BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0172.0014.p
         (73 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KG52.1 B3KG52_9BACI Putative uncharacterized protein                 94   3e-18
C0ZHH4.1 C0ZHH4_BREBN Putative uncharacterized protein                 78   3e-13
B1DFM6.1 B1DFM6_9BACL Putative uncharacterized protein                 72   2e-11
Q9KD21.1 Q9KD21_BACHD BH1398 protein                                   63   8e-09
C1PS27.1 C1PS27_ALIAC Putative uncharacterized protein                 62   2e-08

>B3KG52.1 B3KG52_9BACI Putative uncharacterized protein
          Length = 74

 Score = 94.4 bits (233), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 48/68 (70%)

Query: 4  AKTLVKCSVSNCHYWGEQNLCRADEILIEIDKHSGNAFKEEYAEEMAGQGHHDYAGNSSA 63
          AK LVKCSVSNCHYWGEQNLC A+ I+IEID+H+     EEY  E     H D A  SS 
Sbjct: 5  AKPLVKCSVSNCHYWGEQNLCHAEMIMIEIDRHANVKLNEEYGAEPYVDDHQDVADKSSE 64

Query: 64 TCCLTFKP 71
          TCCLTFKP
Sbjct: 65 TCCLTFKP 72


>C0ZHH4.1 C0ZHH4_BREBN Putative uncharacterized protein
          Length = 74

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 46/66 (69%), Gaps = 3/66 (4%)

Query: 8  VKCSVSNCHYWGEQNLCRADEILIEIDKHSGNAFKEEYAEEMAGQG--HHDYAGNSSATC 65
          VKCSV+NC YW + NLC A+EI++EID H+    KEE+A E  GQ   H D A  SS TC
Sbjct: 4  VKCSVANCEYWAKGNLCSAEEIMVEIDAHATVNLKEEFAGEY-GQNTQHQDKAKTSSETC 62

Query: 66 CLTFKP 71
          CLTFKP
Sbjct: 63 CLTFKP 68


>B1DFM6.1 B1DFM6_9BACL Putative uncharacterized protein
          Length = 68

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 8  VKCSVSNCHYWGEQNLCRADEILIEIDKHSGNAFKEEYAEEMAGQGHHDYAGNSSATCCL 67
          V CSVSNC +W E N C AD I I+ID+H+   F EE+A +  G  H D A  SSATCC 
Sbjct: 5  VTCSVSNCGFWKEGNNCNADAISIDIDQHAD--FNEEFAADDLGLYHQDQAAESSATCCH 62

Query: 68 TFKPNE 73
          TFKP E
Sbjct: 63 TFKPKE 68


>Q9KD21.1 Q9KD21_BACHD BH1398 protein
          Length = 73

 Score = 63.2 bits (152), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 7  LVKCSVSNCHYWGEQNLCRADEILIEIDKHSGNAFKEEYAEE-MAGQGHHDYAGNSSATC 65
          +VKC+VSNC YWGE+N C AD IL+EID +    +  E   E  A     + A +S  TC
Sbjct: 5  IVKCNVSNCMYWGEENRCHADAILVEIDANQHRDYDMEAGREPYATAEKREVAKSSGETC 64

Query: 66 CLTFKP 71
          C TF+P
Sbjct: 65 CYTFRP 70


>C1PS27.1 C1PS27_ALIAC Putative uncharacterized protein
          Length = 74

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 39/68 (57%)

Query: 5  KTLVKCSVSNCHYWGEQNLCRADEILIEIDKHSGNAFKEEYAEEMAGQGHHDYAGNSSAT 64
          K  VKC+V+NC +W E N C A  I++ + +    +F+EE+  E A      +A +S  T
Sbjct: 2  KVDVKCTVANCLFWHEGNECAAPSIMVSVSRRGETSFREEFGREFAVAERESHARSSMET 61

Query: 65 CCLTFKPN 72
          CC TFKP 
Sbjct: 62 CCETFKPR 69


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.128    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 430,224,946
Number of extensions: 13649220
Number of successful extensions: 32551
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 32550
Number of HSP's successfully gapped: 8
Length of query: 73
Length of database: 3,060,696,203
Length adjustment: 44
Effective length of query: 29
Effective length of database: 2,646,171,543
Effective search space: 76738974747
Effective search space used: 76738974747
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)