BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0172.0013.p
         (133 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KG53.1 B3KG53_9BACI Putative uncharacterized protein                130   3e-29
P54481.1 YQFX_BACSU Uncharacterized protein yqfX                       67   3e-10
C0ZHH2.1 C0ZHH2_BREBN Putative uncharacterized protein                 67   7e-10
A7Z6S3.1 A7Z6S3_BACA2 YqfX                                             65   2e-09
Q5KX34.1 Q5KX34_GEOKA Hypothetical conserved protein                   61   3e-08

>B3KG53.1 B3KG53_9BACI Putative uncharacterized protein
          Length = 120

 Score =  130 bits (327), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/134 (52%), Positives = 95/134 (70%), Gaps = 15/134 (11%)

Query: 1   MDKQDDDSNLDRNQRRKIVLRPR-RVDYPRRDKAHSEEYAAEISPLPSHVHRGHINGAEA 59
           MDK+       R  + K+V   R RVD+PR+D  H EEYAAE++P P      H +  E 
Sbjct: 1   MDKKH------RKNKMKVVQGKRNRVDFPRKD--HREEYAAEVAP-PMETSVRHAD--ED 49

Query: 60  KTETEASNESRSIGYIGLGFGVVSLFIWSIIMGPIAAVLGYYAYAKGQKTAGAWAMGLGI 119
           KT+    +  R++GY+GL  G+ SLF+WS+I+GPIAAV+GYYAY+KG +T GAW++GLGI
Sbjct: 50  KTDL---STGRAVGYVGLVLGIASLFMWSVILGPIAAVVGYYAYSKGSRTTGAWSIGLGI 106

Query: 120 VSTLSYFILIPFAR 133
           ++TLSYFILIPF+R
Sbjct: 107 LATLSYFILIPFSR 120


>P54481.1 YQFX_BACSU Uncharacterized protein yqfX
          Length = 129

 Score = 67.4 bits (163), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 2/103 (1%)

Query: 29  RRDKAHSEEYAAEISPLPSHVHRGHINGAEAKTETEASNESRSIGYIGLGFGVVSLFIWS 88
           R +    EE AAEI+       R   N  +        NE R IGYI L   ++SLF+  
Sbjct: 28  RDNDGFFEETAAEIAEPYRAADRS--NDQDNDRSGGNVNEGRGIGYIALALSIISLFVLP 85

Query: 89  IIMGPIAAVLGYYAYAKGQKTAGAWAMGLGIVSTLSYFILIPF 131
           +++G    ++GY A  +G +  GAWAMG+G+VS +    +IPF
Sbjct: 86  VLLGAAGIIVGYIARRRGAQGLGAWAMGIGVVSLVLGIFIIPF 128


>C0ZHH2.1 C0ZHH2_BREBN Putative uncharacterized protein
          Length = 193

 Score = 66.6 bits (161), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 5/96 (5%)

Query: 37  EYAAEIS-PLPSHVHRGHINGAEAKTETEASNESRSIGYIGLGFGVVSLFIWSIIMGPIA 95
           E AAEI+ P P+      I+      E    N +  IG  GLG  ++SLF    ++ PI 
Sbjct: 98  EAAAEIAEPFPTSRAASEID----TDEENRGNRASGIGMTGLGLSILSLFFMPYLVAPIG 153

Query: 96  AVLGYYAYAKGQKTAGAWAMGLGIVSTLSYFILIPF 131
            VLGY AY +  KT G WAM +G V+ L   ++ P+
Sbjct: 154 MVLGYLAYRRNSKTLGVWAMIVGAVAILGALVIYPY 189


>A7Z6S3.1 A7Z6S3_BACA2 YqfX
          Length = 123

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 34  HSEEYAAEISPLPSHVHRGHINGAEAKTETEASNESRSIGYIGLGFGVVSLFIWSIIMGP 93
           +SEE AAEIS      +R     A+     +  +E R IGY  L   ++SLF+  +++G 
Sbjct: 29  YSEETAAEIS----EPYRASDRAADRDDNRDGVSEGRGIGYAALAISIISLFVLPVLLGA 84

Query: 94  IAAVLGYYAYAKGQKTAGAWAMGLGIVSTLSYFILIPF 131
              ++GY A  +G    G WAMG+GIVS +    + PF
Sbjct: 85  CGIIVGYIARRRGAGALGGWAMGIGIVSLVLGIFITPF 122


>Q5KX34.1 Q5KX34_GEOKA Hypothetical conserved protein
          Length = 115

 Score = 60.8 bits (146), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 10/101 (9%)

Query: 31  DKAHSEEYAAEISPLPSHVHRGHINGAEAKTETEASNESRSIGYIGLGFGVVSLFIWSII 90
           ++   EE AAE++     + RG           E   +   +G++ L   +++LFIW I+
Sbjct: 23  ERNFMEETAAEVA---EPIRRGD-------ERDEERADGAGLGWLALALSIIALFIWPIL 72

Query: 91  MGPIAAVLGYYAYAKGQKTAGAWAMGLGIVSTLSYFILIPF 131
           +G    ++G+ A  +G +T GAWA+G+G+++ L    ++PF
Sbjct: 73  LGAAGIIVGFIARRRGAETLGAWAIGIGVIAILVRLFIMPF 113


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 807,050,392
Number of extensions: 32209038
Number of successful extensions: 119309
Number of sequences better than 1.0e-05: 74
Number of HSP's gapped: 119317
Number of HSP's successfully gapped: 74
Length of query: 133
Length of database: 3,060,696,203
Length adjustment: 98
Effective length of query: 35
Effective length of database: 2,137,436,733
Effective search space: 74810285655
Effective search space used: 74810285655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)