BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0175.0001.p (785 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGP2.1 B3KGP2_9BACI ATP-dependent DNA helicase replicase 1113 0.0 B1DFM1.1 B1DFM1_9BACL UvrD/REP helicase 842 0.0 C3B4I7.1 C3B4I7_BACMY UvrD/REP helicase 815 0.0 C3AMA2.1 C3AMA2_BACMY UvrD/REP helicase 815 0.0 C3BL84.1 C3BL84_9BACI UvrD/REP helicase 812 0.0 >B3KGP2.1 B3KGP2_9BACI ATP-dependent DNA helicase replicase Length = 776 Score = 1113 bits (2880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 534/775 (68%), Positives = 626/775 (80%), Gaps = 2/775 (0%) Query: 1 MEKHDSEWEEEQNRVNGITKLLSAHIRRLSDELGLHRSDVVDMRKDFWEEVTVNFSSPDD 60 M D +W+EEQ RV +T + I +L +G R V+DMRKDFW+EVTVNFS+PDD Sbjct: 1 MAISDQDWKEEQARVTEVTAKIGNKISQLEASVGDIREVVIDMRKDFWDEVTVNFSNPDD 60 Query: 61 LGETSTSLRQQAQILNERERHHLQSSKALKKYRKLVVSPYFGRIDFKETADAEAERIYLG 120 LGETST+LRQQ+Q+L ERE HLQSSK LKKYRKLV SPYFGRIDF+E AE E IYLG Sbjct: 61 LGETSTNLRQQSQVLAEREHAHLQSSKLLKKYRKLVESPYFGRIDFQEDGTAETETIYLG 120 Query: 121 IGSLMEDN-GSFLIYDWRAPISSLYYDGAPGPAAYETPGGLVSGTMELKRQFVIDNGTIE 179 GS +++ +FL+YDWRAPISSLYYDGAPGPA YETP G V G M LKRQFVI NG I+ Sbjct: 121 TGSFLDEKMETFLVYDWRAPISSLYYDGAPGPAQYETPSGTVKGEMLLKRQFVIHNGEIK 180 Query: 180 VMFDTGVTIGDELLQQVLSHSADDRMKSIVATIQKEQNAIIRNDRSRMLVVQGAAGSGKT 239 V+FDTGVTIGDELLQQVLSHSADDRMKSIVATIQKEQNA+IRND++RML+VQGAAGSGKT Sbjct: 181 VLFDTGVTIGDELLQQVLSHSADDRMKSIVATIQKEQNAVIRNDKTRMLIVQGAAGSGKT 240 Query: 240 SAALQRVAYLLYKYREVLQADQMLLFSPNPLFNSYVSTVLPELGEENMQQTTFQMYLEHR 299 SAALQRVAYLLYKYRE L+ADQM+LFSPNPLFNSYVSTVLPELGE+NMQQTTFQ YLEHR Sbjct: 241 SAALQRVAYLLYKYRETLRADQMILFSPNPLFNSYVSTVLPELGEDNMQQTTFQSYLEHR 300 Query: 300 LGQEFELEDVFSQTESLLNAPEGPEAATRRAGITYKSSVAFLDVIRRYVNLLEHEGMLFK 359 LG+EF+LEDVF+QTE+LLNA + P R I+YKSS A+LD IRRY LLE GMLFK Sbjct: 301 LGKEFDLEDVFTQTETLLNADDSPRYRARLESISYKSSGAYLDTIRRYKELLEKGGMLFK 360 Query: 360 PLVFQGRAVVSKEEMQQKFYSFDPGIKLANRIDLMTGWLLKKIAAYSVEEREAQWVEDQI 419 P+VFQG+ +VS EEM +FY +D +KLA RIDLM W+LK+++ ++ E++A WVE+QI Sbjct: 361 PVVFQGKVIVSSEEMASQFYGYDSAVKLAGRIDLMKEWMLKRLSEFAQTEKDAPWVEEQI 420 Query: 420 ELLDSSDYQRAYNMLRRKGGGRNDSFDDFDMEKTVLARYIVSQRLKPLRGWTKRGRFVDV 479 +LLD+ DYQRA+ +RRK + D+FDDFD EK VLA+ +VS RLKPLR W KR R+VDV Sbjct: 421 QLLDTEDYQRAFQTMRRKQNRKADTFDDFDKEKDVLAKMVVSSRLKPLRRWIKRFRYVDV 480 Query: 480 KGLYSLLFADRELMER-LGNGRELPEAWDAICRQTVASLSRNELAYEDATPFLYLKELSQ 538 KG+Y L+ D L R GN LPE WD IC TVASL L YEDATPFLYLKEL Q Sbjct: 481 KGMYRKLYTDESLFRRAAGNLETLPEHWDEICNLTVASLDDKALLYEDATPFLYLKELLQ 540 Query: 539 GFRTNTQIRHVIVDEVQDYSPFQLEFMRRLFPRAKMTVLGDLNQAIYAQGEVLGDLGGLV 598 GFRTNT IRHVIVDEVQDYS FQLEF++RLFPRAKMTVLGDLNQAIYA GE LG L LV Sbjct: 541 GFRTNTSIRHVIVDEVQDYSAFQLEFLKRLFPRAKMTVLGDLNQAIYAHGEALGSLENLV 600 Query: 599 SVYGRENTEVISLTRSYRSTYEIVEFTRSMIPGGEKIVPFNRRGESPLLTVVDNEEGLLG 658 S+YG+E+TEVI+LT+SYRSTYEIV FTR MIPGGE+IVPFNR+GE+P + V++EE L G Sbjct: 601 SLYGKEDTEVINLTQSYRSTYEIVNFTRQMIPGGERIVPFNRQGEAPRVVRVNDEEELHG 660 Query: 659 SIEQDVLNLHSMGYHYVAVICKTAEESARVHAKLQNRLPVRLVTKDTPNFQKGTLVLPAY 718 +I D+ LH G+ YVAVIC+T EES RVH +L + RL+TK TP F+KGTLV+PAY Sbjct: 661 AIVSDIRELHEQGFQYVAVICRTEEESRRVHQQLSADISARLITKTTPAFEKGTLVVPAY 720 Query: 719 LAKGVEFDAVIIYDGSEAKYGRESERKLFYTACTRAMHLLHIYSLGQPNHFLPAE 773 LAKGVEFDAVIIY+G+E Y RE++RKLFYTACTRAMH LH+Y +G+ +HF+ + Sbjct: 721 LAKGVEFDAVIIYNGAEDVYHRETDRKLFYTACTRAMHKLHVYHIGEKSHFISGQ 775 >B1DFM1.1 B1DFM1_9BACL UvrD/REP helicase Length = 772 Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/772 (54%), Positives = 547/772 (70%), Gaps = 13/772 (1%) Query: 4 HDSEWEEEQNRVNGITKLLSAHIRRLSDELGLHRSDVVDMRKDFWEEVTVNFSSPDDLGE 63 D + EEQ RV+ + +L+ + +L R D+VD+RK+FW++VT+NF + E Sbjct: 2 QDEQRMEEQKRVDRVMRLIREQLGKLLQSSSGMREDIVDIRKNFWDDVTLNFEDAAEAAE 61 Query: 64 TSTSLRQQAQILNERERHHLQSSKALKKYRKLVVSPYFGRIDFKETADAEAERIYLGIGS 123 ++ SL+QQA++L ERE H +S+ +K RKL +PYFGR+DF E +E E+IYLG+GS Sbjct: 62 SAASLKQQAEVLAEREHSHRHASQQVKLLRKLEQTPYFGRVDFIENGSSEEEKIYLGVGS 121 Query: 124 LMEDNGS-FLIYDWRAPISSLYYDGAPGPAAYETPGGLVSGTMELKRQFVIDNGTIEVMF 182 +++++GS +LIYDWRAP+SSLYYD +PG A Y+TP G + G M LKRQ+VI G I MF Sbjct: 122 MLDESGSDYLIYDWRAPVSSLYYDYSPGTAQYDTPTGSIEGQMTLKRQYVIRRGQIAGMF 181 Query: 183 DTGVTIGDELLQQVLSHSADDRMKSIVATIQKEQNAIIRNDRSRMLVVQGAAGSGKTSAA 242 DTGVTIGDELLQ+VL +D +MKSIVATIQ+EQN IIRN+R+R+L+VQGAAGSGKTSAA Sbjct: 182 DTGVTIGDELLQEVLGKHSDAQMKSIVATIQREQNQIIRNERARLLIVQGAAGSGKTSAA 241 Query: 243 LQRVAYLLYKYREVLQADQMLLFSPNPLFNSYVSTVLPELGEENMQQTTFQMYLEHRLGQ 302 LQRVAYLLY+YR LQADQ++LFSPNP+FNSYV+TVLPELGE+NMQQTT+Q YLEHR+GQ Sbjct: 242 LQRVAYLLYRYRGSLQADQIVLFSPNPMFNSYVATVLPELGEQNMQQTTYQQYLEHRIGQ 301 Query: 303 EFELEDVFSQTESLLNAPEGPEAATRRAGITYKSSVAFLDVIRRYVNLLEHEGMLFKPLV 362 F LED F+Q E L + + P+ TR A I +KS +F+ VI RYV+ L G+LFK + Sbjct: 302 SFALEDPFAQMEYTLGSMDDPDYETRIASIRHKSGASFMKVIERYVDTLGDSGLLFKAIK 361 Query: 363 FQGRAVVSKEEMQQKFYSFDPGIKLANRIDLMTGWLLKKIAAYSVEEREAQWVEDQIELL 422 F+GR +++ E ++Q FYS D + NR + WLLK++ S EER+ QWVED++ELL Sbjct: 362 FRGRKLITAEAIEQHFYSLDKSFTIPNRFKMTADWLLKELTRLSKEERKKQWVEDEMELL 421 Query: 423 DSSDYQRAYNMLRRKGGGRNDSFDDFDMEKTVLARYIVSQRLKPLRGWTKRGRFVDVKGL 482 D Y A+N L RK +DSFDDFD EK VLA IV +R K LR K+ RFVD + L Sbjct: 422 DKEAYIHAFNELNRKERYTSDSFDDFDREKDVLATMIVQERFKRLRSRVKKLRFVDTQTL 481 Query: 483 YSLLFADRELMERLGNGREL---PEAWDAICRQTVASLSRNELAYEDATPFLYLKELSQG 539 Y L+ G L PE W+AI R T+ L+R L YEDATP+LY+K+L +G Sbjct: 482 YLRLYES-------GQAPWLESRPE-WEAIRRLTLDQLNRGILTYEDATPYLYMKDLIEG 533 Query: 540 FRTNTQIRHVIVDEVQDYSPFQLEFMRRLFPRAKMTVLGDLNQAIYAQGEVLGDLGGLVS 599 F+TNT +RH+ +DE QDYSPFQ +M+R+FP AKMT LGDLNQ+I+A + L Sbjct: 534 FQTNTSVRHLFIDEAQDYSPFQFYYMKRVFPMAKMTALGDLNQSIFAHAALGNGFDPLGE 593 Query: 600 VYGRENTEVISLTRSYRSTYEIVEFTRSMIPGGEKIVPFNRRGESPLLTVVDNEEGLLGS 659 +Y E TE I L+RSYRST +IVEFT MI GG +IVPFNR G+ P +T V +E L G Sbjct: 594 LYSNEETETIVLSRSYRSTKQIVEFTSGMIEGGSRIVPFNRNGDEPTVTAVADESELNGM 653 Query: 660 IEQDVLNLHSMGYHYVAVICKTAEESARVHAKLQNRLP-VRLVTKDTPNFQKGTLVLPAY 718 I + + L G + +AVICKTAEES + L+ P +RL+ K+T F+ GT+V+P+Y Sbjct: 654 IAERIRRLQEEGANSIAVICKTAEESRTAYEALEQHCPGMRLIEKETVTFENGTVVIPSY 713 Query: 719 LAKGVEFDAVIIYDGSEAKYGRESERKLFYTACTRAMHLLHIYSLGQPNHFL 770 LAKGVEFDAVI+Y+ S + YGRESERKLFYTACTRAMH LH+Y L +P FL Sbjct: 714 LAKGVEFDAVILYNASSSVYGRESERKLFYTACTRAMHELHLYYLSEPTPFL 765 >C3B4I7.1 C3B4I7_BACMY UvrD/REP helicase Length = 782 Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/773 (51%), Positives = 537/773 (69%), Gaps = 3/773 (0%) Query: 1 MEKHDSEWEEEQNRVNGITKLLSAHIRRLSDELGLHRSDVVDMRKDFWEEVTVNFSSPDD 60 MEK EW++EQ+RV + + HI L DVV +RK FW++VTVN + ++ Sbjct: 1 MEKTGQEWKQEQHRVKEVVGKIEKHIDTLEQYTSAATKDVVQIRKHFWDDVTVNVDNTEE 60 Query: 61 LGETSTSLRQQAQILNERERHHLQSSKALKKYRKLVVSPYFGRIDFKETADAEAERIYLG 120 ET+ S++QQA++L+ERE+ H + LK ++L SPYFGR+DF E + + IYLG Sbjct: 61 AIETAASIKQQAELLSEREQSHRHAYNQLKGLQRLQQSPYFGRVDFLEDGEKSEDAIYLG 120 Query: 121 IGSLM-EDNGSFLIYDWRAPISSLYYDGAPGPAAYETPGGLVSGTMELKRQFVIDNGTIE 179 I S E FL+YDWRAPISSLYYD + G A YE P +SG M LKRQ+VI NG I Sbjct: 121 IHSFYDEQTEQFLVYDWRAPISSLYYDYSVGRAKYEAPNDTISGEMTLKRQYVIRNGRIV 180 Query: 180 VMFDTGVTIGDELLQQVLSHSADDRMKSIVATIQKEQNAIIRNDRSRMLVVQGAAGSGKT 239 MFDTGVTIGD+LLQ+VL ++A+ +MKSIV+TIQKEQN IIRN++SR+LVVQGAAGSGKT Sbjct: 181 SMFDTGVTIGDKLLQEVLGNNANTQMKSIVSTIQKEQNQIIRNEKSRLLVVQGAAGSGKT 240 Query: 240 SAALQRVAYLLYKYREVLQADQMLLFSPNPLFNSYVSTVLPELGEENMQQTTFQMYLEHR 299 SAALQRVAYLLY+YRE L ADQ++LFSPN +FNSYVSTVLPELGE+NM+QTTFQ YLE Sbjct: 241 SAALQRVAYLLYRYRETLHADQIVLFSPNSMFNSYVSTVLPELGEDNMKQTTFQEYLERH 300 Query: 300 LGQEFELEDVFSQTESLLNAPEGPEAATRRAGITYKSSVAFLDVIRRYVNLLEHEGMLFK 359 + ++FELED F+Q E +L E TR GI YK+S F++V+ +YV+ L+ EGMLFK Sbjct: 301 IDKKFELEDPFTQMEYVLTRMEEKSYKTRLEGIRYKASSDFIEVVDQYVSYLKREGMLFK 360 Query: 360 PLVFQGRAVVSKEEMQQKFYSFDPGIKLANRIDLMTGWLLKKIAAYSVEEREAQWVEDQI 419 + F+G ++SKE+++++FY FDP I++ NRI L++ WLLK++ ER+ WVE+++ Sbjct: 361 DIKFRGEVLISKEQIKEQFYKFDPSIRIPNRIKLISEWLLKELKEQEKIERKKLWVEEEV 420 Query: 420 ELLDSSDYQRAYNMLRRKGGGRNDSFDDFDMEKTVLARYIVSQRLKPLRGWTKRGRFVDV 479 +LLD Y + + L+++ + +FDDF+ E+ +LA +V + KPLR ++ +F+ Sbjct: 421 QLLDKETYAKVHQKLQKRQEYSDGTFDDFEREQNMLAAIVVKKYFKPLRRRVEKLQFIHT 480 Query: 480 KGLYSLLFADRELMERLGNGRELPEAWDAICRQTVASLSRNELAYEDATPFLYLKELSQG 539 LY LF D + ++L ELP+ WD IC +T+ + +AYEDATP+LY+K+ + Sbjct: 481 PALYMQLFKDPQFAKQLVEENELPQKWDEICGETIEKMQGFYMAYEDATPYLYMKDQLEE 540 Query: 540 FRTNTQIRHVIVDEVQDYSPFQLEFMRRLFPRAKMTVLGDLNQAIYAQGEVLGDLGGLVS 599 + NT ++H+ +DE QDYS FQ F++R+FP KMT+LGD NQ IY + L + Sbjct: 541 LQKNTSVQHIFIDEAQDYSAFQYAFLKRIFPHTKMTILGDFNQTIYEHASE-NEFSQLST 599 Query: 600 VYGRENTEVISLTRSYRSTYEIVEFTRSMIPGGEKIVPFNRRGESPLLTVVDNEEGLLGS 659 +YG E +E I LTRSYRST +I+EFT+ +I G E I PF R G+ P++T V E Sbjct: 600 LYGEELSEKIVLTRSYRSTKQIIEFTKQLIDGDE-IEPFQREGKQPIITEVKEGEAHHKK 658 Query: 660 IEQDVLNLHSMGYHYVAVICKTAEESARVHAKLQNRLPVRLVTKDTPNFQKGTLVLPAYL 719 I + L G+ +AVICKTAEES + LQ LPVRL+ K+T +F +G L++P+YL Sbjct: 659 IVDQIEQLKQSGHRTIAVICKTAEESEEAYYALQTSLPVRLIKKETSSFDEGILIIPSYL 718 Query: 720 AKGVEFDAVIIYDGSEAKYGRESERKLFYTACTRAMHLLHIYSLGQPNHFLPA 772 +KGVEFDAVIIYD SE KY RESERKLFYTACTRAMH L+IYS+G+ N FL + Sbjct: 719 SKGVEFDAVIIYDASEEKYSRESERKLFYTACTRAMHELYIYSVGEMNEFLQS 771 >C3AMA2.1 C3AMA2_BACMY UvrD/REP helicase Length = 782 Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/773 (51%), Positives = 537/773 (69%), Gaps = 3/773 (0%) Query: 1 MEKHDSEWEEEQNRVNGITKLLSAHIRRLSDELGLHRSDVVDMRKDFWEEVTVNFSSPDD 60 MEK EW++EQ+RV + + HI L DVV +RK FW++VTVN + ++ Sbjct: 1 MEKTGQEWKQEQHRVKEVVGKIEKHIDTLEQYTSAATKDVVQIRKHFWDDVTVNVDNTEE 60 Query: 61 LGETSTSLRQQAQILNERERHHLQSSKALKKYRKLVVSPYFGRIDFKETADAEAERIYLG 120 ET+ S++QQA++L+ERE+ H + LK ++L SPYFGR+DF E + + IYLG Sbjct: 61 AIETAASIKQQAELLSEREQSHRHAYNQLKGLQRLQQSPYFGRVDFLEDGEKSEDAIYLG 120 Query: 121 IGSLM-EDNGSFLIYDWRAPISSLYYDGAPGPAAYETPGGLVSGTMELKRQFVIDNGTIE 179 I S E FL+YDWRAPISSLYYD + G A YE P +SG M LKRQ+VI NG I Sbjct: 121 IHSFYDEQTEQFLVYDWRAPISSLYYDYSVGRAKYEAPNDTISGEMTLKRQYVIRNGRIV 180 Query: 180 VMFDTGVTIGDELLQQVLSHSADDRMKSIVATIQKEQNAIIRNDRSRMLVVQGAAGSGKT 239 MFDTGVTIGD+LLQ+VL ++A+ +MKSIV+TIQKEQN IIRN++SR+LVVQGAAGSGKT Sbjct: 181 SMFDTGVTIGDKLLQEVLGNNANTQMKSIVSTIQKEQNQIIRNEKSRLLVVQGAAGSGKT 240 Query: 240 SAALQRVAYLLYKYREVLQADQMLLFSPNPLFNSYVSTVLPELGEENMQQTTFQMYLEHR 299 SAALQRVAYLLY+YRE L ADQ++LFSPN +FNSYVSTVLPELGE+NM+QTTFQ YLE Sbjct: 241 SAALQRVAYLLYRYRETLHADQIVLFSPNSMFNSYVSTVLPELGEDNMKQTTFQEYLERH 300 Query: 300 LGQEFELEDVFSQTESLLNAPEGPEAATRRAGITYKSSVAFLDVIRRYVNLLEHEGMLFK 359 + ++FELED F+Q E +L E TR GI YK+S F++V+ +YV+ L+ EGMLFK Sbjct: 301 IDKKFELEDPFTQMEYVLTRMEEKSYKTRLEGIRYKASSDFIEVVDQYVSYLKREGMLFK 360 Query: 360 PLVFQGRAVVSKEEMQQKFYSFDPGIKLANRIDLMTGWLLKKIAAYSVEEREAQWVEDQI 419 + F+G ++SKE+++++FY FDP I++ NRI L++ WLLK++ ER+ WVE+++ Sbjct: 361 DIKFRGEVLISKEQIKEQFYKFDPSIRIPNRIKLISEWLLKELKEQEKIERKKLWVEEEV 420 Query: 420 ELLDSSDYQRAYNMLRRKGGGRNDSFDDFDMEKTVLARYIVSQRLKPLRGWTKRGRFVDV 479 +LLD Y + + L+++ + +FDDF+ E+ +LA +V + KPLR ++ +F+ Sbjct: 421 QLLDKETYAKVHQKLQKRQEYSDGTFDDFEREQNMLAAIVVKKYFKPLRRRVEKLQFIHT 480 Query: 480 KGLYSLLFADRELMERLGNGRELPEAWDAICRQTVASLSRNELAYEDATPFLYLKELSQG 539 LY LF D + ++L ELP+ WD IC +T+ + +AYEDATP+LY+K+ + Sbjct: 481 PALYMQLFKDPQFAKQLVEENELPQKWDEICGETIEKMQGFYMAYEDATPYLYMKDQLEE 540 Query: 540 FRTNTQIRHVIVDEVQDYSPFQLEFMRRLFPRAKMTVLGDLNQAIYAQGEVLGDLGGLVS 599 + NT ++H+ +DE QDYS FQ F++R+FP KMT+LGD NQ IY + L + Sbjct: 541 LQKNTSVQHIFIDEAQDYSAFQYAFLKRIFPHTKMTILGDFNQTIYEHASE-NEFSQLST 599 Query: 600 VYGRENTEVISLTRSYRSTYEIVEFTRSMIPGGEKIVPFNRRGESPLLTVVDNEEGLLGS 659 +YG E +E I LTRSYRST +I+EFT+ +I G E I PF R G+ P++T V E Sbjct: 600 LYGEELSEKIVLTRSYRSTKQIIEFTKQLIDGDE-IEPFQREGKQPIITEVKEGEAHHKK 658 Query: 660 IEQDVLNLHSMGYHYVAVICKTAEESARVHAKLQNRLPVRLVTKDTPNFQKGTLVLPAYL 719 I + L G+ +AVICKTAEES + LQ LPVRL+ K+T +F +G L++P+YL Sbjct: 659 IVDQIEQLKQSGHRTIAVICKTAEESEEAYYALQTSLPVRLIKKETSSFDEGILIIPSYL 718 Query: 720 AKGVEFDAVIIYDGSEAKYGRESERKLFYTACTRAMHLLHIYSLGQPNHFLPA 772 +KGVEFDAVIIYD SE KY RESERKLFYTACTRAMH L+IYS+G+ N FL + Sbjct: 719 SKGVEFDAVIIYDASEEKYSRESERKLFYTACTRAMHELYIYSVGEMNEFLQS 771 >C3BL84.1 C3BL84_9BACI UvrD/REP helicase Length = 782 Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/773 (51%), Positives = 536/773 (69%), Gaps = 3/773 (0%) Query: 1 MEKHDSEWEEEQNRVNGITKLLSAHIRRLSDELGLHRSDVVDMRKDFWEEVTVNFSSPDD 60 M K EW++EQ+RV + + HI L DVV +RK FW++VTVN + ++ Sbjct: 1 MGKTGQEWKQEQHRVKEVVGKIEKHIDTLEQYTSAATKDVVQIRKHFWDDVTVNVDNTEE 60 Query: 61 LGETSTSLRQQAQILNERERHHLQSSKALKKYRKLVVSPYFGRIDFKETADAEAERIYLG 120 ET+ S++QQA++L+ERE+ H + LK ++L SPYFGR+DF E + + IYLG Sbjct: 61 AIETAASIKQQAELLSEREQSHRHAYNQLKGLQRLQQSPYFGRVDFLEDGEKSEDAIYLG 120 Query: 121 IGSLM-EDNGSFLIYDWRAPISSLYYDGAPGPAAYETPGGLVSGTMELKRQFVIDNGTIE 179 I S E FL+YDWRAPISSLYYD + G A YE P +SG M LKRQ+VI NG I Sbjct: 121 IHSFYDEQTEQFLVYDWRAPISSLYYDYSVGRAKYEAPNDTISGEMTLKRQYVIRNGRIV 180 Query: 180 VMFDTGVTIGDELLQQVLSHSADDRMKSIVATIQKEQNAIIRNDRSRMLVVQGAAGSGKT 239 MFDTGVTIGD+LLQ+VL ++A+ +MKSIV+TIQKEQN IIRN++SR+LVVQGAAGSGKT Sbjct: 181 SMFDTGVTIGDKLLQEVLGNNANTQMKSIVSTIQKEQNQIIRNEKSRLLVVQGAAGSGKT 240 Query: 240 SAALQRVAYLLYKYREVLQADQMLLFSPNPLFNSYVSTVLPELGEENMQQTTFQMYLEHR 299 SAALQRVAYLLY+YRE L ADQ++LFSPN +FNSYVSTVLPELGE+NM+QTTFQ YLE Sbjct: 241 SAALQRVAYLLYRYRETLHADQIVLFSPNSMFNSYVSTVLPELGEDNMKQTTFQEYLERH 300 Query: 300 LGQEFELEDVFSQTESLLNAPEGPEAATRRAGITYKSSVAFLDVIRRYVNLLEHEGMLFK 359 + ++FELED F+Q E +L E TR GI YK+S F++V+ +YV+ L+ EGMLFK Sbjct: 301 IDKKFELEDPFTQMEYVLTRMEEKSYKTRLEGIRYKASSDFIEVVDQYVSYLKREGMLFK 360 Query: 360 PLVFQGRAVVSKEEMQQKFYSFDPGIKLANRIDLMTGWLLKKIAAYSVEEREAQWVEDQI 419 + F+G ++SKE+++++FY FDP I++ NRI L++ WLLK++ ER+ WVE+++ Sbjct: 361 DIKFRGEVLISKEQIKEQFYKFDPSIRIPNRIKLISEWLLKELKEQEKIERKKLWVEEEV 420 Query: 420 ELLDSSDYQRAYNMLRRKGGGRNDSFDDFDMEKTVLARYIVSQRLKPLRGWTKRGRFVDV 479 +LLD Y + + L+++ + +FDDF+ E+ +LA +V + KPLR K+ +F+ Sbjct: 421 QLLDKETYAKVHRKLQKRQEYSDGTFDDFEREQNMLAAIVVKKYFKPLRRRVKKLQFIHT 480 Query: 480 KGLYSLLFADRELMERLGNGRELPEAWDAICRQTVASLSRNELAYEDATPFLYLKELSQG 539 LY LF D E ++L +LP+ WD IC +T+ + +AYEDATP+LY+K+ + Sbjct: 481 SALYIQLFKDPEFAKQLVEEYKLPQKWDEICGETIEKMQGFYMAYEDATPYLYMKDQLEE 540 Query: 540 FRTNTQIRHVIVDEVQDYSPFQLEFMRRLFPRAKMTVLGDLNQAIYAQGEVLGDLGGLVS 599 + NT ++H+ +DE QDYS FQ F++R+FP KMT+LGD NQ IY + L + Sbjct: 541 LQKNTSVQHIFIDEAQDYSAFQYAFLKRIFPHTKMTILGDFNQTIYEHASE-NEFSQLST 599 Query: 600 VYGRENTEVISLTRSYRSTYEIVEFTRSMIPGGEKIVPFNRRGESPLLTVVDNEEGLLGS 659 +YG E +E I LTRSYRST +I+EFT+ +I G E I PF R G+ P++T V E Sbjct: 600 LYGEELSEKIVLTRSYRSTKQIIEFTKQLIDGDE-IEPFQREGKQPIITEVKEGEAHHKK 658 Query: 660 IEQDVLNLHSMGYHYVAVICKTAEESARVHAKLQNRLPVRLVTKDTPNFQKGTLVLPAYL 719 I + L G+ +AVICKTAEES + LQ LPVRL+ K+T +F +G L++P+YL Sbjct: 659 IVDQIEQLKQSGHRTIAVICKTAEESEDAYYALQTSLPVRLIKKETSSFDEGILIIPSYL 718 Query: 720 AKGVEFDAVIIYDGSEAKYGRESERKLFYTACTRAMHLLHIYSLGQPNHFLPA 772 +KGVEFDAVIIYD SE KY RESERKLFYTACTRAMH L+IYS+G+ N FL + Sbjct: 719 SKGVEFDAVIIYDASEEKYSRESERKLFYTACTRAMHELYIYSVGEMNEFLQS 771 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,588,310,571 Number of extensions: 195358122 Number of successful extensions: 582387 Number of sequences better than 1.0e-05: 614 Number of HSP's gapped: 580941 Number of HSP's successfully gapped: 746 Length of query: 785 Length of database: 3,060,696,203 Length adjustment: 144 Effective length of query: 641 Effective length of database: 1,704,070,043 Effective search space: 1092308897563 Effective search space used: 1092308897563 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)