE+L+KYHE IL KFEDKLKP + + +AE+N+ F++ + G Sbjct: 241 FQADRSDEIDEQFDHNLERLMKYHEHILWKFEDKLKP-NEDEAETMAENNEAFMEQVMCG 299 Query: 303 YDAEKAGQLRLSVVAAAIYDYGYQLERLDKVADQINRLSAEEKE 346 G LRL+VVAA++YDYGYQL+RL++VADQI+R+ ++KE Sbjct: 300 -PGSNPGGLRLAVVAASMYDYGYQLDRLNRVADQISRV-VDDKE 341 >B1D9T4.1 B1D9T4_9BACL Putative uncharacterized protein Length = 357 Score = 308 bits (788), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 159/346 (45%), Positives = 219/346 (63%), Gaps = 5/346 (1%) Query: 3 LAFGARILKTGLAVTLALYLSALLQFSSPVGAAIAAIFAMQPSIYRSWRYFLDQIQTSTI 62 + GAR+LKTG+AV LA+YLS + F+SP+ +AAI +QPSIYRSW+ LDQ QT+ + Sbjct: 1 MTIGARVLKTGMAVALAIYLSGMFGFASPLITTVAAILTIQPSIYRSWQQVLDQFQTNLL 60 Query: 63 XXXXXXXXXXXXSNEPIAVGLVCILVIMISMKMKRADTIGLTLVTVISVMEASGQ-WEFA 121 PIAVGLVCILVI++S+++K TIG+TLVTV+++MEA GQ A Sbjct: 61 GAAMALAAMKLFGQTPIAVGLVCILVILVSIRLKMETTIGVTLVTVVAIMEAHGQVTTVA 120 Query: 122 LTRFLLTLTGXXXXXXXXXXXXPPQPRKQYIQQIENVFGSLSLLLRTAVSHEMKESVFRD 181 L RFL+ L G PP+PRKQ+ +Q+ + F +SLLLRTA+S+EMKE V+R Sbjct: 121 LERFLMVLAGMGAAFTVNVLVFPPRPRKQFTEQVHHAFSEMSLLLRTAISNEMKEQVYRK 180 Query: 182 EKNALEASIRSLADKYALFEEEQKQLRRAKYSQTRQMVVYKNLLASLQKGFEVLEAVDRH 241 EK L +R L D Y LFEEE+K L R K S RQ++V K ++ +LQKG ++LE V+ H Sbjct: 181 EKEKLHKRLRKLEDSYNLFEEERKILARTKISHARQLLVSKQMIKALQKGSDLLEVVEEH 240 Query: 242 YFQAERTGKTDELFDRHLEQLIKYHETILLKFEDKLKPXXXXDIDPLAEDNDRFLQAAIN 301 YF + G FDR +E L KYHE+I+LK E+K+KP ++P E+ + L A + Sbjct: 241 YFSVPKAGDWAARFDRQIEDLTKYHESIVLKIENKMKP--NMSLEP-GEEREARLVAELT 297 Query: 302 GYDAEKAGQL-RLSVVAAAIYDYGYQLERLDKVADQINRLSAEEKE 346 Y E + RL VA+A+++Y Y L RL+K+ D I R E +E Sbjct: 298 DYVREDPDEHKRLIFVASALFEYAYHLRRLEKLVDHIQRPHGEAEE 343 >A4IKK9.1 A4IKK9_GEOTN Integral membrane protein Length = 359 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 111/348 (31%), Positives = 181/348 (52%), Gaps = 7/348 (2%) Query: 3 LAFGARILKTGLAVTLALYLSALLQFSSPVGAAIAAIFAMQPSIYRSWRYFLDQIQTSTI 62 + GARI KTG+AVTLAL+L+AL F SPV A I+A+FAMQP+IYRS+ ++Q+Q + I Sbjct: 1 MKLGARIFKTGIAVTLALFLAALFHFPSPVFAGISAVFAMQPTIYRSYLSLIEQVQANVI 60 Query: 63 XXXXXXXXXXXXSNEPIAVGLVCILVIMISMKMK-RADTIGLTLVTVISVMEASGQ--WE 119 +P+ VGL ++VI + +KM+ + TI + LVTVI++ME + + E Sbjct: 61 GALFAITAVLILGRDPLIVGLTLMIVIALCLKMRLESSTISVALVTVIAIMEYTERQFIE 120 Query: 120 FALTRFLLTLTGXXXXXXXXXXXXPPQPRKQYIQQIENVFGSLSLLLRTAVSHEMKESVF 179 FA RFL + G PP+ K+ ++I ++ +R Sbjct: 121 FAAIRFLTIMLGIFAAFLVNLIFLPPKYEKKLYEKISGETETILKWIRLHKQQVADHHHL 180 Query: 180 RDEKNALEASIRSLADKYALFEEEQKQLRRAKYSQTRQMVVYKNLLASLQKGFEVLEAVD 239 +DE L + L Y +++EE+ RR ++ ++R++V+Y+ ++A+ + VL+ + Sbjct: 181 KDEIETLLDEMTKLKHLYFMYKEERTYFRRQRFQKSRKLVLYRQMIAAADRALSVLKWLH 240 Query: 240 RHYFQAER-TGKTDELFDRHLEQLIKYHETILLKFEDKLKPXXXXD-IDPLAEDNDRFLQ 297 R + R + + HL L+ YHE +LLKF K KP + + +R Sbjct: 241 RLENELGRLPAELHQAISLHLSHLLDYHEQLLLKFIHKAKPLPHNKRAEEIYRQRERL-- 298 Query: 298 AAINGYDAEKAGQLRLSVVAAAIYDYGYQLERLDKVADQINRLSAEEK 345 AA + + + RL + AI DYG +LE LDK+ D + +E+ Sbjct: 299 AATFYSEGQLPAEYRLFSLIGAIIDYGDRLEHLDKLIDSFHHYHYDEE 346 >B7GIJ8.1 B7GIJ8_ANOFW Uncharacterized conserved membrane protein Length = 360 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 108/352 (30%), Positives = 181/352 (51%), Gaps = 10/352 (2%) Query: 1 MDLAFGARILKTGLAVTLALYLSALLQFSSPVGAAIAAIFAMQPSIYRSWRYFLDQIQTS 60 M + GAR+ KTG+A+T AL L+ LLQ SPV A I+A+FAMQP+IYRS+ ++Q+Q + Sbjct: 1 MTMRLGARVFKTGIAITFALVLAKLLQLPSPVFAGISAVFAMQPTIYRSYLSLIEQVQAN 60 Query: 61 TIXXXXXXXXXXXXSNEPIAVGLVCILVIMISMKMKRADTIGLTLVTVISVMEASGQW-- 118 I ++P +GL ILVI + ++++ +I + LVTVI++ME + Q Sbjct: 61 VIGAIFAIVFTLIFGHDPFIIGLTAILVIALFLRLRLESSISVALVTVIAIMEYTEQHFI 120 Query: 119 EFALTRFLLTLTGXXXXXXXXXXXXPPQPRKQYIQQIENVFGSLSLLLRTAVSHEMKESV 178 EFAL RF + G PP+ K+ +I + +R V H + + Sbjct: 121 EFALIRFSTIMLGVLAAFVVNLVFLPPKYEKKLYTKIVEYTEHILKWIRMNVRHASEHHL 180 Query: 179 FRDEKNALEASIRSLADKYALFEEEQKQLRRAKYSQTRQMVVYKNLLASLQKGFEVLEAV 238 +++ L+ ++ L Y L++EE+ R+ KYS++R++V+Y+ ++ + + E L+ + Sbjct: 181 LKEDIEKLKENMMKLDQLYLLYKEERTYFRKHKYSKSRKLVLYRQMIVATNRALETLKLL 240 Query: 239 DRHYFQAERTGKTDEL---FDRHLEQLIKYHETILLKFEDKLKPXXXXDIDPLAEDNDR- 294 R + E EL L+ L+ YH+ ILLKF K+K A + Sbjct: 241 HR--LENELAHTPAELQNAIKNELDCLLNYHDQILLKFIGKVKSDPQSQFVTEACSGKKG 298 Query: 295 FLQAAINGYDAEKAGQ--LRLSVVAAAIYDYGYQLERLDKVADQINRLSAEE 344 + + +N Y + Q +L + AI +Y +QLE LD + + + EE Sbjct: 299 LIHSFLNHYAEQSIKQENYQLFPLIGAIIEYSHQLEHLDTLIESFHHYHKEE 350 >C3J741.1 C3J741_9BACI Putative uncharacterized protein Length = 359 Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 111/345 (32%), Positives = 176/345 (51%), Gaps = 13/345 (3%) Query: 3 LAFGARILKTGLAVTLALYLSALLQFSSPVGAAIAAIFAMQPSIYRSWRYFLDQIQTSTI 62 + GARI KTG+AV LAL+L+ L QF SP A I+A+FAMQP+IYRS+ ++Q+Q + I Sbjct: 1 MKLGARIFKTGIAVALALFLATLFQFPSPSFAGISAVFAMQPTIYRSYLSLIEQVQANVI 60 Query: 63 XXXXXXXXXXXXSNEPIAVGLVCILVIMISMKMK-RADTIGLTLVTVISVMEASGQW--E 119 +P+ VGL ++VI + +KM+ + TI + LVTVI++ME + + E Sbjct: 61 GALFAIAAVFILGRDPLVVGLTLMIVIALCLKMRLESSTISVALVTVIAIMEYTDRQFIE 120 Query: 120 FALTRFLLTLTGXXXXXXXXXXXXPPQPRKQYIQQI----ENVFGSLSLLLRTAVSHEMK 175 FA RFL + G PP+ K+ ++I E + + L + A H Sbjct: 121 FAAIRFLTMMLGIFAAFVVNLIFLPPKYEKKVYEKISEETEAILKWIRLHKQQAADHHH- 179 Query: 176 ESVFRDEKNALEASIRSLADKYALFEEEQKQLRRAKYSQTRQMVVYKNLLASLQKGFEVL 235 ++E A + L Y +++EE+ RR ++ ++R++V+Y+ ++A+ + VL Sbjct: 180 ---LKEEIEARHEEMTKLEHLYFMYKEERTYFRRQRFQKSRKLVLYRQMIAAADRALSVL 236 Query: 236 EAVDRHYFQAER-TGKTDELFDRHLEQLIKYHETILLKFEDKLKPXXXXDIDPLAEDNDR 294 + + R + R + + HL L+ YHE +LLKF K KP Sbjct: 237 KWLHRLENEFSRLPAELRQAVCLHLGCLLDYHEQLLLKFIHKAKPLPHSRRAEEIHHQRE 296 Query: 295 FLQAAINGYDAEKAGQLRLSVVAAAIYDYGYQLERLDKVADQINR 339 L +A D + G RL + AI DYG +LE LDK+ D + Sbjct: 297 QLTSAFYA-DGQPPGDYRLFSLIGAIMDYGDRLEHLDKLIDSYHH 340 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.135 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,582,968,673 Number of extensions: 54324911 Number of successful extensions: 162041 Number of sequences better than 1.0e-05: 151 Number of HSP's gapped: 161743 Number of HSP's successfully gapped: 151 Length of query: 346 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 210 Effective length of database: 1,779,438,163 Effective search space: 373682014230 Effective search space used: 373682014230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)