BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0173.0002.p (148 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8Q1.1 B3K8Q1_9BACI Ribosomal protein L9 197 3e-49 B1DC39.1 B1DC39_9BACL Ribosomal protein L9 177 3e-43 C0ZA42.1 RL9_BREBN 50S ribosomal protein L9 150 3e-35 C5D9X1.1 C5D9X1_9BACI Ribosomal protein L9 148 2e-34 P02417.2 RL9_BACST 50S ribosomal protein L9 147 3e-34 >B3K8Q1.1 B3K8Q1_9BACI Ribosomal protein L9 Length = 147 Score = 197 bits (501), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 102/148 (68%), Positives = 116/148 (78%), Gaps = 1/148 (0%) Query: 1 MKVIFIKDXXXXXXXXXXXEVSEGYASNFLLPRGLVRPATEGNVKTLENQAAAEKRRKDQ 60 MKVIFIKD EVSEGYA+NFL+PRG+ RPAT+GN+KTLE Q A+E++RK Q Sbjct: 1 MKVIFIKDMKGQGKKGEVKEVSEGYATNFLIPRGVARPATDGNMKTLEQQQASEEKRKAQ 60 Query: 61 EKEEAVQLGKKLDELTLTLKAKAGEGGRLFGAITSKQIGETLTAAHGITIDKRKIELSDP 120 EKEEA LGKKL+E+T+ LKAKAGEGGRLFGAITSKQI E L A I IDKRKIELSDP Sbjct: 61 EKEEAQALGKKLEEMTVVLKAKAGEGGRLFGAITSKQIAEAL-AGQKIKIDKRKIELSDP 119 Query: 121 IRHVGTFQVTVKLHTEVKANLTVQVTEE 148 IR +G QV VKLH +VKA L VQ+TEE Sbjct: 120 IRSLGVTQVPVKLHPDVKATLKVQITEE 147 >B1DC39.1 B1DC39_9BACL Ribosomal protein L9 Length = 148 Score = 177 bits (449), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 91/148 (61%), Positives = 111/148 (75%) Query: 1 MKVIFIKDXXXXXXXXXXXEVSEGYASNFLLPRGLVRPATEGNVKTLENQAAAEKRRKDQ 60 MKVIF+KD E+SEGY NFLLP+GL + A++GN+KTLE Q A+E++RK + Sbjct: 1 MKVIFLKDVKGQGKKGDVKELSEGYVRNFLLPQGLAKLASDGNLKTLEVQNASEEKRKAK 60 Query: 61 EKEEAVQLGKKLDELTLTLKAKAGEGGRLFGAITSKQIGETLTAAHGITIDKRKIELSDP 120 EK +AV+LGKKL+EL + +KAKAGEGGRLFGAITSKQI E L A G+ IDKRKIEL D Sbjct: 61 EKADAVELGKKLEELKVVIKAKAGEGGRLFGAITSKQIAEALAAQAGVKIDKRKIELEDA 120 Query: 121 IRHVGTFQVTVKLHTEVKANLTVQVTEE 148 IR +G QV VKLH +VK+ L V VTEE Sbjct: 121 IRTLGVTQVPVKLHVDVKSKLNVHVTEE 148 >C0ZA42.1 RL9_BREBN 50S ribosomal protein L9 Length = 147 Score = 150 bits (380), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 78/148 (52%), Positives = 103/148 (69%), Gaps = 1/148 (0%) Query: 1 MKVIFIKDXXXXXXXXXXXEVSEGYASNFLLPRGLVRPATEGNVKTLENQAAAEKRRKDQ 60 MKVIF++D ++SEGY NFLLP+ LV+ AT+ NVKTL+ Q +E +RK+Q Sbjct: 1 MKVIFLQDVKGQGKKGEVKDLSEGYVRNFLLPKKLVKEATDSNVKTLDAQKRSEDKRKEQ 60 Query: 61 EKEEAVQLGKKLDELTLTLKAKAGEGGRLFGAITSKQIGETLTAAHGITIDKRKIELSDP 120 EK +A +LGKKL+ELT+ + KAGEGGRLFGAI+SKQ+ + L + I +DKRK+E+ D Sbjct: 61 EKLDAQELGKKLEELTVKVTGKAGEGGRLFGAISSKQVAQALEDQYKIKVDKRKLEM-DA 119 Query: 121 IRHVGTFQVTVKLHTEVKANLTVQVTEE 148 IR +G Q+ VKLH EV L V V EE Sbjct: 120 IRALGVTQIKVKLHNEVTVTLKVHVVEE 147 >C5D9X1.1 C5D9X1_9BACI Ribosomal protein L9 Length = 149 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/148 (53%), Positives = 99/148 (66%) Query: 1 MKVIFIKDXXXXXXXXXXXEVSEGYASNFLLPRGLVRPATEGNVKTLENQAAAEKRRKDQ 60 MKVIF+KD V++GYA+NFL +GL AT N+K LE Q E+R+ ++ Sbjct: 1 MKVIFLKDVKGKGKKGEIKNVADGYANNFLFKQGLAIEATPANIKALEAQKRKEQRQAEE 60 Query: 61 EKEEAVQLGKKLDELTLTLKAKAGEGGRLFGAITSKQIGETLTAAHGITIDKRKIELSDP 120 E +A QL +KL+++T+ L AKAGEGGRLFG+ITSKQI E L + H I IDKRKIEL D Sbjct: 61 ELAKAKQLKEKLEQITVELSAKAGEGGRLFGSITSKQIAEVLQSQHQIKIDKRKIELDDA 120 Query: 121 IRHVGTFQVTVKLHTEVKANLTVQVTEE 148 IR +G V VKLH EV A L V VTE+ Sbjct: 121 IRSLGYTNVPVKLHPEVTATLKVHVTEQ 148 >P02417.2 RL9_BACST 50S ribosomal protein L9 Length = 149 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 78/148 (52%), Positives = 101/148 (68%) Query: 1 MKVIFIKDXXXXXXXXXXXEVSEGYASNFLLPRGLVRPATEGNVKTLENQAAAEKRRKDQ 60 MKVIF+KD V++GYA+NFL +GL AT N+K LE Q E+R+ + Sbjct: 1 MKVIFLKDVKGKGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQKQKEQRQAAE 60 Query: 61 EKEEAVQLGKKLDELTLTLKAKAGEGGRLFGAITSKQIGETLTAAHGITIDKRKIELSDP 120 E A +L ++L++LT+T+ AKAGEGGRLFG+ITSKQI E+L A HG+ +DKRKIEL+D Sbjct: 61 ELANAKKLKEQLEKLTVTIPAKAGEGGRLFGSITSKQIAESLQAQHGLKLDKRKIELADA 120 Query: 121 IRHVGTFQVTVKLHTEVKANLTVQVTEE 148 IR +G V VKLH EV A L V VTE+ Sbjct: 121 IRALGYTNVPVKLHPEVTATLKVHVTEQ 148 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.131 0.345 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 687,911,250 Number of extensions: 24199630 Number of successful extensions: 84777 Number of sequences better than 1.0e-05: 1484 Number of HSP's gapped: 83527 Number of HSP's successfully gapped: 1484 Length of query: 148 Length of database: 3,060,696,203 Length adjustment: 110 Effective length of query: 38 Effective length of database: 2,024,384,553 Effective search space: 76926613014 Effective search space used: 76926613014 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 126 (53.1 bits)