BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0173.0001.p
         (94 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DC38.1 B1DC38_9BACL Diguanylate cyclase and phosphoesterase         123   5e-27
B3K8Q2.1 B3K8Q2_9BACI Phosphoesterase RecJ domain protein             117   4e-25
C3IZG5.1 C3IZG5_9BACI Diguanylate cyclase and phosphoesterase         100   4e-20
B7Y725.1 B7Y725_9BACI Diguanylate cyclase and phosphoesterase         100   4e-20
Q5KU73.1 Q5KU73_GEOKA Hypothetical conserved protein                  100   4e-20

>B1DC38.1 B1DC38_9BACL Diguanylate cyclase and phosphoesterase
          Length = 653

 Score =  123 bits (309), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 70/92 (76%)

Query: 3   KLPQLLIAQTADTLLGMTNVVASFVISERPDGLIGISARSLGRMNVQVVMEKLGGGGHLS 62
           K+ QLLIAQ+ADTLL MT++ ASFVI ERPDGLIGISARSLG MNVQVVME++GGGGHL+
Sbjct: 562 KVAQLLIAQSADTLLNMTDIYASFVIGERPDGLIGISARSLGHMNVQVVMERMGGGGHLT 621

Query: 63  NAAVQLEGTSKXXXXXXXXXXXXXXXKEGLFE 94
           NAA QLEGT +               +EGLFE
Sbjct: 622 NAAAQLEGTVQEVAAKLKNVLAQIEAEEGLFE 653


>B3K8Q2.1 B3K8Q2_9BACI Phosphoesterase RecJ domain protein
          Length = 666

 Score =  117 bits (292), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 68/91 (74%)

Query: 4   LPQLLIAQTADTLLGMTNVVASFVISERPDGLIGISARSLGRMNVQVVMEKLGGGGHLSN 63
           +PQLLIAQ AD LL MT+V ASFVISER DG IGISARS+G+MNVQ++ME+LGGGGHL+N
Sbjct: 576 MPQLLIAQVADMLLNMTDVQASFVISERTDGKIGISARSMGKMNVQMIMERLGGGGHLTN 635

Query: 64  AAVQLEGTSKXXXXXXXXXXXXXXXKEGLFE 94
           AAVQL+ T +               KEGLFE
Sbjct: 636 AAVQLDTTPEKAEEKLMEVLKDIEAKEGLFE 666


>C3IZG5.1 C3IZG5_9BACI Diguanylate cyclase and phosphoesterase
          Length = 658

 Score =  100 bits (250), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 58/63 (92%)

Query: 6   QLLIAQTADTLLGMTNVVASFVISERPDGLIGISARSLGRMNVQVVMEKLGGGGHLSNAA 65
           Q+LIAQTADTLL +++VVASFVIS+R DG +GISARSLG +NVQV+ME+LGGGGHL+NAA
Sbjct: 570 QVLIAQTADTLLTLSSVVASFVISKRSDGTVGISARSLGDVNVQVIMERLGGGGHLTNAA 629

Query: 66  VQL 68
            QL
Sbjct: 630 AQL 632


>B7Y725.1 B7Y725_9BACI Diguanylate cyclase and phosphoesterase
          Length = 658

 Score =  100 bits (250), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 58/63 (92%)

Query: 6   QLLIAQTADTLLGMTNVVASFVISERPDGLIGISARSLGRMNVQVVMEKLGGGGHLSNAA 65
           Q+LIAQTADTLL +++VVASFVIS+R DG +GISARSLG +NVQV+ME+LGGGGHL+NAA
Sbjct: 570 QVLIAQTADTLLTLSSVVASFVISKRSDGTVGISARSLGDVNVQVIMERLGGGGHLTNAA 629

Query: 66  VQL 68
            QL
Sbjct: 630 AQL 632


>Q5KU73.1 Q5KU73_GEOKA Hypothetical conserved protein
          Length = 658

 Score =  100 bits (249), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 58/63 (92%)

Query: 6   QLLIAQTADTLLGMTNVVASFVISERPDGLIGISARSLGRMNVQVVMEKLGGGGHLSNAA 65
           Q+LIAQTADTLL +++VVASFVIS+R DG +GISARSLG +NVQV+ME+LGGGGHL+NAA
Sbjct: 570 QVLIAQTADTLLTLSSVVASFVISKRSDGTVGISARSLGDVNVQVIMERLGGGGHLTNAA 629

Query: 66  VQL 68
            QL
Sbjct: 630 AQL 632


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.135    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 403,535,734
Number of extensions: 12016277
Number of successful extensions: 27467
Number of sequences better than 1.0e-05: 349
Number of HSP's gapped: 27449
Number of HSP's successfully gapped: 349
Length of query: 94
Length of database: 3,060,696,203
Length adjustment: 63
Effective length of query: 31
Effective length of database: 2,467,172,258
Effective search space: 76482339998
Effective search space used: 76482339998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)